Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00107 * 2 1 4 4 O 1.21607 * 119.99634 * 174.46859 * 3 2 1 5 5 C 1.47457 * 119.99897 * 354.46837 * 3 2 1 6 6 C 1.36238 * 126.36287 * 174.00602 * 5 3 2 7 7 O 1.34277 * 107.11803 * 179.89778 * 6 5 3 8 8 C 1.34478 * 108.17243 * 0.36927 * 7 6 5 9 9 C 1.47873 * 125.48482 * 179.79021 * 8 7 6 10 10 C 1.39555 * 120.13592 * 179.69524 * 9 8 7 11 11 C 1.37969 * 119.85243 * 179.78947 * 10 9 8 12 12 C 1.38350 * 120.14156 * 0.46206 * 11 10 9 13 13 C 1.38353 * 120.29117 * 359.79517 * 12 11 10 14 14 C 1.37969 * 120.13981 * 359.96901 * 13 12 11 15 15 N 1.30894 * 109.01911 * 359.76601 * 8 7 6 16 16 C 1.46506 * 119.99696 * 180.28287 * 2 1 3 17 17 H 1.09005 * 110.88098 * 175.83959 * 16 2 1 18 18 C 1.55151 * 111.00473 * 299.71891 * 16 2 1 19 19 C 1.54323 * 102.94451 * 153.57807 * 18 16 2 20 20 N 1.47026 * 107.26602 * 337.80675 * 19 18 16 21 21 C 1.36937 * 125.64573 * 178.91841 * 20 19 18 22 22 H 1.08001 * 120.00296 * 174.84577 * 21 20 19 23 23 C 1.38819 * 119.99729 * 354.84451 * 21 20 19 24 24 N 1.31612 * 120.00320 * 7.07358 * 23 21 20 25 25 Si 1.86804 * 119.99788 * 187.07120 * 23 21 20 26 26 H 1.48494 * 109.46992 * 94.97840 * 25 23 21 27 27 H 1.48504 * 109.47131 * 214.98148 * 25 23 21 28 28 H 1.48505 * 109.47019 * 334.97883 * 25 23 21 29 29 C 1.47428 * 108.70723 * 358.94163 * 20 19 18 30 30 H 1.08993 * 109.47754 * 85.28363 * 1 2 3 31 31 H 1.08996 * 109.46886 * 205.28840 * 1 2 3 32 32 H 1.09002 * 109.46885 * 325.28149 * 1 2 3 33 33 H 1.07995 * 126.43873 * 0.03605 * 6 5 3 34 34 H 1.07993 * 120.07341 * 0.02562 * 10 9 8 35 35 H 1.08001 * 119.92659 * 180.25599 * 11 10 9 36 36 H 1.08005 * 119.85512 * 179.76311 * 12 11 10 37 37 H 1.07995 * 119.92986 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.07318 * 180.02562 * 14 13 12 39 39 H 1.09005 * 110.72176 * 271.94254 * 18 16 2 40 40 H 1.09006 * 110.72136 * 35.03658 * 18 16 2 41 41 H 1.08999 * 109.88140 * 97.22141 * 19 18 16 42 42 H 1.08996 * 109.88268 * 218.23679 * 19 18 16 43 43 H 0.97000 * 120.00370 * 179.97438 * 24 23 21 44 44 H 1.09003 * 110.36193 * 265.29073 * 29 20 19 45 45 H 1.09001 * 110.36497 * 142.96610 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3508 1.1696 0.1015 5 6 1.4068 2.4413 -0.1231 6 6 1.9389 3.6915 -0.0239 7 8 0.9334 4.5640 -0.1992 8 6 -0.1989 3.8653 -0.3946 9 6 -1.5386 4.4482 -0.6230 10 6 -2.6408 3.6152 -0.8199 11 6 -3.8888 4.1652 -1.0282 12 6 -4.0473 5.5394 -1.0515 13 6 -2.9578 6.3708 -0.8622 14 6 -1.7052 5.8334 -0.6482 15 7 0.0761 2.5864 -0.3505 16 6 2.1975 -1.2688 -0.0063 17 1 3.2714 -1.0971 -0.0793 18 6 1.8537 -2.1156 1.2475 19 6 2.1096 -3.5605 0.7695 20 7 2.0235 -3.5564 -0.6982 21 6 2.2108 -4.6419 -1.5117 22 1 2.0441 -4.5549 -2.5752 23 6 2.6149 -5.8541 -0.9692 24 7 2.6837 -6.0004 0.3369 25 14 3.0611 -7.2778 -2.0933 26 1 4.5293 -7.2917 -2.3156 27 1 2.6438 -8.5560 -1.4628 28 1 2.3648 -7.1176 -3.3952 29 6 1.7026 -2.1899 -1.1492 30 1 -0.3634 0.0845 -1.0241 31 1 -0.3633 -0.9292 0.4390 32 1 -0.3633 0.8447 0.5853 33 1 2.9750 3.9350 0.1589 34 1 -2.5177 2.5424 -0.8056 35 1 -4.7434 3.5216 -1.1766 36 1 -5.0257 5.9651 -1.2187 37 1 -3.0880 7.4427 -0.8820 38 1 -0.8555 6.4834 -0.5001 39 1 2.5131 -1.8614 2.0773 40 1 0.8099 -1.9794 1.5305 41 1 3.1027 -3.8838 1.0817 42 1 1.3548 -4.2278 1.1856 43 1 2.9658 -6.8476 0.7159 44 1 0.6270 -2.0788 -1.2872 45 1 2.2303 -1.9624 -2.0754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033591300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 62.338620 kcal Electronic energy + Delta-G solvation = -28706.365601 eV Core-core repulsion = 24692.156462 eV Total energy + Delta-G solvation = -4014.209139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.65299 -39.74469 -39.42012 -37.32170 -35.36646 -34.53897 -32.77536 -32.01932 -31.42114 -29.53514 -29.14873 -27.57454 -26.63308 -24.91080 -24.25519 -23.78849 -22.79522 -21.55721 -20.46763 -20.10004 -19.17348 -18.03601 -17.27836 -17.10117 -16.91943 -16.63642 -16.09644 -15.80371 -15.20277 -14.95925 -14.62492 -14.29243 -14.16226 -13.91400 -13.76316 -13.71436 -13.36255 -12.89053 -12.73807 -12.43996 -12.35900 -12.09916 -11.94370 -11.68767 -11.62771 -11.54327 -10.94242 -10.83161 -10.77402 -10.69926 -10.30897 -10.14303 -10.08134 -9.91443 -9.77513 -9.69631 -9.44381 -8.71919 -8.57558 -8.29141 -6.82822 -5.71465 -3.04294 0.23707 0.92143 1.10611 2.02410 2.19257 3.01165 3.23410 3.40719 3.42158 3.47201 3.49015 3.51243 4.37860 4.43448 4.50537 4.53059 4.61908 4.65703 4.92721 5.02349 5.14290 5.34569 5.37334 5.39432 5.43813 5.45927 5.54923 5.58088 5.66815 5.71270 5.82068 5.88871 5.94523 5.97396 6.02984 6.17418 6.23208 6.32849 6.41392 6.53269 6.61304 6.71457 6.94013 7.20535 7.54898 7.56847 7.64150 7.83340 8.20441 8.26769 9.21994 9.82161 10.47830 11.40527 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002238 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.773324 B =12509.180499 C =13381.585297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.582 5.582 3 C 0.595 3.405 4 O -0.539 6.539 5 C -0.056 4.056 6 C 0.013 3.987 7 O -0.192 6.192 8 C 0.231 3.769 9 C -0.019 4.019 10 C -0.069 4.069 11 C -0.120 4.120 12 C -0.101 4.101 13 C -0.122 4.122 14 C -0.089 4.089 15 N -0.439 5.439 16 C 0.122 3.878 17 H 0.107 0.893 18 C -0.152 4.152 19 C 0.179 3.821 20 N -0.603 5.603 21 C -0.229 4.229 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.132 3.868 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 26.809 0.270 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.311 5.311 3 C 0.382 3.618 4 O -0.417 6.417 5 C -0.178 4.178 6 C -0.060 4.060 7 O -0.078 6.078 8 C 0.026 3.974 9 C -0.020 4.020 10 C -0.088 4.088 11 C -0.138 4.138 12 C -0.119 4.119 13 C -0.140 4.140 14 C -0.109 4.109 15 N -0.169 5.169 16 C 0.019 3.981 17 H 0.125 0.875 18 C -0.191 4.191 19 C 0.054 3.946 20 N -0.330 5.330 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.005 3.995 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.258 26.059 0.274 28.799 hybrid contribution 0.774 -0.290 -0.443 0.937 sum -11.484 25.769 -0.169 28.213 Atomic orbital electron populations 1.21956 0.78593 1.02860 1.02477 1.47634 1.07749 1.05339 1.70424 1.16783 0.85950 0.81813 0.77270 1.90817 1.12846 1.86662 1.51410 1.21867 0.90092 0.95574 1.10225 1.25374 0.93526 0.86867 1.00255 1.84409 1.16732 1.38851 1.67762 1.23903 0.87328 0.85000 1.01204 1.17288 0.86070 0.93185 1.05430 1.21254 0.90914 1.00693 0.95931 1.21168 0.97118 0.95319 1.00230 1.21403 0.99122 0.93739 0.97684 1.21085 0.92154 1.00316 1.00474 1.21246 0.98329 0.93297 0.98021 1.71251 1.13420 1.15520 1.16746 1.22541 0.97324 0.80732 0.97502 0.87498 1.23246 1.00647 0.98557 0.96666 1.21152 1.01056 0.88941 0.83463 1.44386 1.83312 1.02994 1.02273 1.19054 1.38991 0.87572 0.90092 0.90348 1.24836 1.01550 0.97916 0.96016 1.69969 1.53039 1.24696 1.08962 0.86104 0.78383 0.81786 0.79535 1.21570 1.21769 1.20617 1.21749 0.97235 0.85835 0.94692 0.92366 0.91003 0.89928 0.75010 0.84123 0.84896 0.85434 0.85212 0.85116 0.91838 0.92021 0.93128 0.93796 0.93698 0.95848 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 7.88 59.85 0.47 1.65 16 2 N -0.58 -9.74 2.91 -172.73 -0.50 -10.24 16 3 C 0.60 9.95 7.66 -12.50 -0.10 9.86 16 4 O -0.54 -10.35 16.30 5.27 0.09 -10.26 16 5 C -0.06 -0.77 6.59 -83.08 -0.55 -1.32 16 6 C 0.01 0.15 11.94 30.01 0.36 0.50 16 7 O -0.19 -2.01 10.45 5.30 0.06 -1.96 16 8 C 0.23 2.56 7.88 -14.01 -0.11 2.45 16 9 C -0.02 -0.17 5.87 -104.98 -0.62 -0.78 16 10 C -0.07 -0.56 9.68 -39.19 -0.38 -0.94 16 11 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 12 C -0.10 -0.54 10.04 -39.50 -0.40 -0.94 16 13 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 14 C -0.09 -0.64 9.71 -39.19 -0.38 -1.02 16 15 N -0.44 -5.59 7.68 -8.26 -0.06 -5.65 16 16 C 0.12 2.38 3.43 -65.78 -0.23 2.16 16 17 H 0.11 2.27 7.05 -51.93 -0.37 1.91 16 18 C -0.15 -2.98 6.50 -24.90 -0.16 -3.14 16 19 C 0.18 4.42 5.38 -3.06 -0.02 4.40 16 20 N -0.60 -15.74 3.39 -170.07 -0.58 -16.31 16 21 C -0.23 -6.48 10.27 -15.06 -0.15 -6.64 16 22 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 23 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 24 N -0.92 -27.26 10.36 55.49 0.57 -26.68 16 25 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 29 C 0.13 2.86 6.79 -2.53 -0.02 2.84 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.02 6.39 -51.93 -0.33 0.68 16 32 H 0.08 1.08 5.86 -51.93 -0.30 0.77 16 33 H 0.23 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.14 1.15 7.82 -52.49 -0.41 0.74 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.13 0.79 7.89 -52.49 -0.41 0.37 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.11 6.47 -51.93 -0.34 0.77 16 41 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 42 H 0.04 1.18 7.61 -51.93 -0.40 0.78 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.02 0.49 6.96 -51.93 -0.36 0.13 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -33.58 373.29 -8.79 -42.38 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.80 Total: -0.78 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -3.16 Total: 6.56 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.57 Total: -58.89 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.14 Total: -12.22 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.58 -8.79 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033591300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.717 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds