Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 119.99698 * 2 1 4 4 O 1.21602 * 119.99987 * 183.55030 * 3 2 1 5 5 C 1.47437 * 119.99896 * 3.55575 * 3 2 1 6 6 C 1.38744 * 120.33097 * 25.03463 * 5 3 2 7 7 C 1.38877 * 120.71864 * 180.02562 * 6 5 3 8 8 C 1.36346 * 121.05837 * 359.97438 * 7 6 5 9 9 C 1.40434 * 120.09095 * 0.02562 * 8 7 6 10 10 C 1.40808 * 121.27291 * 180.02562 * 9 8 7 11 11 C 1.36634 * 118.15187 * 179.15386 * 10 9 8 12 12 C 1.39228 * 119.91458 * 0.78906 * 11 10 9 13 13 N 1.31230 * 121.69118 * 359.46293 * 12 11 10 14 14 C 1.33356 * 121.35589 * 359.97182 * 13 12 11 15 15 C 1.46495 * 120.00289 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.91661 * 183.89873 * 15 2 1 17 17 C 1.55131 * 110.90602 * 307.97535 * 15 2 1 18 18 N 1.47428 * 104.71936 * 155.27463 * 17 15 2 19 19 C 1.36936 * 125.64486 * 155.81951 * 18 17 15 20 20 H 1.08005 * 119.99971 * 354.82338 * 19 18 17 21 21 C 1.38807 * 120.00002 * 174.83190 * 19 18 17 22 22 N 1.31626 * 120.00155 * 156.52316 * 21 19 18 23 23 Si 1.86801 * 119.99939 * 336.24170 * 21 19 18 24 24 H 1.48498 * 109.47195 * 185.83582 * 23 21 19 25 25 H 1.48502 * 109.47352 * 305.83874 * 23 21 19 26 26 H 1.48503 * 109.46883 * 65.83738 * 23 21 19 27 27 C 1.47018 * 108.70517 * 335.55188 * 18 17 15 28 28 C 1.54323 * 107.27117 * 1.28640 * 27 18 17 29 29 H 1.08996 * 110.71953 * 263.83037 * 28 27 18 30 30 O 1.42905 * 110.71625 * 140.73510 * 28 27 18 31 31 H 1.08996 * 109.46961 * 264.07825 * 1 2 3 32 32 H 1.08993 * 109.47271 * 24.07999 * 1 2 3 33 33 H 1.09006 * 109.46992 * 144.07941 * 1 2 3 34 34 H 1.07997 * 119.64410 * 0.02911 * 6 5 3 35 35 H 1.07994 * 119.46720 * 180.02562 * 7 6 5 36 36 H 1.08008 * 119.95547 * 179.97438 * 8 7 6 37 37 H 1.07997 * 120.91467 * 359.95642 * 10 9 8 38 38 H 1.08004 * 120.04525 * 180.20989 * 11 10 9 39 39 H 1.07994 * 119.16023 * 179.43630 * 12 11 10 40 40 H 1.09000 * 110.49497 * 36.43605 * 17 15 2 41 41 H 1.09001 * 110.34134 * 274.03698 * 17 15 2 42 42 H 0.96996 * 119.99851 * 354.71432 * 22 21 19 43 43 H 1.09003 * 109.88230 * 120.70833 * 27 18 17 44 44 H 1.08998 * 109.88197 * 241.71690 * 27 18 17 45 45 H 0.96693 * 114.00059 * 61.45468 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3531 1.1684 -0.0652 5 6 1.4037 2.4429 0.0792 6 6 0.1429 2.4902 0.6562 7 6 -0.5570 3.6872 0.7346 8 6 -0.0263 4.8454 0.2488 9 6 1.2472 4.8424 -0.3433 10 6 1.8192 6.0240 -0.8525 11 6 3.0692 5.9514 -1.3994 12 6 3.7325 4.7285 -1.4557 13 7 3.1926 3.6291 -0.9845 14 6 1.9806 3.6343 -0.4283 15 6 2.1975 -1.2686 -0.0006 16 1 3.2719 -1.0977 0.0687 17 6 1.7021 -2.1944 1.1414 18 7 2.0266 -3.5583 0.6853 19 6 2.2163 -4.6464 1.4947 20 1 2.2137 -4.5279 2.5683 21 6 2.4122 -5.9017 0.9355 22 7 3.0353 -6.8373 1.6203 23 14 1.7846 -6.2656 -0.7859 24 1 1.9913 -7.7034 -1.0945 25 1 0.3364 -5.9460 -0.8626 26 1 2.5272 -5.4365 -1.7690 27 6 2.1065 -3.5581 -0.7827 28 6 1.8484 -2.1119 -1.2554 29 1 0.8026 -1.9773 -1.5317 30 8 2.7055 -1.7768 -2.3487 31 1 -0.3633 -0.1060 1.0222 32 1 -0.3633 0.9382 -0.4193 33 1 -0.3633 -0.8323 -0.6029 34 1 -0.2992 1.5864 1.0488 35 1 -1.5369 3.7010 1.1883 36 1 -0.5864 5.7662 0.3187 37 1 1.2900 6.9640 -0.8003 38 1 3.5384 6.8396 -1.7960 39 1 4.7163 4.6834 -1.8988 40 1 0.6264 -2.0868 1.2804 41 1 2.2298 -1.9687 2.0681 42 1 3.4248 -6.6283 2.4836 43 1 3.0982 -3.8805 -1.1000 44 1 1.3502 -4.2259 -1.1952 45 1 2.5774 -2.3286 -3.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047445539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 52.491131 kcal Electronic energy + Delta-G solvation = -29789.052223 eV Core-core repulsion = 25774.416065 eV Total energy + Delta-G solvation = -4014.636158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31495 -39.83911 -38.12011 -37.20169 -35.40872 -34.98081 -33.71387 -32.19470 -30.92930 -30.61042 -28.72985 -27.89111 -27.17364 -24.83563 -24.17032 -23.70227 -23.03636 -21.09035 -20.44395 -19.32911 -18.81696 -17.56253 -17.45137 -17.10204 -17.02716 -16.38579 -16.09806 -15.43161 -15.06453 -14.75487 -14.58936 -14.42744 -14.13507 -13.94192 -13.68752 -13.47280 -13.27366 -13.00750 -12.85923 -12.65711 -12.60554 -12.53245 -12.16607 -11.88607 -11.82298 -11.51972 -11.21863 -11.14357 -10.75174 -10.52490 -10.39278 -9.94045 -9.83979 -9.43974 -9.30916 -9.08595 -9.03805 -8.67143 -8.55455 -8.35303 -7.15095 -6.36538 -3.23289 -0.10542 0.51619 1.50463 2.50154 2.93463 3.16621 3.37986 3.46450 3.68351 3.90896 4.01868 4.18147 4.37809 4.41634 4.45610 4.57346 4.60728 4.65150 4.74820 4.89293 4.91401 5.04719 5.09161 5.13750 5.28834 5.30689 5.33598 5.39719 5.46897 5.55569 5.60624 5.67721 5.69077 5.77699 5.85249 5.87485 5.99253 6.16048 6.25401 6.37091 6.47203 6.49957 6.62721 6.74680 7.48674 7.57713 7.79682 7.92308 8.28796 8.37788 8.98591 9.51146 10.15064 11.13194 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.002813 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.743989 B = 9950.463162 C =10412.383843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.557 3.443 4 O -0.496 6.496 5 C -0.102 4.102 6 C -0.083 4.083 7 C -0.126 4.126 8 C -0.075 4.075 9 C -0.112 4.112 10 C -0.059 4.059 11 C -0.176 4.176 12 C 0.133 3.867 13 N -0.442 5.442 14 C 0.163 3.837 15 C 0.139 3.861 16 H 0.120 0.880 17 C 0.133 3.867 18 N -0.604 5.604 19 C -0.329 4.329 20 H 0.082 0.918 21 C -0.017 4.017 22 N -0.917 5.917 23 Si 1.054 2.946 24 H -0.299 1.299 25 H -0.298 1.298 26 H -0.283 1.283 27 C 0.091 3.909 28 C 0.080 3.920 29 H 0.064 0.936 30 O -0.553 6.553 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.030 0.970 41 H 0.056 0.944 42 H 0.264 0.736 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 27.713 -6.417 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.334 5.334 3 C 0.345 3.655 4 O -0.369 6.369 5 C -0.105 4.105 6 C -0.103 4.103 7 C -0.144 4.144 8 C -0.094 4.094 9 C -0.114 4.114 10 C -0.085 4.085 11 C -0.196 4.196 12 C -0.040 4.040 13 N -0.148 5.148 14 C 0.040 3.960 15 C 0.035 3.965 16 H 0.138 0.862 17 C 0.006 3.994 18 N -0.333 5.333 19 C -0.455 4.455 20 H 0.100 0.900 21 C -0.217 4.217 22 N -0.557 5.557 23 Si 0.887 3.113 24 H -0.226 1.226 25 H -0.226 1.226 26 H -0.210 1.210 27 C -0.035 4.035 28 C 0.020 3.980 29 H 0.082 0.918 30 O -0.358 6.358 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.412 26.000 -7.071 28.227 hybrid contribution -0.787 1.598 0.786 1.947 sum -9.199 27.599 -6.286 29.763 Atomic orbital electron populations 1.22435 0.80558 1.03611 1.01846 1.47555 1.06474 1.05602 1.73757 1.17913 0.87352 0.82716 0.77569 1.90840 1.12899 1.86364 1.46805 1.19884 0.95051 0.92997 1.02616 1.22311 0.92712 0.99749 0.95541 1.20894 1.00787 0.92127 1.00609 1.21157 0.93555 0.98933 0.95785 1.18822 0.96346 0.94281 1.01996 1.21452 0.95087 0.97223 0.94785 1.21961 0.96100 0.99852 1.01659 1.23178 0.99692 0.87556 0.93567 1.68270 1.09357 1.29632 1.07569 1.18607 0.90526 0.91321 0.95587 1.22400 0.98937 0.81266 0.93937 0.86214 1.21829 0.97577 0.84903 0.95136 1.44618 1.83555 1.04931 1.00147 1.20119 1.49051 0.86044 0.90337 0.90015 1.25741 0.98774 0.91732 1.05470 1.70898 1.33586 1.35945 1.15276 0.84119 0.76084 0.74604 0.76503 1.22645 1.22596 1.21025 1.22655 1.00027 0.94057 0.86774 1.23210 0.92880 0.94650 0.87271 0.91780 1.86580 1.63070 1.61134 1.24982 0.91617 0.89725 0.90921 0.82599 0.84716 0.84942 0.84291 0.84426 0.82247 0.95213 0.92621 0.92619 0.92350 0.95276 0.77925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 7.45 59.85 0.45 1.09 16 2 N -0.60 -9.49 2.91 -172.61 -0.50 -9.99 16 3 C 0.56 9.69 7.43 -12.51 -0.09 9.60 16 4 O -0.50 -10.68 14.99 5.28 0.08 -10.60 16 5 C -0.10 -1.42 5.55 -104.61 -0.58 -2.00 16 6 C -0.08 -0.82 7.50 -39.16 -0.29 -1.11 16 7 C -0.13 -0.94 9.93 -40.03 -0.40 -1.33 16 8 C -0.08 -0.57 9.75 -39.44 -0.38 -0.96 16 9 C -0.11 -1.15 5.74 -106.82 -0.61 -1.77 16 10 C -0.06 -0.46 9.90 -39.19 -0.39 -0.85 16 11 C -0.18 -1.38 10.03 -39.79 -0.40 -1.78 16 12 C 0.13 1.45 11.15 -17.44 -0.19 1.26 16 13 N -0.44 -6.78 8.73 -10.76 -0.09 -6.87 16 14 C 0.16 2.28 6.59 -84.58 -0.56 1.72 16 15 C 0.14 2.63 3.19 -65.66 -0.21 2.42 16 16 H 0.12 2.65 7.03 -51.93 -0.37 2.28 16 17 C 0.13 2.70 6.79 -2.41 -0.02 2.68 16 18 N -0.60 -14.91 3.34 -169.93 -0.57 -15.48 16 19 C -0.33 -9.43 10.49 -15.06 -0.16 -9.59 16 20 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 21 C -0.02 -0.49 5.47 -17.43 -0.10 -0.59 16 22 N -0.92 -28.83 13.70 55.49 0.76 -28.07 16 23 Si 1.05 26.25 24.72 -169.99 -4.20 22.05 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.30 -7.09 7.08 56.52 0.40 -6.69 16 26 H -0.28 -6.41 5.22 56.52 0.30 -6.12 16 27 C 0.09 2.00 4.34 -3.07 -0.01 1.99 16 28 C 0.08 1.47 3.90 -24.89 -0.10 1.37 16 29 H 0.06 1.03 6.35 -51.93 -0.33 0.70 16 30 O -0.55 -9.90 13.40 -35.23 -0.47 -10.37 16 31 H 0.07 0.61 6.97 -51.93 -0.36 0.25 16 32 H 0.08 0.77 4.97 -51.93 -0.26 0.51 16 33 H 0.07 0.80 6.38 -51.93 -0.33 0.46 16 34 H 0.16 1.25 4.39 -52.49 -0.23 1.02 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 37 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.03 0.55 6.86 -51.93 -0.36 0.20 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 43 H 0.06 1.40 6.76 -51.93 -0.35 1.05 16 44 H 0.03 0.66 4.24 -51.93 -0.22 0.44 16 45 H 0.37 4.94 9.11 45.56 0.42 5.36 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -39.06 354.69 -8.31 -47.37 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.61 Total: 4.46 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -4.04 Total: 2.16 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.40 Total: -60.41 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.39 Total: -20.97 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.20 Total: 22.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -39.06 -8.31 -47.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047445539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.858 kcal (2) G-P(sol) polarization free energy of solvation -39.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds