Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99980 * 2 1 4 4 O 1.21547 * 120.00026 * 185.29904 * 3 2 1 5 5 C 1.47903 * 120.00155 * 5.30022 * 3 2 1 6 6 C 1.38896 * 121.10684 * 44.58812 * 5 3 2 7 7 C 1.39273 * 119.57691 * 180.02562 * 6 5 3 8 8 N 1.31000 * 121.88578 * 0.02562 * 7 6 5 9 9 C 1.33536 * 121.82357 * 359.97438 * 8 7 6 10 10 C 1.40711 * 120.96713 * 179.97438 * 9 8 7 11 11 C 1.36069 * 119.73905 * 179.13392 * 10 9 8 12 12 C 1.39355 * 121.05099 * 0.85423 * 11 10 9 13 13 C 1.36249 * 120.83795 * 359.44823 * 12 11 10 14 14 C 1.40104 * 119.64394 * 359.97438 * 13 12 11 15 15 C 1.46500 * 120.00285 * 179.97438 * 2 1 3 16 16 H 1.09006 * 110.64242 * 178.31241 * 15 2 1 17 17 C 1.54318 * 110.72058 * 301.45431 * 15 2 1 18 18 N 1.47021 * 107.27136 * 140.55426 * 17 15 2 19 19 C 1.36939 * 125.64642 * 181.03854 * 18 17 15 20 20 H 1.07994 * 120.00220 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99690 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00314 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47069 * 59.99687 * 23 21 19 25 25 H 1.48499 * 109.47223 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46877 * 300.00195 * 23 21 19 27 27 C 1.47421 * 108.70620 * 1.06078 * 18 17 15 28 28 C 1.54915 * 104.92772 * 335.81765 * 27 18 17 29 29 H 1.09005 * 111.00089 * 278.99409 * 28 27 18 30 30 O 1.42896 * 111.00547 * 155.13707 * 28 27 18 31 31 H 1.09001 * 109.46830 * 275.13306 * 1 2 3 32 32 H 1.08997 * 109.47065 * 35.13308 * 1 2 3 33 33 H 1.09000 * 109.46847 * 155.13286 * 1 2 3 34 34 H 1.07997 * 120.21480 * 0.03050 * 6 5 3 35 35 H 1.08003 * 119.06097 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.12869 * 359.97438 * 10 9 8 37 37 H 1.08001 * 119.47481 * 180.25958 * 11 10 9 38 38 H 1.07997 * 119.57885 * 179.43505 * 12 11 10 39 39 H 1.08000 * 120.17480 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.88377 * 21.13377 * 17 15 2 41 41 H 1.09001 * 109.88372 * 259.97252 * 17 15 2 42 42 H 0.97006 * 119.99800 * 179.97438 * 22 21 19 43 43 H 1.08998 * 110.36695 * 94.70532 * 27 18 17 44 44 H 1.09002 * 110.37134 * 216.92662 * 27 18 17 45 45 H 0.96700 * 114.00294 * 61.45635 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3504 1.1695 -0.0972 5 6 1.4041 2.4454 0.1183 6 6 0.3825 2.6026 1.0461 7 6 -0.2887 3.8201 1.1299 8 7 0.0140 4.8319 0.3549 9 6 0.9841 4.7530 -0.5594 10 6 1.2938 5.8511 -1.3830 11 6 2.2991 5.7489 -2.2943 12 6 3.0197 4.5651 -2.4400 13 6 2.7436 3.4795 -1.6644 14 6 1.7230 3.5530 -0.7074 15 6 2.1975 -1.2687 0.0006 16 1 3.2727 -1.0916 -0.0296 17 6 1.8183 -2.1176 1.2322 18 7 1.7325 -3.5166 0.7885 19 6 1.4002 -4.5852 1.5777 20 1 1.1732 -4.4348 2.6227 21 6 1.3541 -5.8617 1.0342 22 7 1.6303 -6.0449 -0.2397 23 14 0.9002 -7.3194 2.1105 24 1 -0.4611 -7.1177 2.6686 25 1 0.9233 -8.5616 1.2971 26 1 1.8781 -7.4377 3.2217 27 6 2.0639 -3.5786 -0.6467 28 6 1.7502 -2.1622 -1.1902 29 1 0.6843 -2.0464 -1.3868 30 8 2.5186 -1.8814 -2.3618 31 1 -0.3633 0.0919 1.0236 32 1 -0.3633 0.8404 -0.5914 33 1 -0.3633 -0.9324 -0.4322 34 1 0.1104 1.7861 1.6985 35 1 -1.0820 3.9330 1.8541 36 1 0.7449 6.7757 -1.2828 37 1 2.5360 6.5958 -2.9214 38 1 3.8068 4.5074 -3.1772 39 1 3.3091 2.5674 -1.7861 40 1 0.8542 -1.7930 1.6236 41 1 2.5849 -2.0188 2.0008 42 1 1.5985 -6.9369 -0.6194 43 1 3.1200 -3.8116 -0.7824 44 1 1.4445 -4.3227 -1.1474 45 1 2.3431 -2.4804 -3.1003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047447461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = 21.787648 kcal Electronic energy + Delta-G solvation = -29704.011212 eV Core-core repulsion = 25688.043651 eV Total energy + Delta-G solvation = -4015.967561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33209 -39.74277 -37.88284 -37.31095 -35.32421 -34.89509 -33.64638 -31.95335 -30.80275 -30.28331 -28.65681 -27.47495 -26.87817 -25.24481 -24.27278 -23.79942 -22.89382 -20.64892 -20.56623 -19.17074 -18.50067 -17.70197 -17.37824 -17.17438 -16.85626 -16.06443 -15.65522 -15.30693 -14.97299 -14.66491 -14.47475 -14.35436 -14.08317 -13.92110 -13.77861 -13.65740 -13.20218 -13.03566 -12.72000 -12.53362 -12.18557 -11.98116 -11.84686 -11.78083 -11.59211 -11.49923 -11.32198 -11.08131 -10.87604 -10.70786 -10.31763 -10.26486 -10.02306 -9.77394 -9.56361 -9.33787 -9.02902 -8.79029 -8.52792 -8.44747 -7.01294 -5.79079 -3.22834 -0.03796 0.55980 1.56031 2.57893 2.74661 2.95022 3.33159 3.37942 3.38966 3.87828 4.00004 4.16553 4.36293 4.45175 4.49329 4.58886 4.61394 4.87349 4.94366 5.07126 5.08240 5.20212 5.26936 5.31992 5.35706 5.41380 5.51680 5.56140 5.60078 5.74783 5.79570 5.82035 5.84794 6.01122 6.04951 6.09005 6.25579 6.27559 6.36986 6.49513 6.60188 6.77215 7.25409 7.35308 7.45832 7.61387 7.64341 8.06176 8.08806 8.19988 9.05681 9.66271 10.28030 11.24597 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.002700 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.889655 B =10366.128864 C =11154.045454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.589 5.589 3 C 0.559 3.441 4 O -0.522 6.522 5 C -0.056 4.056 6 C -0.145 4.145 7 C 0.129 3.871 8 N -0.465 5.465 9 C 0.126 3.874 10 C -0.098 4.098 11 C -0.097 4.097 12 C -0.116 4.116 13 C -0.087 4.087 14 C -0.069 4.069 15 C 0.135 3.865 16 H 0.114 0.886 17 C 0.131 3.869 18 N -0.598 5.598 19 C -0.226 4.226 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.127 3.873 28 C 0.064 3.936 29 H 0.062 0.938 30 O -0.564 6.564 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.113 0.887 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 20.190 -3.511 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.320 5.320 3 C 0.346 3.654 4 O -0.399 6.399 5 C -0.067 4.067 6 C -0.165 4.165 7 C -0.043 4.043 8 N -0.173 5.173 9 C 0.005 3.995 10 C -0.117 4.117 11 C -0.117 4.117 12 C -0.134 4.134 13 C -0.105 4.105 14 C -0.071 4.071 15 C 0.032 3.968 16 H 0.132 0.868 17 C 0.005 3.995 18 N -0.326 5.326 19 C -0.354 4.354 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.002 3.998 28 C 0.003 3.997 29 H 0.080 0.920 30 O -0.368 6.368 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.166 0.834 35 H 0.183 0.817 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.131 0.869 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.791 21.249 -3.201 21.821 hybrid contribution -0.051 -2.083 0.269 2.101 sum -3.842 19.166 -2.932 19.766 Atomic orbital electron populations 1.21981 0.79455 1.03775 1.01952 1.47690 1.07093 1.05532 1.71730 1.18092 0.87088 0.83102 0.77110 1.90789 1.13343 1.86822 1.48942 1.20420 0.95628 0.94019 0.96638 1.22560 0.94996 1.00056 0.98881 1.22916 0.97602 0.87764 0.95991 1.67808 1.14365 1.30886 1.04245 1.18837 0.92875 0.92790 0.95044 1.20787 0.98078 0.97538 0.95260 1.20969 0.94981 0.98027 0.97756 1.21027 0.99993 0.92900 0.99525 1.21331 0.95519 1.00223 0.93460 1.18630 0.97792 0.93303 0.97412 1.22303 0.98145 0.81008 0.95314 0.86838 1.21538 0.98538 0.85940 0.93534 1.44253 1.81261 1.00790 1.06277 1.19033 1.39407 0.84807 0.92171 0.90202 1.24812 1.01622 0.97495 0.96485 1.69729 1.55118 1.21146 1.11102 0.86096 0.78307 0.81632 0.79118 1.21039 1.21483 1.21073 1.22597 1.00022 0.91941 0.85281 1.23801 0.93552 0.97649 0.84667 0.92047 1.86428 1.67357 1.58938 1.24112 0.91942 0.91428 0.89729 0.83422 0.81684 0.84572 0.85148 0.85233 0.83915 0.94904 0.94929 0.93459 0.95655 0.86938 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 7.79 59.85 0.47 1.32 16 2 N -0.59 -9.13 2.88 -172.75 -0.50 -9.62 16 3 C 0.56 9.02 6.85 -12.30 -0.08 8.93 16 4 O -0.52 -10.09 14.52 5.32 0.08 -10.01 16 5 C -0.06 -0.75 4.91 -104.34 -0.51 -1.26 16 6 C -0.14 -1.52 8.11 -38.95 -0.32 -1.83 16 7 C 0.13 1.25 11.14 -17.52 -0.20 1.05 16 8 N -0.46 -5.52 10.30 -11.00 -0.11 -5.63 16 9 C 0.13 1.58 6.61 -84.87 -0.56 1.02 16 10 C -0.10 -1.00 9.99 -39.43 -0.39 -1.39 16 11 C -0.10 -0.87 9.94 -39.95 -0.40 -1.27 16 12 C -0.12 -1.20 9.96 -39.88 -0.40 -1.59 16 13 C -0.09 -1.14 9.19 -39.60 -0.36 -1.50 16 14 C -0.07 -0.93 5.76 -106.52 -0.61 -1.55 16 15 C 0.14 2.52 3.11 -65.94 -0.20 2.32 16 16 H 0.11 2.38 7.00 -51.93 -0.36 2.01 16 17 C 0.13 2.66 6.88 -3.07 -0.02 2.64 16 18 N -0.60 -14.61 3.39 -170.08 -0.58 -15.19 16 19 C -0.23 -6.02 10.27 -15.06 -0.15 -6.17 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -25.66 10.09 55.49 0.56 -25.11 16 23 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.13 2.95 5.62 -2.53 -0.01 2.94 16 28 C 0.06 1.20 3.95 -24.42 -0.10 1.11 16 29 H 0.06 1.09 6.15 -51.93 -0.32 0.77 16 30 O -0.56 -10.10 13.48 -35.23 -0.47 -10.57 16 31 H 0.06 0.62 6.70 -51.93 -0.35 0.28 16 32 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 33 H 0.08 1.08 6.13 -51.93 -0.32 0.76 16 34 H 0.15 1.26 6.28 -52.49 -0.33 0.93 16 35 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.14 2.11 6.13 -52.49 -0.32 1.79 16 40 H 0.03 0.62 7.06 -51.93 -0.37 0.25 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.11 2.86 5.86 -51.93 -0.30 2.56 16 45 H 0.38 5.22 9.11 45.56 0.42 5.64 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.07 362.98 -9.23 -42.29 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.69 Total: 7.73 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -3.95 Total: 4.43 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.63 Total: -55.55 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.40 Total: -20.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.07 -9.23 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047447461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.081 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds