Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34771 * 120.00004 * 2 1 4 4 O 1.21589 * 120.00294 * 174.40285 * 3 2 1 5 5 C 1.47558 * 119.99900 * 354.40692 * 3 2 1 6 6 C 1.38689 * 120.38815 * 313.89875 * 5 3 2 7 7 C 1.38973 * 120.53470 * 179.76488 * 6 5 3 8 8 C 1.36209 * 121.23705 * 0.49815 * 7 6 5 9 9 C 1.40712 * 120.20079 * 359.76419 * 8 7 6 10 10 N 1.33692 * 120.94564 * 180.02562 * 9 8 7 11 11 C 1.31058 * 121.34188 * 179.97438 * 10 9 8 12 12 C 1.39340 * 121.70971 * 0.02562 * 11 10 9 13 13 C 1.36678 * 119.86699 * 359.97438 * 12 11 10 14 14 C 1.40468 * 118.16363 * 359.97438 * 13 12 11 15 15 C 1.46500 * 119.99903 * 179.72080 * 2 1 3 16 16 H 1.08997 * 110.64220 * 183.41462 * 15 2 1 17 17 C 1.54327 * 110.72061 * 306.75899 * 15 2 1 18 18 N 1.47022 * 107.27017 * 140.55516 * 17 15 2 19 19 C 1.36940 * 125.64724 * 181.00937 * 18 17 15 20 20 H 1.08001 * 119.99883 * 0.03390 * 19 18 17 21 21 C 1.38807 * 120.00132 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99923 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99997 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47222 * 60.00060 * 23 21 19 25 25 H 1.48500 * 109.47240 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47348 * 299.99756 * 23 21 19 27 27 C 1.47421 * 108.70578 * 1.05732 * 18 17 15 28 28 C 1.54914 * 104.83047 * 335.87004 * 27 18 17 29 29 H 1.08998 * 111.00756 * 278.93421 * 28 27 18 30 30 O 1.42901 * 111.03628 * 155.10098 * 28 27 18 31 31 H 1.09002 * 109.46879 * 84.78458 * 1 2 3 32 32 H 1.08994 * 109.46858 * 204.78220 * 1 2 3 33 33 H 1.09002 * 109.46815 * 324.78696 * 1 2 3 34 34 H 1.08000 * 119.73097 * 359.97438 * 6 5 3 35 35 H 1.07997 * 119.37841 * 180.23796 * 7 6 5 36 36 H 1.07998 * 119.89537 * 179.73873 * 8 7 6 37 37 H 1.08005 * 119.14834 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.06761 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.91786 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.87740 * 259.96923 * 17 15 2 41 41 H 1.08997 * 109.88456 * 21.13286 * 17 15 2 42 42 H 0.97001 * 119.99900 * 180.02562 * 22 21 19 43 43 H 1.08999 * 110.36473 * 217.03698 * 27 18 17 44 44 H 1.09003 * 110.46217 * 94.75507 * 27 18 17 45 45 H 0.96696 * 114.00072 * 67.77816 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3505 1.1697 0.1027 5 6 1.4064 2.4420 -0.1245 6 6 0.4142 2.5903 -1.0821 7 6 -0.2810 3.7880 -1.1989 8 6 -0.0037 4.8475 -0.3890 9 6 0.9986 4.7444 0.5932 10 7 1.2826 5.7747 1.3964 11 6 2.2141 5.6870 2.3141 12 6 2.9533 4.5203 2.4983 13 6 2.7123 3.4303 1.7098 14 6 1.7119 3.5299 0.7287 15 6 2.1976 -1.2687 0.0062 16 1 3.2715 -1.0921 0.0661 17 6 1.7225 -2.1679 1.1670 18 7 1.6750 -3.5470 0.6597 19 6 1.2832 -4.6473 1.3745 20 1 0.9733 -4.5404 2.4036 21 6 1.2840 -5.8999 0.7765 22 7 1.6611 -6.0300 -0.4778 23 14 0.7487 -7.4007 1.7514 24 1 -0.6535 -7.2213 2.2062 25 1 0.8390 -8.6078 0.8912 26 1 1.6346 -7.5661 2.9317 27 6 2.1203 -3.5493 -0.7457 28 6 1.8488 -2.1100 -1.2501 29 1 0.8021 -1.9838 -1.5266 30 8 2.7079 -1.7788 -2.3430 31 1 -0.3633 0.0934 -1.0234 32 1 -0.3633 -0.9330 0.4307 33 1 -0.3633 0.8396 0.5926 34 1 0.1776 1.7673 -1.7402 35 1 -1.0526 3.8818 -1.9486 36 1 -0.5546 5.7696 -0.5014 37 1 2.4140 6.5413 2.9441 38 1 3.7153 4.4775 3.2625 39 1 3.2748 2.5173 1.8381 40 1 2.4250 -2.1025 1.9979 41 1 0.7296 -1.8584 1.4932 42 1 1.6613 -6.9054 -0.8959 43 1 1.5430 -4.2696 -1.3253 44 1 3.1841 -3.7788 -0.8080 45 1 2.5279 -2.2794 -3.1504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047479818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = 21.166162 kcal Electronic energy + Delta-G solvation = -29710.132875 eV Core-core repulsion = 25694.138364 eV Total energy + Delta-G solvation = -4015.994511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28946 -39.80968 -37.94715 -37.07510 -35.30562 -34.82482 -33.61425 -32.04225 -30.82488 -30.45304 -28.59102 -27.31815 -26.84485 -24.95550 -24.37620 -23.75697 -23.17520 -20.53243 -20.50652 -19.12779 -18.57963 -17.51141 -17.27471 -17.03047 -16.98334 -16.17569 -15.86095 -15.26880 -14.99691 -14.75176 -14.48282 -14.35378 -14.07233 -13.83795 -13.54432 -13.48647 -13.23758 -12.90416 -12.71089 -12.42941 -12.36388 -12.13974 -11.90901 -11.72327 -11.56493 -11.52920 -11.26146 -11.01134 -10.86322 -10.75943 -10.27182 -10.15671 -9.99751 -9.78677 -9.60314 -9.29021 -9.05497 -8.77567 -8.53014 -8.40808 -6.99454 -5.77686 -3.21507 -0.01240 0.56864 1.57862 2.48457 2.83790 3.03455 3.33877 3.38580 3.39636 3.87341 4.01370 4.23740 4.37177 4.49562 4.55743 4.60223 4.66493 4.76975 4.87121 5.06538 5.13300 5.17480 5.23760 5.34812 5.45085 5.53002 5.54071 5.57790 5.62125 5.72505 5.76783 5.82590 5.86650 6.00485 6.03376 6.08790 6.11846 6.26302 6.37664 6.52244 6.54218 6.82199 7.28241 7.41312 7.48304 7.64003 7.66607 8.09923 8.14927 8.21893 9.07104 9.67608 10.29587 11.25879 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.002699 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.117921 B =10369.942772 C =10752.614860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.560 3.440 4 O -0.530 6.530 5 C -0.097 4.097 6 C -0.080 4.080 7 C -0.106 4.106 8 C -0.076 4.076 9 C 0.122 3.878 10 N -0.477 5.477 11 C 0.132 3.868 12 C -0.176 4.176 13 C -0.047 4.047 14 C -0.069 4.069 15 C 0.135 3.865 16 H 0.113 0.887 17 C 0.130 3.870 18 N -0.598 5.598 19 C -0.227 4.227 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.129 3.871 28 C 0.065 3.935 29 H 0.060 0.940 30 O -0.564 6.564 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.255 0.745 43 H 0.112 0.888 44 H 0.025 0.975 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 20.392 -0.477 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.323 5.323 3 C 0.348 3.652 4 O -0.407 6.407 5 C -0.101 4.101 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.095 4.095 9 C 0.001 3.999 10 N -0.185 5.185 11 C -0.040 4.040 12 C -0.196 4.196 13 C -0.073 4.073 14 C -0.072 4.072 15 C 0.032 3.968 16 H 0.131 0.869 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.355 4.355 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.003 3.997 28 C 0.004 3.996 29 H 0.078 0.922 30 O -0.368 6.368 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.043 0.957 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.190 21.296 -0.198 21.705 hybrid contribution 0.004 -1.989 0.192 1.998 sum -4.185 19.307 -0.006 19.755 Atomic orbital electron populations 1.22001 0.79546 1.04110 1.01771 1.47710 1.07035 1.05575 1.71936 1.18132 0.87070 0.83260 0.76736 1.90781 1.13513 1.87017 1.49398 1.19931 0.97914 0.93842 0.98384 1.21534 0.93105 0.98352 0.96830 1.20844 0.99868 0.92420 0.99398 1.20944 0.95661 0.99484 0.93384 1.18800 0.96259 0.88936 0.95939 1.68046 1.16390 1.29094 1.04959 1.22984 0.90186 0.97117 0.93731 1.21977 1.01939 0.94276 1.01398 1.21797 0.93956 0.99931 0.91636 1.18581 0.97629 0.93884 0.97071 1.22218 0.98162 0.81216 0.95182 0.86893 1.21559 0.98338 0.85920 0.93883 1.44259 1.77859 1.01156 1.09330 1.19036 1.37111 0.84514 0.94803 0.90224 1.24808 1.01386 0.97613 0.96582 1.69739 1.53471 1.22619 1.11225 0.86102 0.78410 0.81935 0.78736 1.21053 1.21487 1.21077 1.22560 0.99183 0.91475 0.86462 1.23736 0.92311 0.97508 0.86024 0.92227 1.86445 1.60648 1.66548 1.23174 0.92390 0.89349 0.91240 0.84437 0.84507 0.84383 0.82252 0.84255 0.83262 0.94945 0.94749 0.93473 0.87031 0.95681 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 7.81 59.85 0.47 1.30 16 2 N -0.59 -9.23 2.89 -173.04 -0.50 -9.73 16 3 C 0.56 9.08 6.74 -12.46 -0.08 9.00 16 4 O -0.53 -10.28 14.53 5.29 0.08 -10.20 16 5 C -0.10 -1.30 4.84 -104.65 -0.51 -1.80 16 6 C -0.08 -0.84 8.04 -39.14 -0.31 -1.15 16 7 C -0.11 -0.91 9.92 -40.04 -0.40 -1.31 16 8 C -0.08 -0.75 9.96 -39.38 -0.39 -1.14 16 9 C 0.12 1.50 6.60 -84.88 -0.56 0.94 16 10 N -0.48 -5.69 10.34 -10.99 -0.11 -5.80 16 11 C 0.13 1.29 11.15 -17.47 -0.19 1.09 16 12 C -0.18 -1.76 10.03 -39.74 -0.40 -2.16 16 13 C -0.05 -0.61 9.24 -39.31 -0.36 -0.97 16 14 C -0.07 -0.92 5.76 -106.53 -0.61 -1.54 16 15 C 0.14 2.54 3.10 -66.09 -0.20 2.34 16 16 H 0.11 2.39 7.00 -51.93 -0.36 2.03 16 17 C 0.13 2.66 6.77 -3.06 -0.02 2.64 16 18 N -0.60 -14.73 3.39 -170.07 -0.58 -15.31 16 19 C -0.23 -6.07 10.27 -15.06 -0.15 -6.22 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -25.80 10.09 55.49 0.56 -25.24 16 23 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 C 0.13 3.02 5.62 -2.53 -0.01 3.01 16 28 C 0.07 1.23 4.00 -24.58 -0.10 1.13 16 29 H 0.06 1.06 7.35 -51.93 -0.38 0.68 16 30 O -0.56 -10.15 13.47 -35.23 -0.47 -10.63 16 31 H 0.06 0.60 6.79 -51.93 -0.35 0.24 16 32 H 0.09 1.16 6.15 -51.93 -0.32 0.84 16 33 H 0.07 0.73 6.87 -51.93 -0.36 0.37 16 34 H 0.14 1.28 6.35 -52.49 -0.33 0.94 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.15 2.08 6.18 -52.49 -0.32 1.76 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.66 5.99 -51.93 -0.31 0.35 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.38 5.16 9.12 45.56 0.42 5.58 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -33.48 363.26 -9.24 -42.72 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.71 Total: 7.57 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -3.95 Total: 4.84 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.63 Total: -56.07 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.40 Total: -20.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.48 -9.24 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047479818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.884 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds