Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00360 * 2 1 4 4 O 1.21539 * 120.00334 * 174.98809 * 3 2 1 5 5 C 1.47950 * 119.99784 * 354.98777 * 3 2 1 6 6 N 1.32198 * 120.15655 * 75.51694 * 5 3 2 7 7 C 1.32034 * 122.67676 * 179.74612 * 6 5 3 8 8 C 1.36688 * 122.02870 * 0.54596 * 7 6 5 9 9 C 1.40536 * 118.84856 * 359.73436 * 8 7 6 10 10 C 1.40320 * 122.22808 * 179.97438 * 9 8 7 11 11 C 1.36201 * 119.45436 * 180.02562 * 10 9 8 12 12 C 1.39376 * 121.00303 * 0.02562 * 11 10 9 13 13 C 1.36256 * 121.08069 * 359.95477 * 12 11 10 14 14 C 1.40084 * 119.53951 * 0.04323 * 13 12 11 15 15 C 1.46503 * 119.99816 * 179.97438 * 2 1 3 16 16 H 1.09005 * 110.88367 * 180.70380 * 15 2 1 17 17 C 1.54915 * 111.00388 * 304.58309 * 15 2 1 18 18 N 1.47425 * 104.83093 * 155.12187 * 17 15 2 19 19 C 1.36940 * 125.64778 * 155.83458 * 18 17 15 20 20 H 1.08001 * 119.99816 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00038 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00124 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00127 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47144 * 89.99892 * 23 21 19 25 25 H 1.48503 * 109.47402 * 209.99969 * 23 21 19 26 26 H 1.48500 * 109.46858 * 330.00184 * 23 21 19 27 27 C 1.47016 * 108.70238 * 335.87392 * 18 17 15 28 28 C 1.54323 * 107.27621 * 1.05662 * 27 18 17 29 29 H 1.08993 * 110.72056 * 263.83340 * 28 27 18 30 30 O 1.42900 * 110.72307 * 140.55592 * 28 27 18 31 31 H 1.08997 * 109.47017 * 275.21955 * 1 2 3 32 32 H 1.09000 * 109.46917 * 35.21635 * 1 2 3 33 33 H 1.08998 * 109.47389 * 155.21266 * 1 2 3 34 34 H 1.08000 * 118.98597 * 180.25754 * 7 6 5 35 35 H 1.07995 * 120.57968 * 179.76518 * 8 7 6 36 36 H 1.08006 * 120.27052 * 0.02562 * 10 9 8 37 37 H 1.08006 * 119.49542 * 179.97438 * 11 10 9 38 38 H 1.08006 * 119.45692 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.23167 * 180.02562 * 13 12 11 40 40 H 1.08999 * 110.36465 * 273.95987 * 17 15 2 41 41 H 1.08996 * 110.36450 * 36.28138 * 17 15 2 42 42 H 0.96997 * 119.99796 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.88603 * 120.47795 * 27 18 17 44 44 H 1.09004 * 109.88100 * 241.64223 * 27 18 17 45 45 H 0.96696 * 113.99767 * 66.47709 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3509 1.1692 0.0920 5 6 1.4035 2.4460 -0.1119 6 7 0.7425 2.9252 0.9278 7 6 0.0740 4.0630 0.8848 8 6 0.0099 4.8237 -0.2490 9 6 0.6819 4.3813 -1.4013 10 6 0.6631 5.1055 -2.6030 11 6 1.3340 4.6237 -3.6859 12 6 2.0379 3.4226 -3.6183 13 6 2.0774 2.6943 -2.4674 14 6 1.3993 3.1583 -1.3329 15 6 2.1975 -1.2688 0.0006 16 1 3.2737 -1.0961 0.0130 17 6 1.7642 -2.1595 1.1916 18 7 2.0624 -3.5374 0.7605 19 6 2.2936 -4.6012 1.5912 20 1 2.2656 -4.4660 2.6623 21 6 2.5650 -5.8531 1.0566 22 7 2.6006 -6.0176 -0.2488 23 14 2.8797 -7.3044 2.1898 24 1 1.5947 -7.9857 2.4901 25 1 3.8030 -8.2596 1.5261 26 1 3.4913 -6.8218 3.4539 27 6 2.0714 -3.5800 -0.7090 28 6 1.7892 -2.1482 -1.2108 29 1 0.7312 -2.0214 -1.4401 30 8 2.5951 -1.8438 -2.3509 31 1 -0.3633 0.0935 1.0234 32 1 -0.3633 0.8396 -0.5926 33 1 -0.3634 -0.9330 -0.4308 34 1 -0.4418 4.4008 1.7715 35 1 -0.5469 5.7490 -0.2591 36 1 0.1210 6.0374 -2.6686 37 1 1.3196 5.1804 -4.6114 38 1 2.5609 3.0635 -4.4925 39 1 2.6275 1.7656 -2.4303 40 1 2.3396 -1.9079 2.0825 41 1 0.6973 -2.0444 1.3830 42 1 2.7899 -6.8926 -0.6224 43 1 3.0470 -3.9117 -1.0644 44 1 1.2950 -4.2573 -1.0650 45 1 2.3800 -2.3665 -3.1354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047506006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 18.143041 kcal Electronic energy + Delta-G solvation = -29811.807419 eV Core-core repulsion = 25795.681816 eV Total energy + Delta-G solvation = -4016.125603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34899 -39.64302 -37.90273 -37.49852 -35.24202 -34.78928 -33.30301 -31.86407 -31.50763 -30.03902 -28.59996 -27.42600 -26.74818 -25.25393 -24.23148 -23.83747 -22.99912 -20.79539 -20.42339 -19.23301 -18.21424 -17.83562 -17.36169 -17.09306 -16.73857 -16.20708 -15.87117 -15.24508 -14.96012 -14.69306 -14.38500 -14.27280 -14.03984 -13.97098 -13.87942 -13.25027 -13.02618 -12.83704 -12.66986 -12.48412 -12.37024 -12.25885 -12.13430 -11.93148 -11.49742 -11.45493 -11.22084 -10.89121 -10.79527 -10.50025 -10.22615 -10.12536 -9.97598 -9.83117 -9.60645 -9.40734 -9.29616 -8.72157 -8.41704 -8.34916 -6.92553 -5.76803 -3.11860 -0.05131 0.60820 1.55049 2.48536 2.73731 2.92633 3.38921 3.44300 3.46322 3.73039 4.03937 4.24011 4.41887 4.44978 4.49826 4.60052 4.65230 4.83243 4.87980 5.04191 5.07329 5.15288 5.23104 5.38650 5.41657 5.47607 5.49521 5.59747 5.63668 5.69181 5.77051 5.78831 5.89788 6.01025 6.07039 6.09257 6.15764 6.27354 6.49490 6.52108 6.57721 6.82138 7.33000 7.41967 7.47765 7.60744 7.72838 8.11840 8.15189 8.17767 9.13997 9.73996 10.36794 11.34683 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.002789 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.476218 B =10038.579269 C =10812.205638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.584 5.584 3 C 0.578 3.422 4 O -0.519 6.519 5 C 0.151 3.849 6 N -0.458 5.458 7 C 0.080 3.920 8 C -0.147 4.147 9 C -0.024 4.024 10 C -0.116 4.116 11 C -0.093 4.093 12 C -0.116 4.116 13 C -0.078 4.078 14 C -0.083 4.083 15 C 0.133 3.867 16 H 0.117 0.883 17 C 0.133 3.867 18 N -0.599 5.599 19 C -0.229 4.229 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.154 3.846 28 C 0.065 3.935 29 H 0.057 0.943 30 O -0.561 6.561 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.253 0.747 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 22.423 -7.380 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.316 5.316 3 C 0.363 3.637 4 O -0.393 6.393 5 C -0.003 4.003 6 N -0.168 5.168 7 C -0.065 4.065 8 C -0.166 4.166 9 C -0.029 4.029 10 C -0.134 4.134 11 C -0.112 4.112 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.086 4.086 15 C 0.029 3.971 16 H 0.135 0.865 17 C 0.005 3.995 18 N -0.327 5.327 19 C -0.357 4.357 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.028 3.972 28 C 0.004 3.996 29 H 0.075 0.925 30 O -0.366 6.366 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.682 22.214 -6.079 24.278 hybrid contribution -0.296 -0.662 -0.600 0.941 sum -7.978 21.552 -6.679 23.932 Atomic orbital electron populations 1.21775 0.79380 1.02779 1.02374 1.47633 1.07108 1.05389 1.71442 1.17732 0.86720 0.82582 0.76686 1.90839 1.12975 1.86448 1.49077 1.21389 0.94287 0.95211 0.89392 1.67413 1.06088 1.13831 1.29460 1.22250 0.96185 0.89982 0.98066 1.22072 1.00192 1.01269 0.93114 1.18129 0.96292 0.93573 0.94911 1.20951 1.00644 0.99958 0.91877 1.21045 0.95742 0.95751 0.98693 1.21002 0.99217 0.94892 0.98286 1.21149 0.96776 1.00157 0.91721 1.18669 0.99844 0.95548 0.94553 1.22505 0.98483 0.80714 0.95389 0.86491 1.21769 0.97836 0.85376 0.94474 1.44241 1.83565 1.03191 1.01685 1.19080 1.41448 0.86141 0.89052 0.90093 1.24817 1.01679 0.97685 0.96118 1.69929 1.55347 1.22537 1.09204 0.86067 0.77653 0.82218 0.79508 1.21552 1.21613 1.20572 1.21833 1.01934 0.89190 0.84231 1.23583 0.92831 0.97448 0.85706 0.92508 1.86472 1.62478 1.65512 1.22124 0.91604 0.92188 0.90117 0.82265 0.84058 0.84886 0.85323 0.85125 0.84483 0.93106 0.95476 0.93642 0.92063 0.93370 0.77894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 8.85 59.85 0.53 1.60 16 2 N -0.58 -9.78 2.91 -172.55 -0.50 -10.28 16 3 C 0.58 10.23 6.05 -12.28 -0.07 10.16 16 4 O -0.52 -10.95 16.49 5.33 0.09 -10.86 16 5 C 0.15 2.26 4.76 -82.55 -0.39 1.87 16 6 N -0.46 -6.35 10.17 -9.81 -0.10 -6.45 16 7 C 0.08 0.82 11.06 -18.03 -0.20 0.62 16 8 C -0.15 -1.28 9.88 -39.28 -0.39 -1.67 16 9 C -0.02 -0.25 5.75 -106.82 -0.61 -0.87 16 10 C -0.12 -0.94 9.82 -39.53 -0.39 -1.33 16 11 C -0.09 -0.73 9.95 -39.89 -0.40 -1.13 16 12 C -0.12 -1.11 9.95 -39.87 -0.40 -1.50 16 13 C -0.08 -0.98 9.42 -39.60 -0.37 -1.35 16 14 C -0.08 -1.10 5.76 -106.60 -0.61 -1.71 16 15 C 0.13 2.59 3.17 -65.78 -0.21 2.38 16 16 H 0.12 2.62 7.02 -51.93 -0.36 2.25 16 17 C 0.13 2.81 6.81 -2.53 -0.02 2.79 16 18 N -0.60 -15.22 3.39 -170.08 -0.58 -15.80 16 19 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.62 10.31 55.49 0.57 -26.05 16 23 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.15 3.65 5.15 -3.07 -0.02 3.63 16 28 C 0.06 1.22 3.87 -24.90 -0.10 1.13 16 29 H 0.06 0.97 6.26 -51.93 -0.32 0.64 16 30 O -0.56 -9.99 13.39 -35.23 -0.47 -10.47 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.72 6.99 -51.93 -0.36 0.36 16 33 H 0.08 1.04 6.26 -51.93 -0.33 0.71 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 39 H 0.14 1.93 7.23 -52.48 -0.38 1.55 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.54 7.15 -51.93 -0.37 0.17 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.06 1.64 7.29 -51.93 -0.38 1.27 16 44 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 45 H 0.37 5.07 9.12 45.56 0.42 5.49 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -34.59 371.08 -9.31 -43.90 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.99 Total: 5.61 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -3.90 Total: 7.82 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.61 Total: -58.58 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.38 Total: -21.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.59 -9.31 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047506006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.043 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds