Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00416 * 2 1 4 4 O 1.21566 * 120.00073 * 184.32832 * 3 2 1 5 5 C 1.47768 * 119.99812 * 4.32374 * 3 2 1 6 6 C 1.40628 * 119.80886 * 327.36665 * 5 3 2 7 7 C 1.35704 * 120.92491 * 179.75008 * 6 5 3 8 8 C 1.40756 * 120.11263 * 0.48414 * 7 6 5 9 9 N 1.33644 * 120.84481 * 179.78195 * 8 7 6 10 10 C 1.31121 * 121.39989 * 179.72927 * 9 8 7 11 11 C 1.39317 * 121.77033 * 359.97379 * 10 9 8 12 12 C 1.36579 * 119.89920 * 0.02562 * 11 10 9 13 13 C 1.40890 * 118.16036 * 359.97438 * 12 11 10 14 14 C 1.38550 * 119.80182 * 147.34800 * 5 3 2 15 15 C 1.46507 * 120.00141 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.88904 * 177.57031 * 15 2 1 17 17 C 1.54916 * 111.00004 * 301.45085 * 15 2 1 18 18 N 1.47419 * 104.83131 * 155.07824 * 17 15 2 19 19 C 1.36934 * 125.64696 * 155.90353 * 18 17 15 20 20 H 1.08000 * 119.99993 * 0.02562 * 19 18 17 21 21 C 1.38819 * 120.00015 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47196 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47416 * 119.99767 * 23 21 19 26 26 H 1.48500 * 109.47099 * 240.00184 * 23 21 19 27 27 C 1.47025 * 108.70739 * 335.87508 * 18 17 15 28 28 C 1.54331 * 107.26922 * 1.05225 * 27 18 17 29 29 H 1.08997 * 110.71971 * 263.83314 * 28 27 18 30 30 O 1.42900 * 110.71729 * 140.55964 * 28 27 18 31 31 H 1.08993 * 109.47727 * 95.21684 * 1 2 3 32 32 H 1.09002 * 109.47017 * 215.22495 * 1 2 3 33 33 H 1.09007 * 109.46542 * 335.22226 * 1 2 3 34 34 H 1.08001 * 119.53380 * 359.97438 * 6 5 3 35 35 H 1.07998 * 119.94084 * 180.26602 * 7 6 5 36 36 H 1.07995 * 119.11434 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.04499 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.91503 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.30284 * 359.97311 * 14 5 3 40 40 H 1.08997 * 110.36438 * 273.92406 * 17 15 2 41 41 H 1.09004 * 110.36642 * 36.13185 * 17 15 2 42 42 H 0.96996 * 119.99819 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.88432 * 120.47094 * 27 18 17 44 44 H 1.08998 * 109.87931 * 241.48663 * 27 18 17 45 45 H 0.96688 * 114.00193 * 66.47715 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1686 -0.0795 5 6 1.4033 2.4451 0.0965 6 6 0.1236 2.5599 -0.4753 7 6 -0.5741 3.7212 -0.3957 8 6 -0.0164 4.8368 0.2567 9 7 -0.6888 5.9888 0.3399 10 6 -0.1820 7.0331 0.9496 11 6 1.0789 6.9969 1.5409 12 6 1.8207 5.8511 1.4931 13 6 1.2726 4.7311 0.8371 14 6 1.9783 3.5229 0.7501 15 6 2.1975 -1.2688 -0.0006 16 1 3.2729 -1.0966 -0.0437 17 6 1.8216 -2.1274 1.2328 18 7 2.0990 -3.5165 0.8243 19 6 2.3683 -4.5586 1.6708 20 1 2.3895 -4.3956 2.7382 21 6 2.6141 -5.8245 1.1569 22 7 2.5878 -6.0232 -0.1439 23 14 2.9808 -7.2463 2.3117 24 1 2.9510 -6.7639 3.7158 25 1 1.9580 -8.3076 2.1306 26 1 4.3255 -7.7975 2.0067 27 6 2.0379 -3.5978 -0.6424 28 6 1.7319 -2.1792 -1.1675 29 1 0.6641 -2.0573 -1.3494 30 8 2.4824 -1.9059 -2.3524 31 1 -0.3634 -0.0934 -1.0233 32 1 -0.3633 -0.8395 0.5928 33 1 -0.3633 0.9332 0.4307 34 1 -0.3114 1.7110 -0.9817 35 1 -1.5574 3.7905 -0.8368 36 1 -0.7578 7.9456 0.9952 37 1 1.4692 7.8736 2.0363 38 1 2.8002 5.8049 1.9457 39 1 2.9608 3.4329 1.1893 40 1 2.4388 -1.8530 2.0883 41 1 0.7655 -2.0046 1.4730 42 1 2.7592 -6.9078 -0.5029 43 1 2.9955 -3.9398 -1.0349 44 1 1.2473 -4.2853 -0.9429 45 1 2.2302 -2.4488 -3.1117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047511228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 32.190902 kcal Electronic energy + Delta-G solvation = -29171.952842 eV Core-core repulsion = 25156.436399 eV Total energy + Delta-G solvation = -4015.516442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27291 -40.02370 -38.05291 -36.88981 -35.32052 -34.86528 -33.81898 -32.10911 -30.96848 -30.39533 -28.58622 -27.49576 -26.87115 -25.23095 -24.25159 -23.91496 -22.47415 -21.10792 -20.44932 -19.30491 -18.81681 -17.59747 -17.27376 -16.99727 -16.83360 -15.97948 -15.76553 -15.27008 -14.93197 -14.82798 -14.59486 -14.39674 -14.16841 -14.02903 -13.65712 -13.43105 -13.21447 -13.03734 -12.71486 -12.49960 -12.36561 -12.23575 -12.05410 -11.89276 -11.46720 -11.28626 -11.25623 -10.88735 -10.88349 -10.83218 -10.15433 -9.96071 -9.89063 -9.86378 -9.81200 -9.30063 -9.05994 -8.76688 -8.62685 -8.38488 -6.95143 -5.79667 -3.15004 -0.04641 0.36850 1.61523 2.24588 2.94444 3.13114 3.36293 3.42041 3.44399 3.78626 3.92182 4.24336 4.31723 4.35557 4.42758 4.53625 4.65763 4.72223 4.76500 4.86199 5.09951 5.12966 5.19102 5.34810 5.41517 5.43004 5.55539 5.56399 5.59113 5.65782 5.69292 5.71318 5.80626 5.88976 5.98690 6.05823 6.10462 6.15515 6.42181 6.44563 6.53947 6.82573 7.31705 7.43667 7.48813 7.54130 7.70847 8.13022 8.17282 8.21967 9.10930 9.71024 10.33777 11.31764 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.002322 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.059934 B =12057.411255 C =12379.704938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.592 5.592 3 C 0.557 3.443 4 O -0.530 6.530 5 C -0.121 4.121 6 C -0.087 4.087 7 C -0.101 4.101 8 C 0.140 3.860 9 N -0.478 5.478 10 C 0.137 3.863 11 C -0.182 4.182 12 C -0.046 4.046 13 C -0.112 4.112 14 C -0.032 4.032 15 C 0.133 3.867 16 H 0.116 0.884 17 C 0.131 3.869 18 N -0.599 5.599 19 C -0.230 4.230 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.152 3.848 28 C 0.066 3.934 29 H 0.056 0.944 30 O -0.560 6.560 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.049 0.951 41 H 0.027 0.973 42 H 0.253 0.747 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 23.662 0.072 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.323 5.323 3 C 0.345 3.655 4 O -0.407 6.407 5 C -0.124 4.124 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.019 3.981 9 N -0.186 5.186 10 C -0.036 4.036 11 C -0.202 4.202 12 C -0.072 4.072 13 C -0.114 4.114 14 C -0.052 4.052 15 C 0.030 3.970 16 H 0.134 0.866 17 C 0.004 3.996 18 N -0.326 5.326 19 C -0.358 4.358 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.746 3.254 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.027 3.973 28 C 0.006 3.994 29 H 0.074 0.926 30 O -0.365 6.365 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.690 23.775 -0.012 24.988 hybrid contribution 0.633 -1.269 0.540 1.518 sum -7.057 22.506 0.529 23.592 Atomic orbital electron populations 1.22490 0.80186 1.04236 1.01948 1.47598 1.06788 1.05768 1.72142 1.18216 0.87086 0.83318 0.76879 1.90800 1.13459 1.86995 1.49462 1.19971 0.95563 0.94724 1.02156 1.21598 0.92929 0.98467 0.97634 1.20702 1.00973 0.90675 0.99639 1.19013 0.90467 0.92707 0.95905 1.68070 1.35041 0.99236 1.16266 1.23028 0.92876 0.96607 0.91045 1.21897 0.96430 0.99404 1.02485 1.21580 0.99599 0.91634 0.94364 1.18790 0.95944 0.95249 1.01427 1.21387 0.98895 0.89975 0.94957 1.22450 0.98447 0.80817 0.95321 0.86563 1.21781 0.97935 0.85655 0.94238 1.44240 1.83350 1.03029 1.02021 1.19115 1.41299 0.86431 0.88973 0.90072 1.24833 1.01663 0.97647 0.96182 1.69939 1.55486 1.21584 1.09893 0.85993 0.77631 0.82186 0.79625 1.20415 1.21682 1.21633 1.21848 1.01815 0.89541 0.84112 1.23530 0.93498 0.97419 0.85001 0.92579 1.86502 1.64007 1.64775 1.21203 0.92027 0.90121 0.89444 0.83114 0.84095 0.82295 0.84319 0.84025 0.83975 0.93312 0.95586 0.93641 0.92131 0.93327 0.77950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 7.62 59.84 0.46 1.07 16 2 N -0.59 -9.20 2.91 -172.61 -0.50 -9.70 16 3 C 0.56 9.04 7.42 -12.36 -0.09 8.95 16 4 O -0.53 -10.62 16.12 5.31 0.09 -10.53 16 5 C -0.12 -1.54 5.45 -104.98 -0.57 -2.12 16 6 C -0.09 -0.89 7.30 -39.59 -0.29 -1.18 16 7 C -0.10 -1.01 9.95 -39.54 -0.39 -1.41 16 8 C 0.14 1.56 6.61 -84.78 -0.56 1.00 16 9 N -0.48 -5.06 10.33 -10.92 -0.11 -5.17 16 10 C 0.14 1.05 11.15 -17.45 -0.19 0.85 16 11 C -0.18 -1.20 10.03 -39.78 -0.40 -1.60 16 12 C -0.05 -0.37 9.89 -39.18 -0.39 -0.75 16 13 C -0.11 -1.19 5.74 -106.82 -0.61 -1.80 16 14 C -0.03 -0.38 9.35 -38.74 -0.36 -0.74 16 15 C 0.13 2.55 3.18 -65.77 -0.21 2.34 16 16 H 0.12 2.59 7.01 -51.93 -0.36 2.22 16 17 C 0.13 2.70 6.82 -2.53 -0.02 2.68 16 18 N -0.60 -15.05 3.39 -170.07 -0.58 -15.62 16 19 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.56 10.31 55.49 0.57 -25.99 16 23 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.15 3.61 5.15 -3.06 -0.02 3.60 16 28 C 0.07 1.25 3.89 -24.89 -0.10 1.15 16 29 H 0.06 0.94 6.93 -51.93 -0.36 0.58 16 30 O -0.56 -10.35 13.39 -35.23 -0.47 -10.82 16 31 H 0.06 0.60 7.19 -51.93 -0.37 0.23 16 32 H 0.08 0.94 6.28 -51.93 -0.33 0.61 16 33 H 0.09 0.82 4.69 -51.92 -0.24 0.57 16 34 H 0.15 1.30 4.83 -52.49 -0.25 1.05 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 1.58 7.94 -52.49 -0.42 1.16 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.50 6.24 -51.93 -0.32 0.18 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.63 7.29 -51.93 -0.38 1.26 16 44 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 45 H 0.37 5.28 9.12 45.56 0.42 5.69 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -35.30 364.17 -9.21 -44.51 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.67 Total: 5.74 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -4.00 Total: 5.28 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.62 Total: -56.48 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.39 Total: -21.35 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.30 -9.21 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047511228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.703 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds