Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00416 * 2 1 4 4 O 1.21566 * 120.00073 * 184.32832 * 3 2 1 5 5 C 1.47768 * 119.99812 * 4.32374 * 3 2 1 6 6 C 1.40628 * 119.80886 * 327.36665 * 5 3 2 7 7 C 1.35704 * 120.92491 * 179.75008 * 6 5 3 8 8 C 1.40756 * 120.11263 * 0.48414 * 7 6 5 9 9 N 1.33644 * 120.84481 * 179.78195 * 8 7 6 10 10 C 1.31121 * 121.39989 * 179.72927 * 9 8 7 11 11 C 1.39317 * 121.77033 * 359.97379 * 10 9 8 12 12 C 1.36579 * 119.89920 * 0.02562 * 11 10 9 13 13 C 1.40890 * 118.16036 * 359.97438 * 12 11 10 14 14 C 1.38550 * 119.80182 * 147.34800 * 5 3 2 15 15 C 1.46507 * 120.00141 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.88904 * 177.57031 * 15 2 1 17 17 C 1.54916 * 111.00004 * 301.45085 * 15 2 1 18 18 N 1.47419 * 104.83131 * 155.07824 * 17 15 2 19 19 C 1.36934 * 125.64696 * 155.90353 * 18 17 15 20 20 H 1.08000 * 119.99993 * 0.02562 * 19 18 17 21 21 C 1.38819 * 120.00015 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47196 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47416 * 119.99767 * 23 21 19 26 26 H 1.48500 * 109.47099 * 240.00184 * 23 21 19 27 27 C 1.47025 * 108.70739 * 335.87508 * 18 17 15 28 28 C 1.54331 * 107.26922 * 1.05225 * 27 18 17 29 29 H 1.08997 * 110.71971 * 263.83314 * 28 27 18 30 30 O 1.42900 * 110.71729 * 140.55964 * 28 27 18 31 31 H 1.08993 * 109.47727 * 95.21684 * 1 2 3 32 32 H 1.09002 * 109.47017 * 215.22495 * 1 2 3 33 33 H 1.09007 * 109.46542 * 335.22226 * 1 2 3 34 34 H 1.08001 * 119.53380 * 359.97438 * 6 5 3 35 35 H 1.07998 * 119.94084 * 180.26602 * 7 6 5 36 36 H 1.07995 * 119.11434 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.04499 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.91503 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.30284 * 359.97311 * 14 5 3 40 40 H 1.08997 * 110.36438 * 273.92406 * 17 15 2 41 41 H 1.09004 * 110.36642 * 36.13185 * 17 15 2 42 42 H 0.96996 * 119.99819 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.88432 * 120.47094 * 27 18 17 44 44 H 1.08998 * 109.87931 * 241.48663 * 27 18 17 45 45 H 0.96688 * 114.00193 * 66.47715 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1686 -0.0795 5 6 1.4033 2.4451 0.0965 6 6 0.1236 2.5599 -0.4753 7 6 -0.5741 3.7212 -0.3957 8 6 -0.0164 4.8368 0.2567 9 7 -0.6888 5.9888 0.3399 10 6 -0.1820 7.0331 0.9496 11 6 1.0789 6.9969 1.5409 12 6 1.8207 5.8511 1.4931 13 6 1.2726 4.7311 0.8371 14 6 1.9783 3.5229 0.7501 15 6 2.1975 -1.2688 -0.0006 16 1 3.2729 -1.0966 -0.0437 17 6 1.8216 -2.1274 1.2328 18 7 2.0990 -3.5165 0.8243 19 6 2.3683 -4.5586 1.6708 20 1 2.3895 -4.3956 2.7382 21 6 2.6141 -5.8245 1.1569 22 7 2.5878 -6.0232 -0.1439 23 14 2.9808 -7.2463 2.3117 24 1 2.9510 -6.7639 3.7158 25 1 1.9580 -8.3076 2.1306 26 1 4.3255 -7.7975 2.0067 27 6 2.0379 -3.5978 -0.6424 28 6 1.7319 -2.1792 -1.1675 29 1 0.6641 -2.0573 -1.3494 30 8 2.4824 -1.9059 -2.3524 31 1 -0.3634 -0.0934 -1.0233 32 1 -0.3633 -0.8395 0.5928 33 1 -0.3633 0.9332 0.4307 34 1 -0.3114 1.7110 -0.9817 35 1 -1.5574 3.7905 -0.8368 36 1 -0.7578 7.9456 0.9952 37 1 1.4692 7.8736 2.0363 38 1 2.8002 5.8049 1.9457 39 1 2.9608 3.4329 1.1893 40 1 2.4388 -1.8530 2.0883 41 1 0.7655 -2.0046 1.4730 42 1 2.7592 -6.9078 -0.5029 43 1 2.9955 -3.9398 -1.0349 44 1 1.2473 -4.2853 -0.9429 45 1 2.2302 -2.4488 -3.1117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047511228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 6.360850 kcal Electronic energy + Delta-G solvation = -29173.072917 eV Core-core repulsion = 25156.436399 eV Total energy + Delta-G solvation = -4016.636517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11120 -41.15877 -39.54645 -37.80989 -36.75985 -36.44601 -34.51347 -33.91457 -31.96888 -31.16604 -30.25129 -29.05250 -28.06772 -26.63359 -25.53940 -24.72037 -23.25346 -22.44781 -22.19575 -20.64611 -19.70702 -19.04141 -18.59548 -18.14932 -17.92463 -17.39253 -16.83856 -16.55583 -16.31166 -15.86884 -15.64962 -15.60784 -15.33368 -15.05842 -14.73548 -14.59373 -14.45322 -14.26583 -14.04745 -13.98056 -13.64920 -13.25708 -13.18580 -13.15374 -13.05722 -12.77520 -12.66127 -12.61871 -12.13754 -12.05030 -11.89102 -11.58828 -11.53744 -11.15340 -10.88530 -10.79507 -10.51195 -9.85384 -9.77308 -9.31559 -8.97103 -7.89676 -5.27540 -0.79245 -0.33813 0.87001 1.37670 1.45389 1.47043 1.56977 1.72782 2.11935 2.46468 3.05357 3.09817 3.25949 3.31982 3.39203 3.55207 3.55688 3.73692 3.81690 3.94700 3.97266 4.02554 4.05579 4.08924 4.16766 4.35058 4.41579 4.48325 4.51627 4.55322 4.73195 4.75183 4.87049 4.88764 4.93743 5.00240 5.03343 5.19008 5.25462 5.35926 5.40200 5.43956 5.50759 5.64909 5.75919 6.11308 6.26528 6.84384 6.88915 6.97615 7.02776 7.67313 8.29877 9.20234 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.002322 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.059934 B =12057.411255 C =12379.704938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.589 5.589 3 C 0.555 3.445 4 O -0.581 6.581 5 C -0.139 4.139 6 C -0.085 4.085 7 C -0.099 4.099 8 C 0.123 3.877 9 N -0.505 5.505 10 C 0.139 3.861 11 C -0.171 4.171 12 C -0.056 4.056 13 C -0.128 4.128 14 C -0.035 4.035 15 C 0.145 3.855 16 H 0.078 0.922 17 C 0.133 3.867 18 N -0.621 5.621 19 C -0.244 4.244 20 H 0.086 0.914 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.294 1.294 27 C 0.163 3.837 28 C 0.086 3.914 29 H 0.091 0.909 30 O -0.572 6.572 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.194 0.806 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.249 0.751 43 H 0.017 0.983 44 H 0.027 0.973 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 26.377 0.865 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.319 5.319 3 C 0.345 3.655 4 O -0.462 6.462 5 C -0.142 4.142 6 C -0.105 4.105 7 C -0.117 4.117 8 C 0.002 3.998 9 N -0.214 5.214 10 C -0.033 4.033 11 C -0.190 4.190 12 C -0.082 4.082 13 C -0.130 4.130 14 C -0.054 4.054 15 C 0.040 3.960 16 H 0.096 0.904 17 C 0.007 3.993 18 N -0.348 5.348 19 C -0.373 4.373 20 H 0.104 0.896 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.810 3.190 24 H -0.189 1.189 25 H -0.215 1.215 26 H -0.222 1.222 27 C 0.038 3.962 28 C 0.025 3.975 29 H 0.109 0.891 30 O -0.379 6.379 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.210 0.790 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.156 0.844 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.813 26.521 0.784 28.289 hybrid contribution 1.276 -1.884 0.337 2.300 sum -8.537 24.637 1.121 26.098 Atomic orbital electron populations 1.22841 0.77202 1.05638 1.03819 1.47589 1.08427 1.04170 1.71707 1.18791 0.86680 0.84435 0.75600 1.90765 1.15788 1.87768 1.51851 1.19746 0.96727 0.93117 1.04575 1.21650 0.91833 0.99393 0.97608 1.20929 1.01565 0.90166 0.99070 1.19303 0.90787 0.93475 0.96185 1.68130 1.35717 0.99746 1.17820 1.23738 0.93475 0.96878 0.89200 1.22318 0.95589 0.99954 1.01125 1.21923 1.00732 0.91391 0.94129 1.18942 0.96143 0.95561 1.02338 1.21450 0.98824 0.90412 0.94752 1.21937 0.96917 0.82438 0.94748 0.90401 1.21886 0.99104 0.83705 0.94598 1.44504 1.83386 1.04415 1.02527 1.19492 1.40746 0.87371 0.89686 0.89641 1.25686 1.02114 1.00167 0.97724 1.70146 1.56523 1.21671 1.11459 0.84967 0.76817 0.78874 0.78384 1.18937 1.21458 1.22165 1.21600 0.98732 0.92172 0.83744 1.23302 0.95189 0.93997 0.85011 0.89127 1.86473 1.64530 1.65165 1.21726 0.89580 0.90031 0.87074 0.81329 0.82214 0.78962 0.80630 0.82094 0.84436 0.94078 0.92833 0.94188 0.96484 0.95487 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 7.62 127.77 0.97 1.89 16 2 N -0.59 -17.97 2.91 -818.29 -2.38 -20.35 16 3 C 0.55 18.25 7.42 86.76 0.64 18.89 16 4 O -0.58 -24.41 16.12 -3.92 -0.06 -24.48 16 5 C -0.14 -3.48 5.45 -20.10 -0.11 -3.59 16 6 C -0.09 -1.61 7.30 22.27 0.16 -1.45 16 7 C -0.10 -1.78 9.95 22.30 0.22 -1.56 16 8 C 0.12 2.53 6.61 40.36 0.27 2.80 16 9 N -0.51 -9.46 10.33 -188.46 -1.95 -11.41 16 10 C 0.14 1.65 11.15 85.06 0.95 2.59 16 11 C -0.17 -1.62 10.03 22.14 0.22 -1.40 16 12 C -0.06 -0.77 9.89 22.53 0.22 -0.55 16 13 C -0.13 -2.56 5.74 -21.29 -0.12 -2.68 16 14 C -0.03 -0.81 9.35 22.82 0.21 -0.59 16 15 C 0.14 5.63 3.18 46.39 0.15 5.77 16 16 H 0.08 3.66 7.01 -2.39 -0.02 3.64 16 17 C 0.13 5.52 6.82 86.86 0.59 6.11 16 18 N -0.62 -31.93 3.39 -691.97 -2.35 -34.28 16 19 C -0.24 -13.66 10.28 84.04 0.86 -12.79 16 20 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 21 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 22 N -0.95 -56.51 10.31 21.65 0.22 -56.29 16 23 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 C 0.16 8.01 5.15 86.73 0.45 8.46 16 28 C 0.09 3.23 3.89 31.79 0.12 3.36 16 29 H 0.09 2.84 6.93 -2.39 -0.02 2.82 16 30 O -0.57 -21.14 13.39 -148.98 -1.99 -23.13 16 31 H 0.09 1.36 7.19 -2.39 -0.02 1.34 16 32 H 0.08 1.66 6.28 -2.39 -0.01 1.65 16 33 H 0.11 1.77 4.69 -2.38 -0.01 1.76 16 34 H 0.17 2.44 4.83 -2.91 -0.01 2.42 16 35 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.14 3.18 7.94 -2.91 -0.02 3.16 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.96 6.24 -2.38 -0.01 1.95 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.02 0.97 7.29 -2.39 -0.02 0.95 16 44 H 0.03 1.42 7.50 -2.39 -0.02 1.40 16 45 H 0.39 10.93 9.12 -74.06 -0.68 10.25 16 Total: -1.00 -80.90 364.17 0.17 -80.73 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.37 Total: 19.48 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.28 Total: 22.12 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -6.45 Total: -122.32 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.06 Total: -47.61 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -80.90 0.17 -80.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047511228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.090 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds