Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34782 * 119.99789 * 2 1 4 4 O 1.21502 * 119.99748 * 185.30165 * 3 2 1 5 5 C 1.48269 * 119.99948 * 5.29730 * 3 2 1 6 6 C 1.40284 * 119.24210 * 187.11001 * 5 3 2 7 7 C 1.36502 * 119.82048 * 179.97438 * 6 5 3 8 8 C 1.40753 * 118.24652 * 0.02562 * 7 6 5 9 9 C 1.40416 * 121.29267 * 180.02562 * 8 7 6 10 10 C 1.36131 * 119.65519 * 180.02562 * 9 8 7 11 11 C 1.39429 * 120.91629 * 359.95161 * 10 9 8 12 12 C 1.35997 * 121.08316 * 0.02562 * 11 10 9 13 13 C 1.40827 * 119.73409 * 359.97438 * 12 11 10 14 14 N 1.31874 * 119.24534 * 6.84021 * 5 3 2 15 15 C 1.46505 * 120.00368 * 180.02562 * 2 1 3 16 16 H 1.09000 * 110.64044 * 178.31667 * 15 2 1 17 17 C 1.54330 * 110.71579 * 301.45266 * 15 2 1 18 18 N 1.47023 * 107.27080 * 140.73538 * 17 15 2 19 19 C 1.36930 * 125.64685 * 181.02295 * 18 17 15 20 20 H 1.07990 * 120.00314 * 12.01322 * 19 18 17 21 21 C 1.38814 * 119.99541 * 192.01046 * 19 18 17 22 22 N 1.31621 * 119.99989 * 205.70209 * 21 19 18 23 23 Si 1.86801 * 120.00262 * 25.70475 * 21 19 18 24 24 H 1.48503 * 109.47072 * 269.99761 * 23 21 19 25 25 H 1.48493 * 109.47166 * 149.99848 * 23 21 19 26 26 H 1.48503 * 109.47067 * 29.99872 * 23 21 19 27 27 C 1.47432 * 108.69794 * 1.28348 * 18 17 15 28 28 C 1.55123 * 104.72626 * 335.55435 * 27 18 17 29 29 H 1.08997 * 111.19316 * 279.19041 * 28 27 18 30 30 O 1.42896 * 110.93966 * 155.28774 * 28 27 18 31 31 H 1.09003 * 109.47684 * 275.49264 * 1 2 3 32 32 H 1.09000 * 109.47644 * 35.49498 * 1 2 3 33 33 H 1.09011 * 109.47160 * 155.49459 * 1 2 3 34 34 H 1.08006 * 120.08795 * 0.02562 * 6 5 3 35 35 H 1.08007 * 120.87797 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.16895 * 359.96864 * 9 8 7 37 37 H 1.07997 * 119.54189 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.46182 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.13248 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.88268 * 21.31702 * 17 15 2 41 41 H 1.09007 * 110.00888 * 260.22363 * 17 15 2 42 42 H 0.97004 * 119.99797 * 354.93659 * 22 21 19 43 43 H 1.09002 * 110.36095 * 94.48657 * 27 18 17 44 44 H 1.08997 * 110.36301 * 216.80426 * 27 18 17 45 45 H 0.96708 * 113.99930 * 67.96019 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3499 1.1695 -0.0972 5 6 1.4021 2.4485 0.1185 6 6 2.0992 3.6564 -0.0336 7 6 1.4326 4.8428 0.0727 8 6 0.0502 4.8091 0.3354 9 6 -0.6982 5.9909 0.4568 10 6 -2.0335 5.9194 0.7118 11 6 -2.6708 4.6873 0.8536 12 6 -1.9787 3.5220 0.7422 13 6 -0.5956 3.5534 0.4788 14 7 0.1057 2.4265 0.3593 15 6 2.1975 -1.2687 -0.0006 16 1 3.2726 -1.0916 -0.0305 17 6 1.8182 -2.1187 1.2305 18 7 1.7366 -3.5179 0.7865 19 6 1.4060 -4.5874 1.5751 20 1 0.9918 -4.4251 2.5591 21 6 1.6031 -5.8802 1.1095 22 7 0.8703 -6.8676 1.5789 23 14 2.9084 -6.2185 -0.1832 24 1 2.3106 -6.0882 -1.5363 25 1 3.4358 -7.5952 -0.0056 26 1 4.0166 -5.2410 -0.0354 27 6 2.0760 -3.5795 -0.6469 28 6 1.7549 -2.1621 -1.1894 29 1 0.6893 -2.0483 -1.3881 30 8 2.5246 -1.8764 -2.3590 31 1 -0.3634 0.0984 1.0229 32 1 -0.3634 0.8367 -0.5967 33 1 -0.3634 -0.9352 -0.4263 34 1 3.1602 3.6476 -0.2351 35 1 1.9523 5.7828 -0.0410 36 1 -0.2168 6.9517 0.3493 37 1 -2.6073 6.8295 0.8052 38 1 -3.7313 4.6580 1.0553 39 1 -2.4879 2.5761 0.8545 40 1 0.8526 -1.7965 1.6201 41 1 2.5814 -2.0185 2.0023 42 1 0.2440 -6.7057 2.3018 43 1 3.1340 -3.8073 -0.7767 44 1 1.4618 -4.3260 -1.1504 45 1 2.2838 -2.4105 -3.1284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047607573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 32.551153 kcal Electronic energy + Delta-G solvation = -29508.312326 eV Core-core repulsion = 25492.811505 eV Total energy + Delta-G solvation = -4015.500821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37967 -39.89707 -38.24335 -37.07487 -35.47683 -35.03813 -33.82836 -32.16093 -31.06225 -30.42352 -28.91815 -27.79816 -26.80370 -25.40499 -24.16027 -23.56480 -22.46827 -21.38074 -20.72788 -19.32158 -18.34523 -18.04649 -17.51730 -17.38063 -17.02770 -16.26100 -15.64872 -15.55135 -15.11515 -14.77249 -14.50834 -14.45362 -14.18651 -13.87414 -13.69877 -13.60304 -13.47507 -13.13859 -12.96971 -12.52321 -12.45248 -12.28745 -12.05754 -11.92977 -11.89821 -11.67195 -11.42445 -11.07563 -10.92156 -10.71418 -10.34450 -10.14532 -9.95014 -9.47802 -9.42622 -9.28062 -9.15757 -8.66031 -8.55308 -8.40677 -7.15321 -6.36732 -3.25042 -0.13226 0.33875 1.58485 2.18854 2.89099 3.05812 3.38154 3.53348 3.66396 3.72241 3.82254 4.17236 4.28506 4.36329 4.43111 4.51335 4.55974 4.72120 4.76667 4.94528 4.99279 5.08355 5.16237 5.25771 5.33871 5.37581 5.46826 5.53536 5.55001 5.57800 5.68815 5.80363 5.82120 5.88942 5.94926 6.01106 6.05190 6.18314 6.36530 6.39811 6.44560 6.48721 6.59363 6.74539 7.32839 7.47362 7.61716 7.89412 8.13794 8.29532 8.98366 9.52433 10.18082 11.11348 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.002726 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.878912 B =10268.424756 C =11030.690768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.578 5.578 3 C 0.566 3.434 4 O -0.530 6.530 5 C 0.123 3.877 6 C -0.122 4.122 7 C -0.064 4.064 8 C -0.089 4.089 9 C -0.102 4.102 10 C -0.109 4.109 11 C -0.106 4.106 12 C -0.083 4.083 13 C 0.118 3.882 14 N -0.432 5.432 15 C 0.134 3.866 16 H 0.116 0.884 17 C 0.131 3.869 18 N -0.602 5.602 19 C -0.329 4.329 20 H 0.078 0.922 21 C -0.018 4.018 22 N -0.917 5.917 23 Si 1.062 2.938 24 H -0.294 1.294 25 H -0.297 1.297 26 H -0.285 1.285 27 C 0.080 3.920 28 C 0.079 3.921 29 H 0.073 0.927 30 O -0.558 6.558 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.263 0.737 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 27.365 -5.267 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.308 5.308 3 C 0.352 3.648 4 O -0.405 6.405 5 C -0.030 4.030 6 C -0.143 4.143 7 C -0.090 4.090 8 C -0.091 4.091 9 C -0.120 4.120 10 C -0.127 4.127 11 C -0.126 4.126 12 C -0.102 4.102 13 C -0.005 4.005 14 N -0.145 5.145 15 C 0.031 3.969 16 H 0.134 0.866 17 C 0.004 3.996 18 N -0.331 5.331 19 C -0.456 4.456 20 H 0.096 0.904 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.894 3.106 24 H -0.222 1.222 25 H -0.225 1.225 26 H -0.212 1.212 27 C -0.046 4.046 28 C 0.019 3.981 29 H 0.090 0.910 30 O -0.363 6.363 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.997 25.735 -5.673 26.822 hybrid contribution -0.577 1.563 0.635 1.784 sum -5.574 27.299 -5.037 28.313 Atomic orbital electron populations 1.22131 0.78173 1.02449 1.02871 1.47625 1.07881 1.05016 1.70304 1.17917 0.86559 0.82830 0.77523 1.90782 1.13065 1.86522 1.50159 1.21391 0.89906 0.94269 0.97425 1.21758 1.02442 0.91399 0.98687 1.21457 0.92691 0.98891 0.95955 1.18996 0.94618 0.94626 1.00832 1.21001 0.94360 0.97030 0.99643 1.21002 0.94790 0.98198 0.98714 1.20948 1.00558 0.92009 0.99061 1.20918 0.91327 0.99567 0.98345 1.19018 0.94613 0.87889 0.98999 1.68460 1.06808 1.28990 1.10214 1.22210 0.98479 0.81608 0.94628 0.86569 1.21602 0.99203 0.85287 0.93524 1.44624 1.82134 1.02310 1.04021 1.20036 1.39991 0.84464 1.01091 0.90377 1.25868 1.01222 0.90985 1.03840 1.70920 1.23293 1.34624 1.26946 0.83885 0.76890 0.74840 0.75029 1.22228 1.22481 1.21189 1.22690 0.99523 0.95278 0.87112 1.23453 0.94409 0.95172 0.85111 0.90961 1.86502 1.63203 1.65232 1.21331 0.91918 0.89358 0.91625 0.83124 0.83681 0.85090 0.85395 0.85059 0.84257 0.94198 0.94456 0.92623 0.93856 0.91651 0.77724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 7.86 59.84 0.47 1.67 16 2 N -0.58 -9.56 2.89 -172.79 -0.50 -10.06 16 3 C 0.57 9.43 7.65 -12.13 -0.09 9.34 16 4 O -0.53 -10.17 15.69 5.36 0.08 -10.08 16 5 C 0.12 1.69 6.57 -82.96 -0.55 1.15 16 6 C -0.12 -1.38 9.54 -39.44 -0.38 -1.75 16 7 C -0.06 -0.56 9.88 -39.26 -0.39 -0.95 16 8 C -0.09 -0.83 5.75 -106.72 -0.61 -1.45 16 9 C -0.10 -0.70 9.77 -39.52 -0.39 -1.08 16 10 C -0.11 -0.66 9.95 -39.90 -0.40 -1.06 16 11 C -0.11 -0.70 9.94 -39.94 -0.40 -1.10 16 12 C -0.08 -0.73 9.99 -39.41 -0.39 -1.12 16 13 C 0.12 1.29 6.61 -84.85 -0.56 0.73 16 14 N -0.43 -5.51 6.09 -7.54 -0.05 -5.56 16 15 C 0.13 2.54 3.08 -66.09 -0.20 2.33 16 16 H 0.12 2.40 7.00 -51.93 -0.36 2.04 16 17 C 0.13 2.75 6.88 -3.06 -0.02 2.73 16 18 N -0.60 -14.85 3.27 -169.93 -0.56 -15.40 16 19 C -0.33 -9.36 10.43 -15.06 -0.16 -9.52 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 21 C -0.02 -0.53 5.41 -17.43 -0.09 -0.63 16 22 N -0.92 -28.44 13.70 55.49 0.76 -27.68 16 23 Si 1.06 26.64 24.70 -169.99 -4.20 22.44 16 24 H -0.29 -6.87 6.59 56.52 0.37 -6.49 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -6.95 6.27 56.52 0.35 -6.59 16 27 C 0.08 1.76 4.44 -2.41 -0.01 1.75 16 28 C 0.08 1.44 3.95 -24.47 -0.10 1.35 16 29 H 0.07 1.22 6.16 -51.93 -0.32 0.90 16 30 O -0.56 -9.38 13.47 -35.23 -0.47 -9.85 16 31 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.09 1.14 5.79 -51.93 -0.30 0.84 16 33 H 0.07 0.92 6.15 -51.92 -0.32 0.60 16 34 H 0.15 1.60 7.62 -52.48 -0.40 1.20 16 35 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.04 0.82 7.07 -51.93 -0.37 0.45 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 43 H 0.04 1.00 5.66 -51.93 -0.29 0.70 16 44 H 0.07 1.47 6.18 -51.93 -0.32 1.15 16 45 H 0.38 4.54 9.12 45.56 0.42 4.95 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -35.36 361.35 -8.62 -43.97 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.87 Total: 4.37 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -4.26 Total: 2.40 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.34 Total: -58.70 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.39 Total: -19.93 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.20 Total: 22.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.36 -8.62 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047607573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.523 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds