Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34782 * 119.99789 * 2 1 4 4 O 1.21502 * 119.99748 * 185.30165 * 3 2 1 5 5 C 1.48269 * 119.99948 * 5.29730 * 3 2 1 6 6 C 1.40284 * 119.24210 * 187.11001 * 5 3 2 7 7 C 1.36502 * 119.82048 * 179.97438 * 6 5 3 8 8 C 1.40753 * 118.24652 * 0.02562 * 7 6 5 9 9 C 1.40416 * 121.29267 * 180.02562 * 8 7 6 10 10 C 1.36131 * 119.65519 * 180.02562 * 9 8 7 11 11 C 1.39429 * 120.91629 * 359.95161 * 10 9 8 12 12 C 1.35997 * 121.08316 * 0.02562 * 11 10 9 13 13 C 1.40827 * 119.73409 * 359.97438 * 12 11 10 14 14 N 1.31874 * 119.24534 * 6.84021 * 5 3 2 15 15 C 1.46505 * 120.00368 * 180.02562 * 2 1 3 16 16 H 1.09000 * 110.64044 * 178.31667 * 15 2 1 17 17 C 1.54330 * 110.71579 * 301.45266 * 15 2 1 18 18 N 1.47023 * 107.27080 * 140.73538 * 17 15 2 19 19 C 1.36930 * 125.64685 * 181.02295 * 18 17 15 20 20 H 1.07990 * 120.00314 * 12.01322 * 19 18 17 21 21 C 1.38814 * 119.99541 * 192.01046 * 19 18 17 22 22 N 1.31621 * 119.99989 * 205.70209 * 21 19 18 23 23 Si 1.86801 * 120.00262 * 25.70475 * 21 19 18 24 24 H 1.48503 * 109.47072 * 269.99761 * 23 21 19 25 25 H 1.48493 * 109.47166 * 149.99848 * 23 21 19 26 26 H 1.48503 * 109.47067 * 29.99872 * 23 21 19 27 27 C 1.47432 * 108.69794 * 1.28348 * 18 17 15 28 28 C 1.55123 * 104.72626 * 335.55435 * 27 18 17 29 29 H 1.08997 * 111.19316 * 279.19041 * 28 27 18 30 30 O 1.42896 * 110.93966 * 155.28774 * 28 27 18 31 31 H 1.09003 * 109.47684 * 275.49264 * 1 2 3 32 32 H 1.09000 * 109.47644 * 35.49498 * 1 2 3 33 33 H 1.09011 * 109.47160 * 155.49459 * 1 2 3 34 34 H 1.08006 * 120.08795 * 0.02562 * 6 5 3 35 35 H 1.08007 * 120.87797 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.16895 * 359.96864 * 9 8 7 37 37 H 1.07997 * 119.54189 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.46182 * 180.02562 * 11 10 9 39 39 H 1.08006 * 120.13248 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.88268 * 21.31702 * 17 15 2 41 41 H 1.09007 * 110.00888 * 260.22363 * 17 15 2 42 42 H 0.97004 * 119.99797 * 354.93659 * 22 21 19 43 43 H 1.09002 * 110.36095 * 94.48657 * 27 18 17 44 44 H 1.08997 * 110.36301 * 216.80426 * 27 18 17 45 45 H 0.96708 * 113.99930 * 67.96019 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3499 1.1695 -0.0972 5 6 1.4021 2.4485 0.1185 6 6 2.0992 3.6564 -0.0336 7 6 1.4326 4.8428 0.0727 8 6 0.0502 4.8091 0.3354 9 6 -0.6982 5.9909 0.4568 10 6 -2.0335 5.9194 0.7118 11 6 -2.6708 4.6873 0.8536 12 6 -1.9787 3.5220 0.7422 13 6 -0.5956 3.5534 0.4788 14 7 0.1057 2.4265 0.3593 15 6 2.1975 -1.2687 -0.0006 16 1 3.2726 -1.0916 -0.0305 17 6 1.8182 -2.1187 1.2305 18 7 1.7366 -3.5179 0.7865 19 6 1.4060 -4.5874 1.5751 20 1 0.9918 -4.4251 2.5591 21 6 1.6031 -5.8802 1.1095 22 7 0.8703 -6.8676 1.5789 23 14 2.9084 -6.2185 -0.1832 24 1 2.3106 -6.0882 -1.5363 25 1 3.4358 -7.5952 -0.0056 26 1 4.0166 -5.2410 -0.0354 27 6 2.0760 -3.5795 -0.6469 28 6 1.7549 -2.1621 -1.1894 29 1 0.6893 -2.0483 -1.3881 30 8 2.5246 -1.8764 -2.3590 31 1 -0.3634 0.0984 1.0229 32 1 -0.3634 0.8367 -0.5967 33 1 -0.3634 -0.9352 -0.4263 34 1 3.1602 3.6476 -0.2351 35 1 1.9523 5.7828 -0.0410 36 1 -0.2168 6.9517 0.3493 37 1 -2.6073 6.8295 0.8052 38 1 -3.7313 4.6580 1.0553 39 1 -2.4879 2.5761 0.8545 40 1 0.8526 -1.7965 1.6201 41 1 2.5814 -2.0185 2.0023 42 1 0.2440 -6.7057 2.3018 43 1 3.1340 -3.8073 -0.7767 44 1 1.4618 -4.3260 -1.1504 45 1 2.2838 -2.4105 -3.1284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047607573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 6.500893 kcal Electronic energy + Delta-G solvation = -29509.441950 eV Core-core repulsion = 25492.811505 eV Total energy + Delta-G solvation = -4016.630445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23619 -41.11313 -39.66418 -37.86508 -36.90725 -36.57445 -34.65851 -34.14258 -31.94355 -31.13483 -30.48280 -29.46756 -28.02081 -26.59719 -25.43312 -24.63273 -23.08549 -22.87983 -22.34495 -20.73585 -19.63663 -19.20233 -19.07289 -18.35997 -18.10145 -17.70204 -16.80701 -16.65834 -16.12525 -16.04759 -15.66695 -15.52518 -15.37925 -15.29173 -15.17543 -14.76589 -14.50918 -14.31468 -14.19396 -14.07362 -13.92955 -13.49503 -13.32506 -13.28655 -12.87437 -12.65811 -12.54611 -12.48591 -12.41594 -11.92184 -11.71673 -11.61536 -11.53406 -11.45675 -11.05267 -10.64324 -10.37027 -9.94968 -9.72469 -9.27016 -9.25648 -8.67815 -5.50500 -0.87325 -0.35631 0.91282 1.31503 1.37084 1.52508 1.62812 1.69607 2.14091 2.46870 2.75337 2.85039 3.06365 3.08918 3.35726 3.49379 3.56885 3.60523 3.74361 3.81449 3.83542 3.89390 4.10801 4.17060 4.25133 4.27560 4.29924 4.38051 4.49882 4.61627 4.67090 4.73570 4.78018 4.82070 4.87231 4.91467 4.99102 5.05568 5.10632 5.32947 5.38740 5.45316 5.50219 5.50728 5.86061 6.04004 6.14314 6.53908 6.72565 6.78542 6.89900 7.36448 8.02176 8.80547 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020830 B = 0.002726 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.878912 B =10268.424756 C =11030.690768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.580 5.580 3 C 0.562 3.438 4 O -0.564 6.564 5 C 0.097 3.903 6 C -0.141 4.141 7 C -0.046 4.046 8 C -0.099 4.099 9 C -0.102 4.102 10 C -0.103 4.103 11 C -0.094 4.094 12 C -0.107 4.107 13 C 0.093 3.907 14 N -0.445 5.445 15 C 0.143 3.857 16 H 0.097 0.903 17 C 0.133 3.867 18 N -0.619 5.619 19 C -0.321 4.321 20 H 0.049 0.951 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 1.100 2.900 24 H -0.262 1.262 25 H -0.302 1.302 26 H -0.277 1.277 27 C 0.075 3.925 28 C 0.099 3.901 29 H 0.092 0.908 30 O -0.563 6.563 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.149 0.851 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.045 0.955 41 H 0.026 0.974 42 H 0.251 0.749 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 31.225 -6.926 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.310 5.310 3 C 0.350 3.650 4 O -0.443 6.443 5 C -0.054 4.054 6 C -0.162 4.162 7 C -0.072 4.072 8 C -0.101 4.101 9 C -0.120 4.120 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.125 4.125 13 C -0.030 4.030 14 N -0.158 5.158 15 C 0.039 3.961 16 H 0.115 0.885 17 C 0.007 3.993 18 N -0.348 5.348 19 C -0.449 4.449 20 H 0.067 0.933 21 C -0.263 4.263 22 N -0.591 5.591 23 Si 0.926 3.074 24 H -0.188 1.188 25 H -0.230 1.230 26 H -0.204 1.204 27 C -0.050 4.050 28 C 0.038 3.962 29 H 0.109 0.891 30 O -0.370 6.370 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.167 0.833 35 H 0.201 0.799 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.254 29.630 -7.362 31.164 hybrid contribution -0.368 0.599 1.259 1.442 sum -6.622 30.229 -6.103 31.542 Atomic orbital electron populations 1.22188 0.76610 1.02942 1.03122 1.47650 1.08678 1.04219 1.70466 1.18450 0.86408 0.83755 0.76359 1.90740 1.14596 1.87194 1.51722 1.21006 0.90584 0.93333 1.00524 1.21781 1.02500 0.91577 1.00316 1.21859 0.92535 0.99322 0.93444 1.19315 0.95148 0.95058 1.00608 1.21386 0.94725 0.97234 0.98680 1.21474 0.94808 0.99158 0.96623 1.21357 1.01833 0.91522 0.96653 1.21076 0.90734 1.00788 0.99939 1.19407 0.95503 0.88174 0.99928 1.68272 1.06456 1.30514 1.10554 1.21833 0.97769 0.82592 0.93929 0.88461 1.21609 0.99034 0.84119 0.94560 1.44635 1.82185 1.02634 1.05329 1.19917 1.38676 0.85955 1.00400 0.93330 1.27025 1.02305 0.90965 1.06044 1.71023 1.24683 1.35516 1.27921 0.83372 0.74856 0.74435 0.74713 1.18804 1.23031 1.20356 1.22805 0.99036 0.97726 0.85479 1.23161 0.95421 0.92206 0.85367 0.89086 1.86478 1.63185 1.65724 1.21654 0.92019 0.88080 0.91564 0.83331 0.79856 0.81938 0.81995 0.82382 0.84226 0.93677 0.95638 0.93968 0.94281 0.91837 0.75060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.58 7.86 127.77 1.00 3.59 16 2 N -0.58 -19.42 2.89 -818.87 -2.36 -21.79 16 3 C 0.56 19.28 7.65 86.91 0.66 19.95 16 4 O -0.56 -22.49 15.69 -3.72 -0.06 -22.55 16 5 C 0.10 2.71 6.57 42.31 0.28 2.99 16 6 C -0.14 -3.12 9.54 22.36 0.21 -2.91 16 7 C -0.05 -0.70 9.88 22.48 0.22 -0.48 16 8 C -0.10 -1.61 5.75 -21.22 -0.12 -1.74 16 9 C -0.10 -0.95 9.77 22.31 0.22 -0.73 16 10 C -0.10 -0.76 9.95 22.07 0.22 -0.54 16 11 C -0.09 -0.91 9.94 22.04 0.22 -0.69 16 12 C -0.11 -1.69 9.99 22.38 0.22 -1.47 16 13 C 0.09 1.94 6.61 40.47 0.27 2.20 16 14 N -0.45 -11.31 6.09 -177.77 -1.08 -12.40 16 15 C 0.14 5.47 3.08 46.18 0.14 5.61 16 16 H 0.10 4.12 7.00 -2.39 -0.02 4.10 16 17 C 0.13 5.75 6.88 86.73 0.60 6.35 16 18 N -0.62 -30.90 3.27 -691.54 -2.26 -33.16 16 19 C -0.32 -18.82 10.43 84.04 0.88 -17.94 16 20 H 0.05 3.06 8.06 -2.92 -0.02 3.04 16 21 C -0.07 -4.07 5.41 84.86 0.46 -3.61 16 22 N -0.95 -60.40 13.70 21.65 0.30 -60.11 16 23 Si 1.10 53.82 24.70 68.60 1.69 55.51 16 24 H -0.26 -11.41 6.59 99.48 0.66 -10.76 16 25 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 26 H -0.28 -13.09 6.27 99.48 0.62 -12.47 16 27 C 0.08 3.22 4.44 86.93 0.39 3.61 16 28 C 0.10 3.50 3.95 32.06 0.13 3.63 16 29 H 0.09 2.91 6.16 -2.39 -0.01 2.89 16 30 O -0.56 -17.81 13.47 -148.98 -2.01 -19.81 16 31 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 32 H 0.10 2.58 5.79 -2.39 -0.01 2.57 16 33 H 0.07 1.81 6.15 -2.38 -0.01 1.79 16 34 H 0.15 3.21 7.62 -2.91 -0.02 3.19 16 35 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 37 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.05 1.90 7.07 -2.39 -0.02 1.88 16 41 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 43 H 0.04 1.75 5.66 -2.39 -0.01 1.73 16 44 H 0.06 2.75 6.18 -2.39 -0.01 2.74 16 45 H 0.40 8.50 9.12 -74.05 -0.68 7.82 16 Total: -1.00 -80.13 361.35 0.41 -79.73 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.19 Total: 16.76 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.00 Total: 17.82 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.41 Total: -127.45 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.07 Total: -42.37 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 1.69 Total: 55.51 kcal Total: -80.13 0.41 -79.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047607573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.227 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds