Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34784 * 120.00301 * 2 1 4 4 O 1.21595 * 120.00277 * 175.39584 * 3 2 1 5 5 C 1.47449 * 119.99435 * 355.39102 * 3 2 1 6 6 C 1.38862 * 120.46443 * 49.30206 * 5 3 2 7 7 C 1.38900 * 120.68089 * 179.76077 * 6 5 3 8 8 C 1.36372 * 121.26632 * 0.51818 * 7 6 5 9 9 C 1.40399 * 119.99039 * 359.73917 * 8 7 6 10 10 C 1.40468 * 121.95036 * 180.02562 * 9 8 7 11 11 N 1.31280 * 119.87677 * 180.02562 * 10 9 8 12 12 C 1.32544 * 122.73505 * 0.02562 * 11 10 9 13 13 C 1.36331 * 121.82284 * 359.97204 * 12 11 10 14 14 C 1.40283 * 118.70204 * 0.02759 * 13 12 11 15 15 C 1.46503 * 120.00210 * 179.97438 * 2 1 3 16 16 H 1.08997 * 110.88722 * 183.87970 * 15 2 1 17 17 C 1.54909 * 111.00429 * 307.80622 * 15 2 1 18 18 N 1.47746 * 104.84021 * 155.16353 * 17 15 2 19 19 C 1.36937 * 125.82146 * 155.82931 * 18 17 15 20 20 H 1.08007 * 119.99902 * 359.93189 * 19 18 17 21 21 C 1.38809 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00170 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47149 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47548 * 119.99093 * 23 21 19 26 26 H 1.48492 * 109.47238 * 239.99721 * 23 21 19 27 27 C 1.47022 * 108.53329 * 335.74941 * 18 17 15 28 28 C 1.54327 * 107.39824 * 1.18256 * 27 18 17 29 29 H 1.09003 * 110.71956 * 263.74981 * 28 27 18 30 30 O 1.42901 * 110.72146 * 140.65710 * 28 27 18 31 31 H 1.09002 * 109.47265 * 275.12089 * 1 2 3 32 32 H 1.08998 * 109.47191 * 35.11447 * 1 2 3 33 33 H 1.08997 * 109.47241 * 155.11722 * 1 2 3 34 34 H 1.08003 * 119.65718 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.36394 * 180.27754 * 7 6 5 36 36 H 1.08004 * 120.00526 * 179.76441 * 8 7 6 37 37 H 1.07997 * 120.05830 * 0.02562 * 10 9 8 38 38 H 1.08003 * 119.08926 * 180.02562 * 12 11 10 39 39 H 1.08005 * 120.64753 * 179.97438 * 13 12 11 40 40 H 1.08995 * 110.36483 * 273.92086 * 17 15 2 41 41 H 1.09002 * 110.36559 * 36.13379 * 17 15 2 42 42 H 0.97002 * 120.00603 * 180.02562 * 22 21 19 43 43 H 1.08991 * 109.88613 * 241.68822 * 27 18 17 44 44 H 1.08995 * 109.88536 * 120.67141 * 27 18 17 45 45 H 0.96697 * 114.00040 * 61.44461 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1689 0.0845 5 6 1.4052 2.4421 -0.1026 6 6 0.3169 2.6964 0.7215 7 6 -0.3745 3.8977 0.6321 8 6 -0.0153 4.8557 -0.2696 9 6 1.0756 4.6391 -1.1265 10 6 1.4815 5.5974 -2.0699 11 7 2.5074 5.3520 -2.8514 12 6 3.1961 4.2209 -2.7962 13 6 2.8809 3.2296 -1.9150 14 6 1.7956 3.4200 -1.0467 15 6 2.1975 -1.2687 0.0006 16 1 3.2717 -1.0972 0.0694 17 6 1.7074 -2.1923 1.1436 18 7 2.0289 -3.5607 0.6885 19 6 2.2211 -4.6495 1.4964 20 1 2.1418 -4.5471 2.5687 21 6 2.5188 -5.8847 0.9374 22 7 2.6158 -6.0095 -0.3693 23 14 2.7804 -7.3702 2.0394 24 1 2.6167 -6.9679 3.4596 25 1 1.7829 -8.4177 1.7033 26 1 4.1497 -7.9056 1.8317 27 6 2.1063 -3.5589 -0.7797 28 6 1.8483 -2.1130 -1.2535 29 1 0.8025 -1.9786 -1.5300 30 8 2.7053 -1.7788 -2.3471 31 1 -0.3634 0.0917 1.0236 32 1 -0.3633 0.8406 -0.5911 33 1 -0.3633 -0.9322 -0.4324 34 1 0.0075 1.9540 1.4424 35 1 -1.2150 4.0750 1.2866 36 1 -0.5696 5.7810 -0.3243 37 1 0.9506 6.5342 -2.1521 38 1 4.0307 4.0810 -3.4673 39 1 3.4549 2.3151 -1.8866 40 1 2.2390 -1.9666 2.0679 41 1 0.6328 -2.0801 1.2877 42 1 2.8235 -6.8727 -0.7600 43 1 1.3482 -4.2248 -1.1917 44 1 3.0969 -3.8824 -1.0991 45 1 2.5773 -2.3313 -3.1302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047628738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 18.083004 kcal Electronic energy + Delta-G solvation = -29719.277810 eV Core-core repulsion = 25703.149603 eV Total energy + Delta-G solvation = -4016.128207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30179 -39.80086 -38.00155 -37.28675 -35.30636 -34.83279 -33.20723 -32.03945 -31.38942 -30.09714 -28.52984 -27.42017 -26.84749 -24.91193 -24.39819 -23.74969 -23.27238 -20.66717 -20.47936 -19.19192 -18.46015 -17.62356 -17.17453 -16.96174 -16.87580 -16.27783 -15.92727 -15.36335 -14.93721 -14.72597 -14.46141 -14.34117 -14.10250 -13.95072 -13.82309 -13.23357 -13.16186 -12.88748 -12.78196 -12.56529 -12.42517 -12.18427 -12.16082 -11.86399 -11.66129 -11.42658 -11.28472 -10.92614 -10.85260 -10.44766 -10.16656 -10.04267 -9.91282 -9.86773 -9.63768 -9.36632 -9.33359 -8.77167 -8.46875 -8.30797 -6.98237 -5.81687 -3.17108 -0.05790 0.61702 1.49768 2.52930 2.80309 3.06533 3.34980 3.40791 3.43099 3.83368 4.14515 4.23087 4.39122 4.41031 4.44660 4.57904 4.62563 4.69484 4.80752 5.06628 5.09598 5.16061 5.26225 5.33575 5.42229 5.44896 5.53710 5.54476 5.58978 5.65931 5.69843 5.72303 5.82822 5.94227 5.97594 6.04132 6.10484 6.35035 6.40741 6.47903 6.51595 6.78567 7.28800 7.39768 7.44275 7.68094 7.74649 8.09948 8.14066 8.16781 9.08530 9.68532 10.31523 11.29762 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.002690 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.764310 B =10407.431239 C =11082.396211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.592 5.592 3 C 0.561 3.439 4 O -0.526 6.526 5 C -0.111 4.111 6 C -0.066 4.066 7 C -0.125 4.125 8 C -0.069 4.069 9 C -0.117 4.117 10 C 0.141 3.859 11 N -0.486 5.486 12 C 0.077 3.923 13 C -0.141 4.141 14 C 0.009 3.991 15 C 0.133 3.867 16 H 0.116 0.884 17 C 0.132 3.868 18 N -0.599 5.599 19 C -0.230 4.230 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.152 3.848 28 C 0.065 3.935 29 H 0.055 0.945 30 O -0.562 6.562 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.049 0.951 41 H 0.027 0.973 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 21.129 -2.365 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.323 5.323 3 C 0.348 3.652 4 O -0.402 6.402 5 C -0.115 4.115 6 C -0.086 4.086 7 C -0.143 4.143 8 C -0.089 4.089 9 C -0.119 4.119 10 C -0.031 4.031 11 N -0.194 5.194 12 C -0.066 4.066 13 C -0.160 4.160 14 C 0.003 3.997 15 C 0.029 3.971 16 H 0.134 0.866 17 C 0.005 3.995 18 N -0.327 5.327 19 C -0.358 4.358 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.746 3.254 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.026 3.974 28 C 0.005 3.995 29 H 0.073 0.927 30 O -0.366 6.366 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.905 21.849 -2.582 23.378 hybrid contribution -0.464 -2.042 0.771 2.231 sum -8.370 19.807 -1.811 21.579 Atomic orbital electron populations 1.21980 0.79810 1.03641 1.01786 1.47668 1.06904 1.05678 1.72081 1.18061 0.87113 0.83199 0.76809 1.90811 1.13337 1.86945 1.49135 1.19917 0.97514 0.95036 0.98990 1.21608 0.92355 0.97429 0.97162 1.20845 1.00632 0.93425 0.99389 1.21128 0.94740 0.99338 0.93724 1.18980 0.98015 0.95230 0.99643 1.23195 0.92504 0.97674 0.89711 1.67419 1.06583 1.21764 1.23643 1.22258 0.98467 0.88680 0.97210 1.22173 0.96764 1.01799 0.95282 1.17866 0.94718 0.92520 0.94600 1.22461 0.98535 0.80928 0.95132 0.86573 1.21821 0.97440 0.85493 0.94762 1.44307 1.83314 1.03218 1.01824 1.19110 1.41543 0.85714 0.89444 0.90055 1.24828 1.01560 0.97801 0.96095 1.69936 1.54746 1.23558 1.08665 0.85991 0.77513 0.82533 0.79383 1.20408 1.21674 1.21619 1.21857 1.02006 0.89057 0.84457 1.23564 0.92105 0.97322 0.86532 0.92682 1.86474 1.63460 1.61347 1.25352 0.92090 0.91187 0.90162 0.84479 0.84799 0.84560 0.81864 0.82691 0.83393 0.93242 0.95529 0.93630 0.93378 0.92091 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 7.65 59.84 0.46 1.26 16 2 N -0.59 -9.10 2.91 -172.74 -0.50 -9.60 16 3 C 0.56 9.07 6.67 -12.51 -0.08 8.99 16 4 O -0.53 -10.43 14.87 5.28 0.08 -10.35 16 5 C -0.11 -1.44 4.91 -104.70 -0.51 -1.96 16 6 C -0.07 -0.63 7.78 -39.11 -0.30 -0.93 16 7 C -0.12 -0.90 9.92 -40.01 -0.40 -1.30 16 8 C -0.07 -0.51 9.78 -39.44 -0.39 -0.89 16 9 C -0.12 -1.20 5.74 -106.88 -0.61 -1.81 16 10 C 0.14 1.36 11.05 -16.95 -0.19 1.17 16 11 N -0.49 -5.77 10.30 -13.11 -0.14 -5.91 16 12 C 0.08 0.93 11.07 -17.93 -0.20 0.73 16 13 C -0.14 -1.92 9.25 -39.50 -0.37 -2.28 16 14 C 0.01 0.11 5.76 -106.55 -0.61 -0.50 16 15 C 0.13 2.51 3.18 -65.78 -0.21 2.30 16 16 H 0.12 2.55 7.02 -51.93 -0.36 2.19 16 17 C 0.13 2.66 6.81 -2.35 -0.02 2.65 16 18 N -0.60 -14.89 3.41 -169.82 -0.58 -15.47 16 19 C -0.23 -6.26 10.29 -15.06 -0.15 -6.42 16 20 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.35 10.31 55.49 0.57 -25.78 16 23 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.15 3.56 5.14 -3.06 -0.02 3.55 16 28 C 0.07 1.23 3.87 -24.89 -0.10 1.13 16 29 H 0.06 0.94 6.46 -51.93 -0.34 0.60 16 30 O -0.56 -10.29 13.40 -35.23 -0.47 -10.76 16 31 H 0.06 0.57 7.09 -51.93 -0.37 0.20 16 32 H 0.07 0.68 6.28 -51.93 -0.33 0.35 16 33 H 0.08 0.94 6.38 -51.93 -0.33 0.61 16 34 H 0.14 1.10 6.32 -52.48 -0.33 0.77 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 37 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.15 2.26 6.41 -52.48 -0.34 1.92 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.50 6.96 -51.93 -0.36 0.14 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 44 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 45 H 0.37 5.35 9.11 45.56 0.42 5.76 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -34.67 363.77 -9.14 -43.81 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.77 Total: 6.49 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -3.79 Total: 5.41 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.64 Total: -56.76 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.39 Total: -21.11 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.67 -9.14 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047628738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.894 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds