Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34780 * 119.99877 * 2 1 4 4 O 1.21605 * 120.00269 * 175.38854 * 3 2 1 5 5 C 1.47445 * 120.00077 * 355.38468 * 3 2 1 6 6 C 1.38950 * 121.16812 * 48.58961 * 5 3 2 7 7 N 1.32205 * 121.31381 * 179.72372 * 6 5 3 8 8 C 1.31193 * 123.69680 * 0.56070 * 7 6 5 9 9 C 1.40393 * 120.91806 * 359.73840 * 8 7 6 10 10 C 1.40384 * 122.14507 * 180.02562 * 9 8 7 11 11 C 1.36234 * 119.48309 * 179.97438 * 10 9 8 12 12 C 1.39292 * 121.10656 * 0.02562 * 11 10 9 13 13 C 1.36435 * 120.94842 * 359.97438 * 12 11 10 14 14 C 1.39691 * 119.43789 * 359.97438 * 13 12 11 15 15 C 1.46502 * 120.00363 * 180.02562 * 2 1 3 16 16 H 1.08996 * 110.88573 * 183.87892 * 15 2 1 17 17 C 1.54908 * 111.00246 * 307.80564 * 15 2 1 18 18 N 1.47744 * 104.84146 * 155.16853 * 17 15 2 19 19 C 1.36937 * 125.82353 * 155.82567 * 18 17 15 20 20 H 1.07997 * 119.99933 * 359.93125 * 19 18 17 21 21 C 1.38815 * 119.99828 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99743 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47077 * 90.00128 * 23 21 19 25 25 H 1.48497 * 109.46999 * 210.00442 * 23 21 19 26 26 H 1.48500 * 109.47128 * 330.00210 * 23 21 19 27 27 C 1.47027 * 108.52688 * 335.74728 * 18 17 15 28 28 C 1.54317 * 107.40417 * 1.18151 * 27 18 17 29 29 H 1.09000 * 110.72651 * 263.75768 * 28 27 18 30 30 O 1.42900 * 110.71991 * 140.47776 * 28 27 18 31 31 H 1.09002 * 109.46854 * 275.20990 * 1 2 3 32 32 H 1.08999 * 109.47525 * 35.20796 * 1 2 3 33 33 H 1.09003 * 109.47016 * 155.21092 * 1 2 3 34 34 H 1.08002 * 119.34584 * 359.97438 * 6 5 3 35 35 H 1.07998 * 119.54644 * 179.72098 * 8 7 6 36 36 H 1.07999 * 120.26330 * 359.95646 * 10 9 8 37 37 H 1.08002 * 119.44833 * 180.02562 * 11 10 9 38 38 H 1.08004 * 119.52729 * 180.02562 * 12 11 10 39 39 H 1.08003 * 120.28604 * 179.97438 * 13 12 11 40 40 H 1.09005 * 110.35955 * 273.91878 * 17 15 2 41 41 H 1.08995 * 110.36912 * 36.13245 * 17 15 2 42 42 H 0.97001 * 120.00152 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.88002 * 241.68673 * 27 18 17 44 44 H 1.09002 * 109.88026 * 120.68050 * 27 18 17 45 45 H 0.96704 * 113.99796 * 61.45859 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3519 1.1690 0.0847 5 6 1.4052 2.4421 -0.1027 6 6 0.3053 2.7059 0.7043 7 7 -0.3514 3.8501 0.6184 8 6 -0.0378 4.8079 -0.2215 9 6 1.0489 4.6702 -1.0996 10 6 1.4075 5.6786 -2.0082 11 6 2.4729 5.4877 -2.8355 12 6 3.2128 4.3082 -2.7957 13 6 2.8920 3.3078 -1.9252 14 6 1.8060 3.4709 -1.0619 15 6 2.1975 -1.2687 -0.0006 16 1 3.2717 -1.0972 0.0684 17 6 1.7075 -2.1933 1.1416 18 7 2.0291 -3.5613 0.6855 19 6 2.2214 -4.6508 1.4925 20 1 2.1421 -4.5492 2.5647 21 6 2.5192 -5.8854 0.9323 22 7 2.6172 -6.0089 -0.3744 23 14 2.7809 -7.3718 2.0331 24 1 1.4837 -8.0614 2.2502 25 1 3.7358 -8.3060 1.3846 26 1 3.3311 -6.9295 3.3396 27 6 2.1064 -3.5581 -0.7827 28 6 1.8484 -2.1119 -1.2554 29 1 0.8026 -1.9772 -1.5317 30 8 2.7083 -1.7754 -2.3460 31 1 -0.3633 0.0933 1.0235 32 1 -0.3634 0.8396 -0.5925 33 1 -0.3633 -0.9330 -0.4309 34 1 -0.0173 1.9630 1.4188 35 1 -0.6239 5.7149 -0.2379 36 1 0.8431 6.5983 -2.0512 37 1 2.7486 6.2640 -3.5340 38 1 4.0529 4.1840 -3.4629 39 1 3.4727 2.3975 -1.9037 40 1 2.2392 -1.9683 2.0662 41 1 0.6330 -2.0812 1.2859 42 1 2.8256 -6.8716 -0.7658 43 1 1.3483 -4.2238 -1.1953 44 1 3.0971 -3.8814 -1.1024 45 1 2.5830 -2.3270 -3.1304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047635186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 18.173845 kcal Electronic energy + Delta-G solvation = -29670.103018 eV Core-core repulsion = 25653.978750 eV Total energy + Delta-G solvation = -4016.124267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14550 -39.66569 -37.84755 -37.57300 -35.28057 -34.81769 -33.07921 -31.88599 -31.43107 -30.10493 -28.50151 -27.39522 -26.87084 -25.16710 -24.21997 -23.73874 -22.94330 -20.71889 -20.47036 -19.14429 -18.49965 -17.71453 -17.38407 -17.11274 -16.66829 -16.12320 -15.95267 -15.31808 -14.91329 -14.69039 -14.42987 -14.28355 -14.12068 -13.91269 -13.85004 -13.39968 -13.09683 -12.80675 -12.62643 -12.54491 -12.35153 -12.24647 -12.14125 -11.92135 -11.52777 -11.40997 -11.26210 -10.92873 -10.81871 -10.39338 -10.18029 -10.12674 -10.02396 -9.85374 -9.53644 -9.35448 -9.30668 -8.75142 -8.45109 -8.32967 -6.96493 -5.79971 -3.15236 -0.09453 0.62411 1.46960 2.61438 2.79677 3.03653 3.36610 3.41984 3.43925 3.78394 4.03669 4.23837 4.32748 4.42097 4.44107 4.59397 4.61239 4.70787 4.88615 4.99558 5.07768 5.17381 5.25773 5.33728 5.36415 5.44980 5.47801 5.55746 5.58589 5.67960 5.72306 5.78688 5.85386 5.98266 6.05910 6.09136 6.20052 6.27697 6.43517 6.52253 6.55090 6.80305 7.30196 7.41003 7.45500 7.63776 7.69470 8.11653 8.14882 8.18242 9.10308 9.70282 10.33393 11.31480 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.002673 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.359567 B =10471.022891 C =11139.972065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.592 5.592 3 C 0.567 3.433 4 O -0.525 6.525 5 C -0.156 4.156 6 C 0.111 3.889 7 N -0.492 5.492 8 C 0.165 3.835 9 C -0.117 4.117 10 C -0.089 4.089 11 C -0.118 4.118 12 C -0.095 4.095 13 C -0.100 4.100 14 C 0.009 3.991 15 C 0.134 3.866 16 H 0.117 0.883 17 C 0.132 3.868 18 N -0.599 5.599 19 C -0.230 4.230 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.916 3.084 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.152 3.848 28 C 0.065 3.935 29 H 0.056 0.944 30 O -0.562 6.562 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.254 0.746 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 22.714 -5.860 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.323 5.323 3 C 0.354 3.646 4 O -0.402 6.402 5 C -0.162 4.162 6 C -0.033 4.033 7 N -0.199 5.199 8 C -0.007 4.007 9 C -0.119 4.119 10 C -0.109 4.109 11 C -0.136 4.136 12 C -0.114 4.114 13 C -0.118 4.118 14 C 0.003 3.997 15 C 0.030 3.970 16 H 0.134 0.866 17 C 0.004 3.996 18 N -0.327 5.327 19 C -0.358 4.358 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.026 3.974 28 C 0.005 3.995 29 H 0.074 0.926 30 O -0.366 6.366 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.076 22.871 -4.782 24.143 hybrid contribution 0.532 -1.472 -0.460 1.632 sum -5.545 21.399 -5.243 22.718 Atomic orbital electron populations 1.21988 0.79746 1.03641 1.01903 1.47663 1.06910 1.05657 1.72085 1.17845 0.86993 0.82937 0.76863 1.90809 1.13282 1.86920 1.49183 1.21960 0.98457 0.95628 1.00118 1.22893 0.89725 0.94073 0.96584 1.67132 1.30365 1.01321 1.21096 1.23240 0.92136 0.96903 0.88429 1.18963 0.98200 0.95011 0.99772 1.20960 0.97281 0.97912 0.94716 1.20973 0.95615 0.97731 0.99296 1.21110 0.99332 0.93134 0.97863 1.21169 0.95825 1.00508 0.94298 1.18854 0.94721 0.91828 0.94262 1.22464 0.98512 0.80872 0.95151 0.86552 1.21831 0.97507 0.85460 0.94776 1.44299 1.83325 1.03220 1.01808 1.19068 1.41579 0.85717 0.89446 0.90091 1.24825 1.01573 0.97790 0.96091 1.69926 1.54733 1.23660 1.08654 0.86061 0.77587 0.82403 0.79359 1.21514 1.21590 1.20568 1.21856 1.01990 0.89030 0.84480 1.23570 0.92095 0.97329 0.86550 0.92626 1.86480 1.63355 1.61347 1.25444 0.91915 0.91391 0.90011 0.81975 0.81760 0.84700 0.85395 0.85218 0.84064 0.93191 0.95455 0.93599 0.93386 0.92096 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 7.65 59.84 0.46 1.31 16 2 N -0.59 -9.36 2.91 -172.74 -0.50 -9.87 16 3 C 0.57 9.43 6.81 -12.51 -0.09 9.34 16 4 O -0.53 -10.55 15.05 5.27 0.08 -10.47 16 5 C -0.16 -2.17 5.08 -102.66 -0.52 -2.69 16 6 C 0.11 1.33 8.98 -17.13 -0.15 1.18 16 7 N -0.49 -5.58 10.22 -12.58 -0.13 -5.71 16 8 C 0.16 1.53 11.00 -17.01 -0.19 1.34 16 9 C -0.12 -1.20 5.74 -106.89 -0.61 -1.82 16 10 C -0.09 -0.68 9.82 -39.50 -0.39 -1.07 16 11 C -0.12 -0.91 9.94 -39.91 -0.40 -1.31 16 12 C -0.10 -0.92 9.96 -39.84 -0.40 -1.32 16 13 C -0.10 -1.28 9.32 -39.69 -0.37 -1.65 16 14 C 0.01 0.11 5.90 -104.74 -0.62 -0.50 16 15 C 0.13 2.55 3.17 -65.78 -0.21 2.34 16 16 H 0.12 2.57 7.02 -51.93 -0.36 2.21 16 17 C 0.13 2.69 6.81 -2.35 -0.02 2.67 16 18 N -0.60 -15.01 3.41 -169.81 -0.58 -15.59 16 19 C -0.23 -6.31 10.29 -15.06 -0.15 -6.46 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.49 10.31 55.49 0.57 -25.92 16 23 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.15 3.59 5.14 -3.06 -0.02 3.57 16 28 C 0.06 1.23 3.88 -24.90 -0.10 1.14 16 29 H 0.06 0.96 6.46 -51.93 -0.34 0.62 16 30 O -0.56 -10.31 13.39 -35.23 -0.47 -10.78 16 31 H 0.06 0.64 7.10 -51.93 -0.37 0.28 16 32 H 0.07 0.74 6.27 -51.93 -0.33 0.41 16 33 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 34 H 0.16 1.70 6.29 -52.49 -0.33 1.37 16 35 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.14 2.09 6.58 -52.48 -0.35 1.74 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.52 6.96 -51.93 -0.36 0.16 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 44 H 0.06 1.63 7.28 -51.93 -0.38 1.25 16 45 H 0.37 5.35 9.11 45.56 0.42 5.76 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -34.39 364.58 -9.19 -43.59 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.77 Total: 6.65 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -3.86 Total: 5.80 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.64 Total: -57.09 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.39 Total: -21.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.39 -9.19 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047635186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds