Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46491 * 120.00428 * 2 1 4 4 C 1.53000 * 109.47570 * 94.99453 * 3 2 1 5 5 H 1.09000 * 112.73637 * 43.09648 * 4 3 2 6 6 C 1.53498 * 113.52269 * 272.31099 * 4 3 2 7 7 C 1.53752 * 83.25983 * 218.97149 * 6 4 3 8 8 N 1.47062 * 113.46997 * 173.84395 * 4 3 2 9 9 C 1.36931 * 136.06290 * 321.92803 * 8 4 3 10 10 H 1.08008 * 119.99567 * 355.22070 * 9 8 4 11 11 C 1.38807 * 120.00370 * 174.94873 * 9 8 4 12 12 N 1.31618 * 119.99979 * 0.27633 * 11 9 8 13 13 Si 1.86803 * 120.00129 * 180.27292 * 11 9 8 14 14 H 1.48502 * 109.47204 * 89.99961 * 13 11 9 15 15 H 1.48493 * 109.47150 * 210.00293 * 13 11 9 16 16 H 1.48508 * 109.47161 * 329.99991 * 13 11 9 17 17 C 1.34775 * 119.99643 * 179.97438 * 2 1 3 18 18 O 1.21709 * 120.00352 * 185.18859 * 17 2 1 19 19 C 1.46578 * 120.00100 * 5.19503 * 17 2 1 20 20 C 1.36570 * 126.56258 * 185.60072 * 19 17 2 21 21 N 1.33321 * 107.65113 * 179.83283 * 20 19 17 22 22 C 1.31631 * 108.95293 * 0.43034 * 21 20 19 23 23 C 1.47713 * 125.53856 * 179.74824 * 22 21 20 24 24 C 1.39642 * 120.14962 * 179.69825 * 23 22 21 25 25 C 1.37944 * 119.84145 * 179.79219 * 24 23 22 26 26 C 1.38366 * 120.15253 * 0.49182 * 25 24 23 27 27 C 1.38373 * 120.30481 * 359.73788 * 26 25 24 28 28 C 1.37934 * 120.15187 * 0.02875 * 27 26 25 29 29 O 1.34201 * 108.92416 * 359.73115 * 22 21 20 30 30 H 1.09003 * 109.46832 * 95.57471 * 1 2 3 31 31 H 1.08995 * 109.47666 * 215.58057 * 1 2 3 32 32 H 1.09006 * 109.46698 * 335.57928 * 1 2 3 33 33 H 1.09005 * 109.47349 * 334.99534 * 3 2 1 34 34 H 1.08996 * 109.47441 * 214.99762 * 3 2 1 35 35 H 1.09010 * 114.20398 * 332.72760 * 6 4 3 36 36 H 1.09005 * 114.20767 * 105.34986 * 6 4 3 37 37 H 1.09000 * 113.46474 * 271.50168 * 7 6 4 38 38 H 1.08997 * 113.55612 * 140.98118 * 7 6 4 39 39 H 0.97008 * 119.99801 * 179.97438 * 12 11 9 40 40 H 1.08000 * 126.17243 * 359.95232 * 20 19 17 41 41 H 1.07997 * 120.07743 * 359.97438 * 24 23 22 42 42 H 1.08000 * 119.91875 * 180.23174 * 25 24 23 43 43 H 1.08003 * 119.84457 * 179.72421 * 26 25 24 44 44 H 1.08004 * 119.92032 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.07739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5614 1.6476 1.4370 5 1 2.9265 0.7997 2.0167 6 6 1.4686 2.4527 2.1537 7 6 2.6677 3.2243 2.7288 8 7 3.4241 2.8350 1.5290 9 6 4.4736 3.3491 0.8154 10 1 4.8907 2.7905 -0.0096 11 6 4.9976 4.5905 1.1484 12 7 4.4893 5.2712 2.1537 13 14 6.4244 5.2951 0.1700 14 1 5.8988 6.0978 -0.9634 15 1 7.2483 6.1618 1.0504 16 1 7.2605 4.1856 -0.3549 17 6 2.1388 -1.1672 0.0005 18 8 3.3522 -1.1695 0.0958 19 6 1.4104 -2.4340 -0.1139 20 6 1.9412 -3.6889 -0.0210 21 7 0.9454 -4.5616 -0.1774 22 6 -0.1760 -3.9004 -0.3719 23 6 -1.5041 -4.5083 -0.5921 24 6 -2.6244 -3.6965 -0.7811 25 6 -3.8609 -4.2710 -0.9905 26 6 -3.9943 -5.6482 -1.0032 27 6 -2.8891 -6.4585 -0.8117 28 6 -1.6459 -5.8974 -0.6061 29 8 0.0833 -2.5841 -0.3375 30 1 -0.3633 -0.0998 -1.0229 31 1 -0.3634 -0.8357 0.5979 32 1 -0.3633 0.9358 0.4249 33 1 1.5727 2.0490 -0.4344 34 1 3.1083 1.1623 -0.5894 35 1 0.8346 3.0376 1.4871 36 1 0.9060 1.8829 2.8932 37 1 3.0609 2.7922 3.6490 38 1 2.4983 4.2983 2.8056 39 1 4.8559 6.1386 2.3867 40 1 2.9797 -3.9307 0.1502 41 1 -2.5225 -2.6214 -0.7665 42 1 -4.7276 -3.6443 -1.1406 43 1 -4.9655 -6.0927 -1.1631 44 1 -3.0002 -7.5327 -0.8233 45 1 -0.7841 -6.5310 -0.4564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085657200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = 89.846055 kcal Electronic energy + Delta-G solvation = -28639.443966 eV Core-core repulsion = 24626.427639 eV Total energy + Delta-G solvation = -4013.016327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.61261 -39.79877 -39.41441 -37.95647 -35.73994 -34.86774 -32.78394 -32.16329 -31.46205 -29.99585 -28.39434 -27.90047 -26.55602 -24.57295 -23.78960 -23.42974 -22.77867 -21.85688 -21.56230 -20.05644 -19.21941 -18.17052 -17.42680 -17.17510 -16.69354 -16.44997 -16.18090 -15.63441 -15.31202 -15.03537 -14.68446 -14.21530 -14.08418 -13.95687 -13.78834 -13.60376 -13.53410 -13.33025 -13.08296 -12.69452 -12.44447 -11.97943 -11.87661 -11.72776 -11.63405 -11.53202 -11.12232 -10.99998 -10.86569 -10.75730 -10.42463 -10.22143 -10.13941 -9.82720 -9.78670 -9.54613 -9.48153 -8.76300 -8.70002 -8.35519 -6.84872 -5.72911 -3.06647 0.04450 0.88806 1.10172 2.05235 2.30190 2.96453 3.08701 3.34729 3.41743 3.47068 3.49337 3.53294 4.32054 4.43949 4.48310 4.52491 4.60253 4.71734 4.87940 4.98782 5.03374 5.09918 5.21031 5.28474 5.35286 5.37991 5.48643 5.52507 5.54507 5.70267 5.75436 5.81344 5.91814 5.93837 5.97004 6.02770 6.14441 6.24247 6.37255 6.38881 6.47711 6.66697 6.82166 7.19091 7.26791 7.38715 7.43800 7.61383 8.02287 8.03726 9.07401 9.73922 10.67120 11.43626 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.002168 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.761724 B =12911.233438 C =13503.155615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.597 5.597 3 C 0.117 3.883 4 C 0.134 3.866 5 H 0.046 0.954 6 C -0.168 4.168 7 C 0.148 3.852 8 N -0.599 5.599 9 C -0.215 4.215 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.912 3.088 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.597 3.403 18 O -0.505 6.505 19 C -0.093 4.093 20 C 0.052 3.948 21 N -0.475 5.475 22 C 0.246 3.754 23 C -0.024 4.024 24 C -0.085 4.085 25 C -0.122 4.122 26 C -0.099 4.099 27 C -0.123 4.123 28 C -0.067 4.067 29 O -0.176 6.176 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.200 0.800 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.485 -21.192 -5.952 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.005 4.005 4 C 0.025 3.975 5 H 0.064 0.936 6 C -0.206 4.206 7 C 0.023 3.977 8 N -0.325 5.325 9 C -0.342 4.342 10 H 0.098 0.902 11 C -0.205 4.205 12 N -0.567 5.567 13 Si 0.742 3.258 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.383 3.617 18 O -0.381 6.381 19 C -0.148 4.148 20 C -0.093 4.093 21 N -0.204 5.204 22 C 0.044 3.956 23 C -0.025 4.025 24 C -0.105 4.105 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.141 4.141 28 C -0.087 4.087 29 O -0.063 6.063 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.217 0.783 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.552 -21.478 -5.981 29.654 hybrid contribution 0.854 1.105 -0.355 1.441 sum -18.699 -20.372 -6.337 28.369 Atomic orbital electron populations 1.21933 0.79211 1.03499 1.01898 1.47816 1.07328 1.06214 1.71525 1.22035 0.96814 0.81719 0.99948 1.22435 0.90432 0.91788 0.92809 0.93639 1.23791 0.96853 0.99822 1.00124 1.22140 0.86505 0.99897 0.89175 1.45670 1.37085 1.21630 1.28134 1.18924 1.06669 0.99204 1.09407 0.90213 1.24789 1.00035 0.96981 0.98651 1.69828 1.43401 1.13938 1.29530 0.86120 0.81823 0.78856 0.79001 1.21521 1.21671 1.20602 1.16455 0.86134 0.80892 0.78260 1.90960 1.11778 1.85404 1.49969 1.23482 0.80404 0.98282 1.12663 1.23598 1.00388 0.86683 0.98622 1.70583 0.97746 1.33928 1.18126 1.24062 0.95155 0.77516 0.98853 1.17334 0.86127 0.93235 1.05804 1.21319 0.91681 1.00244 0.97229 1.21113 0.97191 0.95213 1.00434 1.21426 0.99074 0.93795 0.97420 1.21145 0.92055 1.00475 1.00431 1.21244 0.98527 0.92744 0.96139 1.84730 1.25781 1.27782 1.68008 0.92457 0.91123 0.89800 0.89677 0.89858 0.90500 0.92905 0.96104 0.90421 0.93726 0.78268 0.84882 0.85014 0.85369 0.84976 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.31 59.85 0.56 1.41 16 2 N -0.60 -9.08 2.88 -183.17 -0.53 -9.61 16 3 C 0.12 2.13 5.25 -4.05 -0.02 2.11 16 4 C 0.13 2.80 4.27 -72.39 -0.31 2.49 16 5 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 6 C -0.17 -3.14 8.03 -26.08 -0.21 -3.35 16 7 C 0.15 3.56 7.54 -8.36 -0.06 3.49 16 8 N -0.60 -15.61 3.64 -176.82 -0.64 -16.26 16 9 C -0.21 -6.11 10.55 -15.06 -0.16 -6.27 16 10 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.60 11.42 55.49 0.63 -26.96 16 13 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.60 9.83 7.59 -12.90 -0.10 9.74 16 18 O -0.50 -10.11 16.61 5.18 0.09 -10.03 16 19 C -0.09 -1.29 6.73 -36.82 -0.25 -1.54 16 20 C 0.05 0.68 11.65 -17.51 -0.20 0.47 16 21 N -0.48 -6.05 10.86 -11.44 -0.12 -6.17 16 22 C 0.25 2.85 7.88 -13.77 -0.11 2.74 16 23 C -0.02 -0.22 5.87 -104.98 -0.62 -0.83 16 24 C -0.09 -0.62 9.72 -39.17 -0.38 -1.00 16 25 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 26 C -0.10 -0.50 10.04 -39.48 -0.40 -0.90 16 27 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 28 C -0.07 -0.52 9.69 -39.17 -0.38 -0.90 16 29 O -0.18 -2.12 7.46 2.82 0.02 -2.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.73 5.99 -51.93 -0.31 0.42 16 32 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.08 1.43 7.75 -51.93 -0.40 1.03 16 34 H 0.08 1.72 7.66 -51.93 -0.40 1.32 16 35 H 0.08 1.36 7.93 -51.92 -0.41 0.95 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 2.04 6.91 -51.93 -0.36 1.68 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.13 0.84 7.89 -52.49 -0.41 0.42 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.13 0.35 8.06 -52.48 -0.42 -0.08 16 44 H 0.13 0.46 8.06 -52.48 -0.42 0.03 16 45 H 0.14 1.06 7.83 -52.48 -0.41 0.65 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -34.33 384.35 -9.37 -43.70 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.05 Total: -1.07 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -3.53 Total: 5.15 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.66 Total: -59.00 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.11 Total: -12.12 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.33 -9.37 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.541 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds