Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46491 * 120.00428 * 2 1 4 4 C 1.53000 * 109.47570 * 94.99453 * 3 2 1 5 5 H 1.09000 * 112.73637 * 43.09648 * 4 3 2 6 6 C 1.53498 * 113.52269 * 272.31099 * 4 3 2 7 7 C 1.53752 * 83.25983 * 218.97149 * 6 4 3 8 8 N 1.47062 * 113.46997 * 173.84395 * 4 3 2 9 9 C 1.36931 * 136.06290 * 321.92803 * 8 4 3 10 10 H 1.08008 * 119.99567 * 355.22070 * 9 8 4 11 11 C 1.38807 * 120.00370 * 174.94873 * 9 8 4 12 12 N 1.31618 * 119.99979 * 0.27633 * 11 9 8 13 13 Si 1.86803 * 120.00129 * 180.27292 * 11 9 8 14 14 H 1.48502 * 109.47204 * 89.99961 * 13 11 9 15 15 H 1.48493 * 109.47150 * 210.00293 * 13 11 9 16 16 H 1.48508 * 109.47161 * 329.99991 * 13 11 9 17 17 C 1.34775 * 119.99643 * 179.97438 * 2 1 3 18 18 O 1.21709 * 120.00352 * 185.18859 * 17 2 1 19 19 C 1.46578 * 120.00100 * 5.19503 * 17 2 1 20 20 C 1.36570 * 126.56258 * 185.60072 * 19 17 2 21 21 N 1.33321 * 107.65113 * 179.83283 * 20 19 17 22 22 C 1.31631 * 108.95293 * 0.43034 * 21 20 19 23 23 C 1.47713 * 125.53856 * 179.74824 * 22 21 20 24 24 C 1.39642 * 120.14962 * 179.69825 * 23 22 21 25 25 C 1.37944 * 119.84145 * 179.79219 * 24 23 22 26 26 C 1.38366 * 120.15253 * 0.49182 * 25 24 23 27 27 C 1.38373 * 120.30481 * 359.73788 * 26 25 24 28 28 C 1.37934 * 120.15187 * 0.02875 * 27 26 25 29 29 O 1.34201 * 108.92416 * 359.73115 * 22 21 20 30 30 H 1.09003 * 109.46832 * 95.57471 * 1 2 3 31 31 H 1.08995 * 109.47666 * 215.58057 * 1 2 3 32 32 H 1.09006 * 109.46698 * 335.57928 * 1 2 3 33 33 H 1.09005 * 109.47349 * 334.99534 * 3 2 1 34 34 H 1.08996 * 109.47441 * 214.99762 * 3 2 1 35 35 H 1.09010 * 114.20398 * 332.72760 * 6 4 3 36 36 H 1.09005 * 114.20767 * 105.34986 * 6 4 3 37 37 H 1.09000 * 113.46474 * 271.50168 * 7 6 4 38 38 H 1.08997 * 113.55612 * 140.98118 * 7 6 4 39 39 H 0.97008 * 119.99801 * 179.97438 * 12 11 9 40 40 H 1.08000 * 126.17243 * 359.95232 * 20 19 17 41 41 H 1.07997 * 120.07743 * 359.97438 * 24 23 22 42 42 H 1.08000 * 119.91875 * 180.23174 * 25 24 23 43 43 H 1.08003 * 119.84457 * 179.72421 * 26 25 24 44 44 H 1.08004 * 119.92032 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.07739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5614 1.6476 1.4370 5 1 2.9265 0.7997 2.0167 6 6 1.4686 2.4527 2.1537 7 6 2.6677 3.2243 2.7288 8 7 3.4241 2.8350 1.5290 9 6 4.4736 3.3491 0.8154 10 1 4.8907 2.7905 -0.0096 11 6 4.9976 4.5905 1.1484 12 7 4.4893 5.2712 2.1537 13 14 6.4244 5.2951 0.1700 14 1 5.8988 6.0978 -0.9634 15 1 7.2483 6.1618 1.0504 16 1 7.2605 4.1856 -0.3549 17 6 2.1388 -1.1672 0.0005 18 8 3.3522 -1.1695 0.0958 19 6 1.4104 -2.4340 -0.1139 20 6 1.9412 -3.6889 -0.0210 21 7 0.9454 -4.5616 -0.1774 22 6 -0.1760 -3.9004 -0.3719 23 6 -1.5041 -4.5083 -0.5921 24 6 -2.6244 -3.6965 -0.7811 25 6 -3.8609 -4.2710 -0.9905 26 6 -3.9943 -5.6482 -1.0032 27 6 -2.8891 -6.4585 -0.8117 28 6 -1.6459 -5.8974 -0.6061 29 8 0.0833 -2.5841 -0.3375 30 1 -0.3633 -0.0998 -1.0229 31 1 -0.3634 -0.8357 0.5979 32 1 -0.3633 0.9358 0.4249 33 1 1.5727 2.0490 -0.4344 34 1 3.1083 1.1623 -0.5894 35 1 0.8346 3.0376 1.4871 36 1 0.9060 1.8829 2.8932 37 1 3.0609 2.7922 3.6490 38 1 2.4983 4.2983 2.8056 39 1 4.8559 6.1386 2.3867 40 1 2.9797 -3.9307 0.1502 41 1 -2.5225 -2.6214 -0.7665 42 1 -4.7276 -3.6443 -1.1406 43 1 -4.9655 -6.0927 -1.1631 44 1 -3.0002 -7.5327 -0.8233 45 1 -0.7841 -6.5310 -0.4564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085657200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = 67.347850 kcal Electronic energy + Delta-G solvation = -28640.419562 eV Core-core repulsion = 24626.427639 eV Total energy + Delta-G solvation = -4013.991923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.56973 -41.11537 -39.96666 -39.64368 -36.93803 -35.94711 -34.29041 -33.46847 -31.92986 -31.06227 -29.92263 -29.59241 -27.63726 -25.55644 -25.41305 -24.67574 -23.81013 -22.86774 -22.28288 -21.32185 -20.98557 -19.03345 -18.77238 -18.28355 -18.14676 -17.55807 -17.05410 -16.96575 -16.42277 -16.28961 -15.92722 -15.56768 -15.28922 -15.08977 -14.79846 -14.61789 -14.39536 -14.34015 -14.16087 -13.89511 -13.76001 -13.47216 -13.24892 -12.95776 -12.70858 -12.66705 -12.53080 -12.41045 -12.25649 -12.16714 -11.90568 -11.79653 -11.65491 -11.53111 -11.24958 -10.89995 -10.85506 -9.94634 -9.83773 -9.37273 -8.92738 -7.90873 -5.25851 -0.76371 0.28159 0.43051 1.05491 1.42121 1.43283 1.45592 1.54186 1.79695 1.90991 2.46334 2.67713 2.83626 3.28395 3.37877 3.44836 3.69234 3.79558 3.97565 4.00956 4.08789 4.16649 4.20361 4.25741 4.28476 4.33748 4.47945 4.49432 4.56228 4.59964 4.73459 4.83527 4.84934 4.89147 4.96766 5.00578 5.02792 5.09995 5.20268 5.33471 5.38578 5.47528 5.53929 5.54258 5.69543 5.94008 5.94563 6.07871 6.35299 6.78477 6.90817 7.59011 8.59665 9.25358 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.002168 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.761724 B =12911.233438 C =13503.155615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.593 5.593 3 C 0.133 3.867 4 C 0.133 3.867 5 H 0.026 0.974 6 C -0.128 4.128 7 C 0.138 3.862 8 N -0.629 5.629 9 C -0.224 4.224 10 H 0.075 0.925 11 C -0.065 4.065 12 N -0.950 5.950 13 Si 0.977 3.023 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.276 1.276 17 C 0.596 3.404 18 O -0.554 6.554 19 C -0.114 4.114 20 C 0.057 3.943 21 N -0.497 5.497 22 C 0.264 3.736 23 C -0.056 4.056 24 C -0.088 4.088 25 C -0.123 4.123 26 C -0.089 4.089 27 C -0.125 4.125 28 C -0.077 4.077 29 O -0.170 6.170 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.008 0.992 38 H 0.050 0.950 39 H 0.249 0.751 40 H 0.207 0.793 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.100 -22.601 -7.094 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.324 5.324 3 C 0.009 3.991 4 C 0.026 3.974 5 H 0.044 0.956 6 C -0.166 4.166 7 C 0.012 3.988 8 N -0.355 5.355 9 C -0.353 4.353 10 H 0.093 0.907 11 C -0.258 4.258 12 N -0.599 5.599 13 Si 0.805 3.195 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.201 1.201 17 C 0.384 3.616 18 O -0.434 6.434 19 C -0.169 4.169 20 C -0.087 4.087 21 N -0.225 5.225 22 C 0.062 3.938 23 C -0.058 4.058 24 C -0.108 4.108 25 C -0.140 4.140 26 C -0.107 4.107 27 C -0.143 4.143 28 C -0.096 4.096 29 O -0.057 6.057 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.224 0.776 41 H 0.159 0.841 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.225 -22.921 -7.135 33.402 hybrid contribution 1.780 1.343 0.002 2.230 sum -21.445 -21.577 -7.132 31.247 Atomic orbital electron populations 1.22209 0.76213 1.04828 1.03534 1.47820 1.08989 1.04764 1.70836 1.21640 0.96454 0.83557 0.97413 1.22484 0.90195 0.90050 0.94667 0.95633 1.23567 0.95100 0.98027 0.99916 1.22184 0.89107 0.98895 0.88594 1.46066 1.37155 1.23545 1.28765 1.19193 1.07324 0.99352 1.09385 0.90673 1.25605 1.02770 0.97509 0.99945 1.70007 1.44737 1.14049 1.31068 0.85104 0.78739 0.77978 0.77667 1.20525 1.21924 1.20102 1.16695 0.85740 0.81830 0.77329 1.90924 1.13908 1.86299 1.52311 1.22862 0.81258 0.97181 1.15584 1.23817 1.00958 0.86680 0.97286 1.70637 0.98110 1.33989 1.19792 1.24726 0.95866 0.77193 0.95993 1.17539 0.85433 0.94026 1.08772 1.21519 0.91792 1.00635 0.96812 1.21473 0.97229 0.95935 0.99411 1.21864 1.00102 0.93659 0.95076 1.21456 0.91319 1.01897 0.99588 1.21349 0.99464 0.92264 0.96519 1.84705 1.24656 1.28051 1.68280 0.90579 0.90275 0.88030 0.87745 0.93018 0.88518 0.89274 0.97396 0.93132 0.94214 0.77613 0.84122 0.82446 0.82364 0.82688 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 9.31 127.77 1.19 2.61 16 2 N -0.59 -17.61 2.88 -851.62 -2.46 -20.06 16 3 C 0.13 4.79 5.25 86.38 0.45 5.24 16 4 C 0.13 5.61 4.27 41.79 0.18 5.79 16 5 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.13 -4.57 8.03 31.02 0.25 -4.32 16 7 C 0.14 6.71 7.54 83.27 0.63 7.34 16 8 N -0.63 -33.50 3.64 -713.33 -2.60 -36.10 16 9 C -0.22 -13.11 10.55 84.03 0.89 -12.22 16 10 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 11 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 12 N -0.95 -58.48 11.42 21.65 0.25 -58.23 16 13 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 C 0.60 20.01 7.59 86.42 0.66 20.67 16 18 O -0.55 -23.33 16.61 -4.38 -0.07 -23.40 16 19 C -0.11 -3.17 6.73 24.06 0.16 -3.01 16 20 C 0.06 1.53 11.65 84.08 0.98 2.51 16 21 N -0.50 -12.63 10.86 -304.09 -3.30 -15.93 16 22 C 0.26 5.90 7.88 87.23 0.69 6.59 16 23 C -0.06 -0.95 5.87 -20.10 -0.12 -1.07 16 24 C -0.09 -1.06 9.72 22.54 0.22 -0.84 16 25 C -0.12 -0.91 10.03 22.23 0.22 -0.68 16 26 C -0.09 -0.54 10.04 22.33 0.22 -0.31 16 27 C -0.12 -1.05 10.03 22.23 0.22 -0.83 16 28 C -0.08 -1.08 9.69 22.54 0.22 -0.86 16 29 O -0.17 -3.90 7.46 -12.82 -0.10 -4.00 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.44 5.99 -2.39 -0.01 1.43 16 32 H 0.10 1.64 8.03 -2.38 -0.02 1.62 16 33 H 0.10 3.35 7.75 -2.38 -0.02 3.33 16 34 H 0.05 2.20 7.66 -2.39 -0.02 2.18 16 35 H 0.10 3.11 7.93 -2.38 -0.02 3.09 16 36 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.05 2.72 6.91 -2.39 -0.02 2.71 16 39 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 40 H 0.21 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.14 1.39 7.89 -2.91 -0.02 1.36 16 42 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 43 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 44 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 45 H 0.13 1.96 7.83 -2.91 -0.02 1.94 16 Total: -1.00 -78.27 384.35 2.28 -75.99 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.00 Total: 9.09 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 7.53 Total: 23.24 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -8.11 Total: -130.31 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.17 Total: -27.40 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -78.27 2.28 -75.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.342 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds