Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99660 * 2 1 4 4 C 1.53001 * 109.47244 * 276.99620 * 3 2 1 5 5 H 1.09000 * 112.96478 * 52.74371 * 4 3 2 6 6 C 1.53943 * 113.77190 * 184.42899 * 4 3 2 7 7 C 1.53946 * 86.29127 * 137.90608 * 6 4 3 8 8 N 1.47580 * 86.11729 * 336.39068 * 7 6 4 9 9 C 1.36938 * 134.49339 * 204.63684 * 8 7 6 10 10 H 1.07999 * 119.99991 * 186.95461 * 9 8 7 11 11 C 1.38815 * 119.99737 * 6.95510 * 9 8 7 12 12 N 1.31622 * 120.00195 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46922 * 60.00467 * 13 11 9 15 15 H 1.48504 * 109.47264 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47194 * 300.00524 * 13 11 9 17 17 C 1.34772 * 120.00362 * 179.97438 * 2 1 3 18 18 O 1.21699 * 120.00466 * 184.68093 * 17 2 1 19 19 C 1.46577 * 119.99752 * 4.67763 * 17 2 1 20 20 C 1.36565 * 126.56263 * 173.74674 * 19 17 2 21 21 N 1.33320 * 107.65194 * 180.02562 * 20 19 17 22 22 C 1.31636 * 108.95978 * 359.97438 * 21 20 19 23 23 C 1.47699 * 125.54380 * 179.97438 * 22 21 20 24 24 C 1.39640 * 120.15094 * 0.02776 * 23 22 21 25 25 C 1.37943 * 119.84654 * 179.74694 * 24 23 22 26 26 C 1.38370 * 120.14959 * 0.24594 * 25 24 23 27 27 C 1.38368 * 120.30782 * 0.02562 * 26 25 24 28 28 C 1.37945 * 120.15186 * 0.02562 * 27 26 25 29 29 O 1.34212 * 108.91215 * 0.24508 * 22 21 20 30 30 H 1.08991 * 109.47108 * 264.34977 * 1 2 3 31 31 H 1.09006 * 109.47002 * 24.35126 * 1 2 3 32 32 H 1.09000 * 109.46845 * 144.34975 * 1 2 3 33 33 H 1.08999 * 109.47319 * 36.99532 * 3 2 1 34 34 H 1.09001 * 109.47045 * 157.00042 * 3 2 1 35 35 H 1.08999 * 113.74074 * 252.25346 * 6 4 3 36 36 H 1.08998 * 113.74211 * 23.45568 * 6 4 3 37 37 H 1.08999 * 113.76891 * 90.69417 * 7 6 4 38 38 H 1.09008 * 113.76931 * 221.97433 * 7 6 4 39 39 H 0.96996 * 120.00073 * 179.97438 * 12 11 9 40 40 H 1.08001 * 126.17536 * 0.02562 * 20 19 17 41 41 H 1.08006 * 120.07473 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.92333 * 180.27664 * 25 24 23 43 43 H 1.08002 * 119.84166 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.92441 * 179.97438 * 27 26 25 45 45 H 1.07992 * 120.07746 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3003 1.7983 -1.4318 5 1 1.3344 1.8582 -1.9335 6 6 3.1470 3.0775 -1.5609 7 6 3.7420 2.4359 -2.8275 8 7 3.3507 1.1423 -2.2346 9 6 3.7868 -0.1483 -2.3736 10 1 3.2489 -0.9544 -1.8969 11 6 4.9204 -0.4204 -3.1271 12 7 5.5763 0.5621 -3.7076 13 14 5.5159 -2.1808 -3.3162 14 1 4.4539 -2.9962 -3.9585 15 1 6.7366 -2.2024 -4.1616 16 1 5.8307 -2.7432 -1.9783 17 6 2.1389 -1.1671 0.0005 18 8 3.3529 -1.1689 0.0865 19 6 1.4097 -2.4345 -0.1024 20 6 1.9562 -3.6791 -0.2340 21 7 0.9541 -4.5563 -0.2938 22 6 -0.1880 -3.9078 -0.2044 23 6 -1.5299 -4.5243 -0.2317 24 6 -1.6634 -5.9083 -0.3608 25 6 -2.9196 -6.4779 -0.3804 26 6 -4.0459 -5.6807 -0.2775 27 6 -3.9210 -4.3081 -0.1550 28 6 -2.6709 -3.7251 -0.1351 29 8 0.0652 -2.5947 -0.0904 30 1 -0.3633 -0.1012 1.0226 31 1 -0.3633 0.9363 -0.4238 32 1 -0.3633 -0.8351 -0.5990 33 1 1.6683 1.9938 0.6184 34 1 3.1984 1.1105 0.4015 35 1 2.5597 3.9744 -1.7578 36 1 3.8677 3.2101 -0.7541 37 1 3.2006 2.6824 -3.7408 38 1 4.8197 2.5694 -2.9228 39 1 6.3686 0.3720 -4.2339 40 1 3.0100 -3.9109 -0.2810 41 1 -0.7851 -6.5317 -0.4407 42 1 -3.0242 -7.5486 -0.4757 43 1 -5.0270 -6.1319 -0.2938 44 1 -4.8042 -3.6917 -0.0756 45 1 -2.5749 -2.6537 -0.0399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085657201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 97.744393 kcal Electronic energy + Delta-G solvation = -29808.457897 eV Core-core repulsion = 25795.784068 eV Total energy + Delta-G solvation = -4012.673829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.32118 -39.55782 -39.23384 -37.59604 -35.49130 -34.58315 -32.56570 -32.01848 -31.30726 -29.75947 -28.24330 -27.72729 -26.37734 -24.42048 -23.59214 -23.22687 -22.69204 -21.70881 -21.34412 -19.84166 -19.00538 -17.95833 -17.16286 -17.06522 -16.60267 -16.27045 -15.90158 -15.44995 -15.16395 -14.81196 -14.58934 -13.93864 -13.88903 -13.78769 -13.70258 -13.55384 -13.38635 -13.17052 -12.77933 -12.69855 -12.05132 -11.81544 -11.59045 -11.48466 -11.45659 -11.34462 -11.03494 -10.83620 -10.68477 -10.56778 -10.48533 -9.99147 -9.92623 -9.72312 -9.62631 -9.33121 -9.21261 -8.63107 -8.38934 -8.17232 -6.70747 -5.58990 -2.88759 0.27290 1.03767 1.37055 2.33044 2.57669 3.22336 3.49402 3.51982 3.53387 3.55996 3.59750 3.79053 4.51117 4.58606 4.59380 4.74073 4.78685 5.01105 5.04589 5.13871 5.19956 5.25545 5.30513 5.44651 5.54345 5.56157 5.58104 5.67888 5.68392 5.81565 5.87380 5.96939 5.99515 6.02708 6.10902 6.12103 6.29637 6.33287 6.42540 6.52996 6.69728 6.72960 6.87576 7.34866 7.44647 7.54444 7.68358 7.76291 8.17347 8.45656 9.22871 9.89754 10.74221 11.57175 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.003444 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.301246 B = 8129.247141 C = 9369.852117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.601 5.601 3 C 0.117 3.883 4 C 0.122 3.878 5 H 0.043 0.957 6 C -0.156 4.156 7 C 0.151 3.849 8 N -0.596 5.596 9 C -0.197 4.197 10 H 0.085 0.915 11 C -0.010 4.010 12 N -0.925 5.925 13 Si 0.900 3.100 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.592 3.408 18 O -0.468 6.468 19 C -0.083 4.083 20 C 0.045 3.955 21 N -0.472 5.472 22 C 0.232 3.768 23 C -0.017 4.017 24 C -0.070 4.070 25 C -0.123 4.123 26 C -0.102 4.102 27 C -0.122 4.122 28 C -0.088 4.088 29 O -0.178 6.178 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.199 0.801 41 H 0.140 0.860 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 -6.076 9.674 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C -0.006 4.006 4 C 0.014 3.986 5 H 0.060 0.940 6 C -0.195 4.195 7 C 0.026 3.974 8 N -0.321 5.321 9 C -0.324 4.324 10 H 0.102 0.898 11 C -0.206 4.206 12 N -0.574 5.574 13 Si 0.731 3.269 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.377 3.623 18 O -0.341 6.341 19 C -0.139 4.139 20 C -0.099 4.099 21 N -0.200 5.200 22 C 0.030 3.970 23 C -0.018 4.018 24 C -0.089 4.089 25 C -0.141 4.141 26 C -0.121 4.121 27 C -0.140 4.140 28 C -0.107 4.107 29 O -0.065 6.065 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.215 0.785 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.405 -6.914 9.546 22.704 hybrid contribution 0.190 -0.232 -0.380 0.484 sum -19.215 -7.146 9.166 22.456 Atomic orbital electron populations 1.21910 0.79985 1.03263 1.01417 1.47516 1.06602 1.06100 1.73237 1.22023 0.97868 0.82397 0.98322 1.22671 0.93320 0.91545 0.91109 0.94018 1.23776 0.99227 0.95169 1.01340 1.22301 1.00500 0.83401 0.91227 1.46011 1.35564 1.03680 1.46860 1.19221 1.05974 0.82144 1.25072 0.89758 1.24700 0.97786 0.97154 1.00923 1.69804 1.20203 1.29595 1.37782 0.86346 0.77943 0.84817 0.77808 1.21596 1.21768 1.20508 1.16271 0.86182 0.80676 0.79148 1.91029 1.11067 1.84871 1.47145 1.23685 0.79279 0.98640 1.12254 1.23561 1.00458 0.86895 0.99013 1.70536 0.97233 1.33938 1.18315 1.24022 0.94917 0.78041 0.99992 1.17333 0.85757 0.93232 1.05468 1.21257 0.98637 0.92811 0.96167 1.21129 0.91832 1.00399 1.00699 1.21384 0.98969 0.93875 0.97873 1.21081 0.97060 0.95149 1.00688 1.21296 0.91503 1.00179 0.97760 1.84752 1.24923 1.27559 1.69261 0.92904 0.90611 0.90712 0.91219 0.88548 0.93183 0.90599 0.96162 0.90147 0.94002 0.78458 0.84261 0.85073 0.85496 0.85158 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 9.74 59.85 0.58 1.58 16 2 N -0.60 -10.44 2.88 -183.16 -0.53 -10.96 16 3 C 0.12 2.05 5.36 -4.04 -0.02 2.03 16 4 C 0.12 2.43 4.53 -66.86 -0.30 2.13 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -2.91 7.86 -25.81 -0.20 -3.12 16 7 C 0.15 3.62 7.70 -2.97 -0.02 3.59 16 8 N -0.60 -15.41 3.57 -170.74 -0.61 -16.02 16 9 C -0.20 -5.68 9.11 -15.06 -0.14 -5.82 16 10 H 0.08 2.41 4.23 -52.49 -0.22 2.19 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.63 11.28 55.49 0.63 -28.00 16 13 Si 0.90 23.97 29.55 -169.99 -5.02 18.95 16 14 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 15 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 16 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 17 C 0.59 11.86 5.77 -12.90 -0.07 11.78 16 18 O -0.47 -11.13 13.72 5.19 0.07 -11.06 16 19 C -0.08 -1.50 6.81 -36.82 -0.25 -1.75 16 20 C 0.05 0.80 11.65 -17.51 -0.20 0.60 16 21 N -0.47 -7.81 10.86 -11.44 -0.12 -7.93 16 22 C 0.23 3.44 7.88 -13.77 -0.11 3.33 16 23 C -0.02 -0.20 5.87 -104.98 -0.62 -0.81 16 24 C -0.07 -0.71 9.69 -39.17 -0.38 -1.09 16 25 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 26 C -0.10 -0.70 10.04 -39.48 -0.40 -1.10 16 27 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 28 C -0.09 -0.83 9.72 -39.16 -0.38 -1.21 16 29 O -0.18 -2.73 7.17 2.80 0.02 -2.71 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.07 1.01 5.28 -51.93 -0.27 0.73 16 33 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.10 1.97 7.17 -51.93 -0.37 1.60 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 2.15 6.87 -51.92 -0.36 1.80 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.20 3.39 8.06 -52.49 -0.42 2.96 16 41 H 0.14 1.43 7.83 -52.48 -0.41 1.02 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 1.10 7.89 -52.49 -0.41 0.69 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -35.60 374.26 -9.16 -44.76 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.83 Total: 0.23 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -3.41 Total: 7.10 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.63 Total: -62.91 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.60 -9.16 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.501 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds