Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99660 * 2 1 4 4 C 1.53001 * 109.47244 * 276.99620 * 3 2 1 5 5 H 1.09000 * 112.96478 * 52.74371 * 4 3 2 6 6 C 1.53943 * 113.77190 * 184.42899 * 4 3 2 7 7 C 1.53946 * 86.29127 * 137.90608 * 6 4 3 8 8 N 1.47580 * 86.11729 * 336.39068 * 7 6 4 9 9 C 1.36938 * 134.49339 * 204.63684 * 8 7 6 10 10 H 1.07999 * 119.99991 * 186.95461 * 9 8 7 11 11 C 1.38815 * 119.99737 * 6.95510 * 9 8 7 12 12 N 1.31622 * 120.00195 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99859 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46922 * 60.00467 * 13 11 9 15 15 H 1.48504 * 109.47264 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47194 * 300.00524 * 13 11 9 17 17 C 1.34772 * 120.00362 * 179.97438 * 2 1 3 18 18 O 1.21699 * 120.00466 * 184.68093 * 17 2 1 19 19 C 1.46577 * 119.99752 * 4.67763 * 17 2 1 20 20 C 1.36565 * 126.56263 * 173.74674 * 19 17 2 21 21 N 1.33320 * 107.65194 * 180.02562 * 20 19 17 22 22 C 1.31636 * 108.95978 * 359.97438 * 21 20 19 23 23 C 1.47699 * 125.54380 * 179.97438 * 22 21 20 24 24 C 1.39640 * 120.15094 * 0.02776 * 23 22 21 25 25 C 1.37943 * 119.84654 * 179.74694 * 24 23 22 26 26 C 1.38370 * 120.14959 * 0.24594 * 25 24 23 27 27 C 1.38368 * 120.30782 * 0.02562 * 26 25 24 28 28 C 1.37945 * 120.15186 * 0.02562 * 27 26 25 29 29 O 1.34212 * 108.91215 * 0.24508 * 22 21 20 30 30 H 1.08991 * 109.47108 * 264.34977 * 1 2 3 31 31 H 1.09006 * 109.47002 * 24.35126 * 1 2 3 32 32 H 1.09000 * 109.46845 * 144.34975 * 1 2 3 33 33 H 1.08999 * 109.47319 * 36.99532 * 3 2 1 34 34 H 1.09001 * 109.47045 * 157.00042 * 3 2 1 35 35 H 1.08999 * 113.74074 * 252.25346 * 6 4 3 36 36 H 1.08998 * 113.74211 * 23.45568 * 6 4 3 37 37 H 1.08999 * 113.76891 * 90.69417 * 7 6 4 38 38 H 1.09008 * 113.76931 * 221.97433 * 7 6 4 39 39 H 0.96996 * 120.00073 * 179.97438 * 12 11 9 40 40 H 1.08001 * 126.17536 * 0.02562 * 20 19 17 41 41 H 1.08006 * 120.07473 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.92333 * 180.27664 * 25 24 23 43 43 H 1.08002 * 119.84166 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.92441 * 179.97438 * 27 26 25 45 45 H 1.07992 * 120.07746 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3003 1.7983 -1.4318 5 1 1.3344 1.8582 -1.9335 6 6 3.1470 3.0775 -1.5609 7 6 3.7420 2.4359 -2.8275 8 7 3.3507 1.1423 -2.2346 9 6 3.7868 -0.1483 -2.3736 10 1 3.2489 -0.9544 -1.8969 11 6 4.9204 -0.4204 -3.1271 12 7 5.5763 0.5621 -3.7076 13 14 5.5159 -2.1808 -3.3162 14 1 4.4539 -2.9962 -3.9585 15 1 6.7366 -2.2024 -4.1616 16 1 5.8307 -2.7432 -1.9783 17 6 2.1389 -1.1671 0.0005 18 8 3.3529 -1.1689 0.0865 19 6 1.4097 -2.4345 -0.1024 20 6 1.9562 -3.6791 -0.2340 21 7 0.9541 -4.5563 -0.2938 22 6 -0.1880 -3.9078 -0.2044 23 6 -1.5299 -4.5243 -0.2317 24 6 -1.6634 -5.9083 -0.3608 25 6 -2.9196 -6.4779 -0.3804 26 6 -4.0459 -5.6807 -0.2775 27 6 -3.9210 -4.3081 -0.1550 28 6 -2.6709 -3.7251 -0.1351 29 8 0.0652 -2.5947 -0.0904 30 1 -0.3633 -0.1012 1.0226 31 1 -0.3633 0.9363 -0.4238 32 1 -0.3633 -0.8351 -0.5990 33 1 1.6683 1.9938 0.6184 34 1 3.1984 1.1105 0.4015 35 1 2.5597 3.9744 -1.7578 36 1 3.8677 3.2101 -0.7541 37 1 3.2006 2.6824 -3.7408 38 1 4.8197 2.5694 -2.9228 39 1 6.3686 0.3720 -4.2339 40 1 3.0100 -3.9109 -0.2810 41 1 -0.7851 -6.5317 -0.4407 42 1 -3.0242 -7.5486 -0.4757 43 1 -5.0270 -6.1319 -0.2938 44 1 -4.8042 -3.6917 -0.0756 45 1 -2.5749 -2.6537 -0.0399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085657201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = 73.093900 kcal Electronic energy + Delta-G solvation = -29809.526823 eV Core-core repulsion = 25795.784068 eV Total energy + Delta-G solvation = -4013.742755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.57557 -41.01819 -39.97446 -39.30858 -36.87950 -35.91752 -34.15070 -33.47302 -31.95557 -31.00440 -29.83441 -29.45898 -27.61967 -25.58857 -25.23214 -24.71408 -23.81486 -22.87886 -22.30064 -21.24264 -20.78374 -18.97498 -18.84328 -18.40806 -18.02997 -17.36060 -17.13978 -16.90348 -16.35364 -16.26453 -15.76207 -15.67296 -15.34029 -15.04956 -14.79905 -14.67164 -14.47461 -14.38174 -14.07190 -13.90680 -13.40094 -13.23789 -13.08697 -12.95424 -12.70439 -12.62897 -12.46644 -12.43245 -12.34644 -12.15649 -11.88947 -11.79495 -11.44610 -11.37459 -11.18885 -10.89216 -10.71254 -9.97177 -9.72492 -9.37321 -8.75505 -7.81214 -5.10116 -0.74633 0.28792 0.40481 1.07344 1.33588 1.37871 1.42861 1.44670 1.87529 2.10019 2.49529 2.66958 2.81381 3.33428 3.42382 3.53165 3.67295 3.95496 3.98451 3.99100 4.06462 4.18248 4.24657 4.29198 4.33176 4.38307 4.45637 4.48848 4.54325 4.64746 4.76264 4.81350 4.85658 4.93476 5.02517 5.07490 5.08881 5.12712 5.36760 5.40697 5.44998 5.49727 5.51190 5.69751 5.79239 5.92304 6.07406 6.16345 6.36394 6.98305 7.05372 7.73588 8.65339 9.34979 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.003444 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.301246 B = 8129.247141 C = 9369.852117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.121 3.879 4 C 0.123 3.877 5 H 0.062 0.938 6 C -0.124 4.124 7 C 0.138 3.862 8 N -0.629 5.629 9 C -0.182 4.182 10 H 0.083 0.917 11 C -0.076 4.076 12 N -0.958 5.958 13 Si 0.945 3.055 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.589 3.411 18 O -0.523 6.523 19 C -0.106 4.106 20 C 0.038 3.962 21 N -0.497 5.497 22 C 0.254 3.746 23 C -0.055 4.055 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.088 4.088 27 C -0.120 4.120 28 C -0.089 4.089 29 O -0.166 6.166 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.042 0.958 39 H 0.240 0.760 40 H 0.192 0.808 41 H 0.128 0.872 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.531 -5.930 11.022 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C -0.001 4.001 4 C 0.017 3.983 5 H 0.079 0.921 6 C -0.163 4.163 7 C 0.013 3.987 8 N -0.355 5.355 9 C -0.311 4.311 10 H 0.101 0.899 11 C -0.267 4.267 12 N -0.610 5.610 13 Si 0.775 3.225 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.210 1.210 17 C 0.376 3.624 18 O -0.400 6.400 19 C -0.161 4.161 20 C -0.106 4.106 21 N -0.225 5.225 22 C 0.052 3.948 23 C -0.056 4.056 24 C -0.100 4.100 25 C -0.141 4.141 26 C -0.106 4.106 27 C -0.138 4.138 28 C -0.108 4.108 29 O -0.054 6.054 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.209 0.791 41 H 0.146 0.854 42 H 0.174 0.826 43 H 0.180 0.820 44 H 0.179 0.821 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.685 -6.753 10.920 27.825 hybrid contribution 1.426 -0.388 -0.704 1.637 sum -23.260 -7.141 10.216 26.389 Atomic orbital electron populations 1.22198 0.76947 1.04443 1.03276 1.47693 1.08526 1.05164 1.71708 1.21946 0.97370 0.83514 0.97302 1.22935 0.92755 0.91064 0.91550 0.92087 1.23502 0.98666 0.96171 0.97919 1.22307 0.98617 0.84073 0.93700 1.46412 1.37648 1.03143 1.48293 1.19478 1.05076 0.83905 1.22678 0.89929 1.25309 0.99036 0.99739 1.02602 1.69966 1.20781 1.30547 1.39728 0.85614 0.77470 0.82069 0.77307 1.21311 1.21799 1.20951 1.16570 0.85843 0.81867 0.78144 1.90993 1.13271 1.85839 1.49916 1.23258 0.80289 0.97870 1.14720 1.23629 1.00763 0.87500 0.98679 1.70566 0.97597 1.33966 1.20355 1.24856 0.95851 0.77693 0.96401 1.17556 0.84721 0.94127 1.09194 1.21351 0.99695 0.92265 0.96695 1.21457 0.90970 1.01918 0.99789 1.21875 1.00143 0.93702 0.94886 1.21488 0.97084 0.95885 0.99303 1.21513 0.91589 1.00577 0.97154 1.84752 1.23405 1.27806 1.69417 0.90259 0.87852 0.91413 0.85804 0.91953 0.88546 0.90336 0.96546 0.93948 0.95057 0.79087 0.85366 0.82613 0.82013 0.82060 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 9.74 127.77 1.24 2.87 16 2 N -0.60 -19.87 2.88 -851.63 -2.45 -22.32 16 3 C 0.12 3.99 5.36 86.38 0.46 4.46 16 4 C 0.12 4.65 4.53 45.09 0.20 4.85 16 5 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 6 C -0.12 -4.32 7.86 31.25 0.25 -4.08 16 7 C 0.14 6.70 7.70 86.48 0.67 7.37 16 8 N -0.63 -32.89 3.57 -694.10 -2.48 -35.37 16 9 C -0.18 -10.88 9.11 84.03 0.77 -10.11 16 10 H 0.08 4.90 4.23 -2.91 -0.01 4.89 16 11 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 12 N -0.96 -62.27 11.28 21.65 0.24 -62.02 16 13 Si 0.94 51.74 29.55 68.60 2.03 53.77 16 14 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 15 H -0.29 -15.77 7.11 99.48 0.71 -15.06 16 16 H -0.28 -15.44 7.11 99.48 0.71 -14.73 16 17 C 0.59 24.02 5.77 86.42 0.50 24.52 16 18 O -0.52 -26.05 13.72 -4.35 -0.06 -26.11 16 19 C -0.11 -3.90 6.81 24.06 0.16 -3.73 16 20 C 0.04 1.44 11.65 84.08 0.98 2.41 16 21 N -0.50 -16.94 10.86 -304.09 -3.30 -20.24 16 22 C 0.25 7.48 7.88 87.22 0.69 8.17 16 23 C -0.05 -1.21 5.87 -20.10 -0.12 -1.33 16 24 C -0.08 -1.55 9.69 22.54 0.22 -1.33 16 25 C -0.12 -1.51 10.03 22.23 0.22 -1.28 16 26 C -0.09 -0.79 10.04 22.33 0.22 -0.56 16 27 C -0.12 -1.23 10.03 22.23 0.22 -1.01 16 28 C -0.09 -1.43 9.72 22.54 0.22 -1.21 16 29 O -0.17 -5.01 7.17 -12.91 -0.09 -5.10 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.77 8.03 -2.38 -0.02 1.75 16 32 H 0.07 1.66 5.28 -2.39 -0.01 1.64 16 33 H 0.12 2.77 8.12 -2.39 -0.02 2.75 16 34 H 0.06 2.54 7.17 -2.39 -0.02 2.52 16 35 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.04 2.37 6.87 -2.38 -0.02 2.35 16 39 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.19 7.14 8.06 -2.91 -0.02 7.12 16 41 H 0.13 2.65 7.83 -2.91 -0.02 2.63 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 44 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.14 1.92 7.89 -2.91 -0.02 1.90 16 Total: -1.00 -84.54 374.26 2.28 -82.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.02 Total: 9.39 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 7.37 Total: 25.74 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -7.98 Total: -139.94 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.15 Total: -31.22 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.03 Total: 53.77 kcal Total: -84.54 2.28 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.352 kcal (2) G-P(sol) polarization free energy of solvation -84.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds