Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99780 * 2 1 4 4 C 1.52993 * 109.47349 * 275.69937 * 3 2 1 5 5 H 1.09000 * 112.96531 * 65.99411 * 4 3 2 6 6 C 1.53948 * 113.77074 * 294.31429 * 4 3 2 7 7 C 1.53948 * 86.29260 * 222.08944 * 6 4 3 8 8 N 1.47583 * 113.77203 * 197.82114 * 4 3 2 9 9 C 1.36941 * 134.49250 * 318.94113 * 8 4 3 10 10 H 1.08002 * 119.99850 * 5.20301 * 9 8 4 11 11 C 1.38806 * 119.99911 * 185.19920 * 9 8 4 12 12 N 1.31618 * 120.00463 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99946 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46846 * 89.99834 * 13 11 9 15 15 H 1.48497 * 109.47709 * 209.99991 * 13 11 9 16 16 H 1.48498 * 109.47161 * 330.00504 * 13 11 9 17 17 C 1.34772 * 120.00210 * 179.97438 * 2 1 3 18 18 O 1.21511 * 120.00143 * 176.25108 * 17 2 1 19 19 C 1.48152 * 119.99915 * 356.25618 * 17 2 1 20 20 C 1.40031 * 120.86690 * 36.52811 * 19 17 2 21 21 C 1.38138 * 119.26884 * 180.02562 * 20 19 17 22 22 N 1.31723 * 121.06512 * 0.02562 * 21 20 19 23 23 C 1.32814 * 121.89703 * 359.97438 * 22 21 20 24 24 C 1.47668 * 119.69348 * 180.02562 * 23 22 21 25 25 C 1.36025 * 125.93668 * 359.71304 * 24 23 22 26 26 C 1.40830 * 106.73668 * 179.89064 * 25 24 23 27 27 C 1.34809 * 107.04224 * 0.37391 * 26 25 24 28 28 O 1.34233 * 108.68275 * 359.77311 * 27 26 25 29 29 C 1.39475 * 120.86426 * 216.25299 * 19 17 2 30 30 H 1.09005 * 109.47016 * 94.98419 * 1 2 3 31 31 H 1.08996 * 109.47336 * 214.98067 * 1 2 3 32 32 H 1.09000 * 109.47509 * 334.98566 * 1 2 3 33 33 H 1.09007 * 109.46816 * 155.69850 * 3 2 1 34 34 H 1.09000 * 109.47216 * 35.70502 * 3 2 1 35 35 H 1.09000 * 113.73900 * 336.44025 * 6 4 3 36 36 H 1.09002 * 113.73922 * 107.64117 * 6 4 3 37 37 H 1.08999 * 113.76508 * 137.90414 * 7 6 4 38 38 H 1.08993 * 113.77050 * 269.19638 * 7 6 4 39 39 H 0.96997 * 120.00479 * 179.97438 * 12 11 9 40 40 H 1.08000 * 120.36007 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.47146 * 180.02562 * 21 20 19 42 42 H 1.08004 * 126.63641 * 0.02949 * 25 24 23 43 43 H 1.08006 * 126.48131 * 180.15039 * 26 25 24 44 44 H 1.08002 * 125.65534 * 179.76763 * 27 26 25 45 45 H 1.08008 * 120.55117 * 359.97300 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3284 1.7821 -1.4353 5 1 1.3705 2.0543 -1.8787 6 6 3.1978 0.8875 -2.3374 7 6 3.7992 2.1948 -2.8843 8 7 3.3784 2.8046 -1.6079 9 6 3.7950 3.8853 -0.8772 10 1 3.3635 4.0795 0.0936 11 6 4.7719 4.7310 -1.3843 12 7 5.2975 4.4947 -2.5676 13 14 5.3397 6.2056 -0.3879 14 1 6.4818 5.8098 0.4749 15 1 5.7669 7.2901 -1.3080 16 1 4.2218 6.6890 0.4617 17 6 2.1389 -1.1671 0.0005 18 8 3.3520 -1.1683 -0.0683 19 6 1.4005 -2.4488 0.0849 20 6 0.1664 -2.6105 -0.5568 21 6 -0.4939 -3.8196 -0.4559 22 7 0.0185 -4.8185 0.2331 23 6 1.1853 -4.7138 0.8589 24 6 1.7146 -5.8650 1.6172 25 6 1.1095 -7.0752 1.7569 26 6 1.9622 -7.8657 2.5514 27 6 3.0309 -7.1049 2.8617 28 8 2.8779 -5.8973 2.2959 29 6 1.9192 -3.5276 0.8008 30 1 -0.3633 -0.0893 -1.0238 31 1 -0.3634 -0.8420 0.5891 32 1 -0.3634 0.9312 0.4345 33 1 3.1903 1.1151 0.4230 34 1 1.6564 2.0006 0.5998 35 1 3.9109 0.2722 -1.7887 36 1 2.6280 0.3224 -3.0750 37 1 4.8803 2.1586 -3.0185 38 1 3.2755 2.5888 -3.7552 39 1 5.9799 5.0859 -2.9222 40 1 -0.2646 -1.7986 -1.1237 41 1 -1.4458 -3.9481 -0.9498 42 1 0.1598 -7.3732 1.3375 43 1 1.7905 -8.8872 2.8576 44 1 3.8708 -7.4155 3.4655 45 1 2.8703 -3.4449 1.3058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085662666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 97.081868 kcal Electronic energy + Delta-G solvation = -28726.721055 eV Core-core repulsion = 24714.018496 eV Total energy + Delta-G solvation = -4012.702559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.85544 -40.87973 -39.33756 -37.64687 -35.51230 -33.63577 -32.91084 -32.49610 -32.08408 -29.17105 -28.46456 -27.79273 -26.89688 -24.68737 -24.08061 -23.25170 -22.54185 -21.67312 -21.29423 -19.75603 -18.96881 -18.25498 -17.21844 -16.79706 -16.54425 -16.41169 -16.27794 -16.05153 -15.40190 -15.25633 -14.76871 -14.43096 -14.18395 -13.93004 -13.58987 -13.47233 -13.36943 -13.16728 -13.06520 -12.82580 -12.65340 -12.31530 -12.16641 -11.80278 -11.37901 -11.02992 -10.91155 -10.69794 -10.49627 -10.39047 -10.28087 -10.14492 -9.96290 -9.85021 -9.71129 -9.63655 -9.44754 -8.76940 -8.45681 -8.37863 -6.83136 -5.73049 -3.05178 0.19864 0.62804 1.60873 2.31157 2.37622 2.78319 2.92469 3.41063 3.45179 3.47425 3.54642 3.98122 4.15001 4.31052 4.48946 4.57676 4.63724 4.70732 4.75067 4.89862 5.01858 5.21401 5.25468 5.31736 5.35591 5.44938 5.49786 5.54646 5.57670 5.61619 5.67389 5.78198 5.88560 5.92842 6.08810 6.13057 6.20586 6.36908 6.52158 6.64671 6.73168 6.76489 6.82165 7.30545 7.37253 7.47553 7.54757 7.64496 8.02345 8.15508 9.07940 9.74739 10.65430 11.44502 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002266 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.664395 B =12352.615382 C =13012.551684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.598 5.598 3 C 0.115 3.885 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.224 4.224 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.553 3.447 18 O -0.512 6.512 19 C -0.069 4.069 20 C -0.149 4.149 21 C 0.107 3.893 22 N -0.459 5.459 23 C 0.196 3.804 24 C 0.017 3.983 25 C -0.152 4.152 26 C -0.221 4.221 27 C -0.021 4.021 28 O -0.167 6.167 29 C -0.102 4.102 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.155 0.845 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.153 0.847 44 H 0.208 0.792 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 -22.547 7.889 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.339 3.661 18 O -0.387 6.387 19 C -0.080 4.080 20 C -0.169 4.169 21 C -0.051 4.051 22 N -0.170 5.170 23 C 0.061 3.939 24 C -0.034 4.034 25 C -0.172 4.172 26 C -0.240 4.240 27 C -0.090 4.090 28 O -0.062 6.062 29 C -0.123 4.123 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.172 0.828 41 H 0.187 0.813 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.225 0.775 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.205 -22.716 7.972 27.458 hybrid contribution 0.497 1.593 0.345 1.704 sum -12.708 -21.124 8.317 26.017 Atomic orbital electron populations 1.22189 0.80024 1.03490 1.01591 1.47696 1.06827 1.06265 1.72335 1.21952 0.97780 0.81820 0.99185 1.22506 0.93091 0.89684 0.92708 0.94091 1.23857 0.99577 0.97643 0.98723 1.22105 0.99456 0.86262 0.88225 1.45966 1.34395 1.30253 1.22011 1.18968 1.17235 1.00731 0.98190 0.90405 1.24801 0.99804 0.99002 0.96787 1.69837 1.30302 1.39106 1.17343 0.86162 0.78611 0.82365 0.78856 1.21533 1.21685 1.20732 1.18116 0.87169 0.83101 0.77724 1.90840 1.13019 1.86584 1.48226 1.20371 0.94869 0.94969 0.97820 1.22889 0.94312 1.00124 0.99552 1.22671 0.99667 0.87665 0.95128 1.67293 1.10571 1.32194 1.06964 1.18111 0.90997 0.89587 0.95233 1.19664 0.87082 0.95313 1.01299 1.21892 1.01685 0.92287 1.01324 1.21863 0.95927 1.01919 1.04304 1.24268 1.01529 0.82423 1.00797 1.84059 1.35523 1.34174 1.52420 1.22203 1.00659 0.91485 0.97949 0.91996 0.91026 0.90444 0.88743 0.91062 0.89493 0.94020 0.91564 0.95650 0.93668 0.82764 0.81332 0.82479 0.82926 0.77510 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 8.89 59.85 0.53 1.18 16 2 N -0.60 -8.39 2.80 -182.58 -0.51 -8.90 16 3 C 0.12 2.04 5.41 -4.05 -0.02 2.01 16 4 C 0.13 2.61 4.58 -66.86 -0.31 2.31 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.32 7.24 -25.80 -0.19 -3.50 16 7 C 0.16 4.09 7.39 -2.97 -0.02 4.07 16 8 N -0.60 -15.58 3.57 -170.76 -0.61 -16.19 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 10 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.90 11.52 55.49 0.64 -27.26 16 13 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.55 8.49 7.07 -12.19 -0.09 8.41 16 18 O -0.51 -9.99 14.67 5.36 0.08 -9.91 16 19 C -0.07 -0.85 5.31 -104.69 -0.56 -1.41 16 20 C -0.15 -1.34 7.68 -38.95 -0.30 -1.64 16 21 C 0.11 0.89 11.16 -17.63 -0.20 0.69 16 22 N -0.46 -4.94 10.02 -9.91 -0.10 -5.04 16 23 C 0.20 2.33 6.74 -83.08 -0.56 1.77 16 24 C 0.02 0.19 7.03 -36.53 -0.26 -0.07 16 25 C -0.15 -1.48 10.58 -39.40 -0.42 -1.90 16 26 C -0.22 -1.73 10.89 -39.82 -0.43 -2.17 16 27 C -0.02 -0.17 12.08 29.52 0.36 0.19 16 28 O -0.17 -1.83 10.39 4.75 0.05 -1.79 16 29 C -0.10 -1.28 9.37 -38.61 -0.36 -1.65 16 30 H 0.06 0.47 6.84 -51.93 -0.36 0.12 16 31 H 0.07 0.54 5.83 -51.93 -0.30 0.24 16 32 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 33 H 0.09 1.96 7.31 -51.92 -0.38 1.58 16 34 H 0.07 1.16 7.95 -51.93 -0.41 0.75 16 35 H 0.09 1.95 6.45 -51.93 -0.34 1.62 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.82 7.40 -51.93 -0.38 1.43 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.15 1.06 5.16 -52.49 -0.27 0.79 16 41 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 43 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 44 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.15 1.93 7.90 -52.48 -0.41 1.51 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -35.60 376.82 -8.64 -44.24 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.77 Total: 0.22 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -3.07 Total: 1.56 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.58 Total: -57.39 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.13 Total: -11.70 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.60 -8.64 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085662666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.325 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds