Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99633 * 2 1 4 4 C 1.53004 * 109.47213 * 264.75806 * 3 2 1 5 5 H 1.08997 * 112.96242 * 293.79916 * 4 3 2 6 6 C 1.53947 * 113.76782 * 65.48014 * 4 3 2 7 7 C 1.53946 * 86.28868 * 137.90837 * 6 4 3 8 8 N 1.47581 * 113.76771 * 162.12242 * 4 3 2 9 9 C 1.36932 * 134.49547 * 41.06970 * 8 4 3 10 10 H 1.08005 * 119.99751 * 4.69598 * 9 8 4 11 11 C 1.38810 * 120.00342 * 184.69491 * 9 8 4 12 12 N 1.31623 * 119.99902 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46976 * 90.00258 * 13 11 9 15 15 H 1.48500 * 109.47199 * 210.00529 * 13 11 9 16 16 H 1.48502 * 109.47195 * 330.00067 * 13 11 9 17 17 C 1.34769 * 120.00034 * 180.02562 * 2 1 3 18 18 O 1.21519 * 120.00107 * 183.94164 * 17 2 1 19 19 C 1.48146 * 120.00228 * 3.94857 * 17 2 1 20 20 C 1.40034 * 120.86176 * 330.48004 * 19 17 2 21 21 C 1.38150 * 119.26451 * 180.27967 * 20 19 17 22 22 N 1.31709 * 121.06586 * 359.74223 * 21 20 19 23 23 C 1.32818 * 121.90375 * 0.02562 * 22 21 20 24 24 C 1.47662 * 119.69751 * 180.02562 * 23 22 21 25 25 C 1.36026 * 125.93888 * 359.69389 * 24 23 22 26 26 C 1.40834 * 106.73575 * 179.85347 * 25 24 23 27 27 C 1.34806 * 107.03948 * 0.40894 * 26 25 24 28 28 O 1.34223 * 108.69014 * 359.74610 * 27 26 25 29 29 C 1.39469 * 120.87009 * 150.26323 * 19 17 2 30 30 H 1.08997 * 109.47319 * 272.54235 * 1 2 3 31 31 H 1.08999 * 109.47653 * 32.54499 * 1 2 3 32 32 H 1.09001 * 109.47246 * 152.54265 * 1 2 3 33 33 H 1.09001 * 109.47342 * 24.75955 * 3 2 1 34 34 H 1.08999 * 109.46474 * 144.75858 * 3 2 1 35 35 H 1.09003 * 113.74026 * 252.25271 * 6 4 3 36 36 H 1.08996 * 113.74269 * 23.45371 * 6 4 3 37 37 H 1.09002 * 113.76910 * 90.69529 * 7 6 4 38 38 H 1.08998 * 113.76750 * 221.97639 * 7 6 4 39 39 H 0.96998 * 119.99841 * 179.97438 * 12 11 9 40 40 H 1.07998 * 120.37048 * 0.02562 * 20 19 17 41 41 H 1.07998 * 119.46489 * 179.73119 * 21 20 19 42 42 H 1.08003 * 126.63395 * 359.97438 * 25 24 23 43 43 H 1.07997 * 126.47825 * 180.13532 * 26 25 24 44 44 H 1.08002 * 125.65555 * 179.72496 * 27 26 25 45 45 H 1.08007 * 120.55263 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.5666 1.6446 -1.4365 5 1 3.2809 0.9551 -1.8863 6 6 1.3506 1.9489 -2.3302 7 6 2.1747 3.1280 -2.8784 8 7 2.9245 3.0663 -1.6061 9 6 3.6561 3.9653 -0.8771 10 1 4.1802 3.6418 0.0102 11 6 3.7241 5.2925 -1.2782 12 7 3.0850 5.6868 -2.3592 13 14 4.7216 6.5190 -0.2832 14 1 6.1160 6.5523 -0.7929 15 1 4.1157 7.8688 -0.4103 16 1 4.7261 6.1110 1.1446 17 6 2.1389 -1.1671 -0.0005 18 8 3.3519 -1.1684 0.0718 19 6 1.4008 -2.4486 -0.0894 20 6 0.1028 -2.5670 0.4225 21 6 -0.5528 -3.7792 0.3271 22 7 0.0214 -4.8196 -0.2409 23 6 1.2485 -4.7557 -0.7451 24 6 1.8452 -5.9523 -1.3717 25 6 1.2524 -7.1708 -1.4906 26 6 2.1735 -8.0072 -2.1505 27 6 3.2753 -7.2688 -2.3915 28 8 3.0735 -6.0285 -1.9199 29 6 1.9789 -3.5672 -0.6892 30 1 -0.3634 0.0456 1.0266 31 1 -0.3634 0.8663 -0.5528 32 1 -0.3634 -0.9119 -0.4738 33 1 1.5709 2.0501 0.4304 34 1 3.1060 1.1637 0.5930 35 1 1.1453 1.1753 -3.0702 36 1 0.4629 2.2522 -1.7752 37 1 2.7748 2.8757 -3.7527 38 1 1.5984 4.0440 -3.0082 39 1 3.1323 6.6143 -2.6393 40 1 -0.3788 -1.7212 0.8905 41 1 -1.5523 -3.8754 0.7248 42 1 0.2655 -7.4436 -1.1472 43 1 2.0267 -9.0452 -2.4101 44 1 4.1719 -7.6175 -2.8824 45 1 2.9766 -3.5160 -1.0997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085662667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 105.807561 kcal Electronic energy + Delta-G solvation = -28687.395218 eV Core-core repulsion = 24675.071034 eV Total energy + Delta-G solvation = -4012.324184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.84726 -40.93634 -39.32243 -37.78540 -35.54670 -33.64461 -32.93628 -32.49222 -32.10485 -29.28338 -28.44977 -27.87090 -26.92060 -24.64764 -24.08497 -23.33911 -22.56935 -21.67550 -21.26497 -19.83694 -19.08988 -18.25615 -17.25397 -16.75786 -16.65418 -16.40010 -16.33136 -15.69124 -15.52117 -15.41347 -14.72898 -14.41229 -14.28886 -14.03308 -13.58486 -13.52764 -13.30341 -13.15572 -13.09128 -12.83866 -12.56907 -12.40816 -12.20209 -11.74333 -11.42554 -11.06742 -10.90815 -10.70129 -10.49197 -10.38889 -10.35852 -10.15991 -9.95391 -9.84575 -9.76985 -9.69013 -9.53153 -8.77287 -8.48282 -8.36966 -6.86855 -5.74906 -3.08616 0.18253 0.60961 1.60799 2.31445 2.38370 2.74675 2.96053 3.39893 3.45165 3.46444 3.56087 3.98186 4.13840 4.29095 4.46970 4.55155 4.63488 4.71475 4.74994 4.89594 5.04162 5.17605 5.24365 5.28454 5.35701 5.42485 5.49334 5.53862 5.60758 5.61567 5.66590 5.74433 5.82860 5.91997 6.12659 6.15398 6.19956 6.23167 6.38543 6.53108 6.68662 6.74065 6.77348 7.24846 7.36729 7.45487 7.47045 7.59879 8.00022 8.11423 9.05791 9.72308 10.61501 11.41239 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.002265 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.345351 B =12357.351765 C =12887.997745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.594 5.594 3 C 0.118 3.882 4 C 0.130 3.870 5 H 0.047 0.953 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.551 3.449 18 O -0.523 6.523 19 C -0.072 4.072 20 C -0.157 4.157 21 C 0.106 3.894 22 N -0.459 5.459 23 C 0.196 3.804 24 C 0.016 3.984 25 C -0.151 4.151 26 C -0.221 4.221 27 C -0.021 4.021 28 O -0.166 6.166 29 C -0.099 4.099 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.153 0.847 44 H 0.208 0.792 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 -24.492 2.819 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.326 5.326 3 C -0.005 4.005 4 C 0.022 3.978 5 H 0.064 0.936 6 C -0.197 4.197 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.338 3.662 18 O -0.399 6.399 19 C -0.083 4.083 20 C -0.177 4.177 21 C -0.052 4.052 22 N -0.169 5.169 23 C 0.061 3.939 24 C -0.034 4.034 25 C -0.172 4.172 26 C -0.240 4.240 27 C -0.090 4.090 28 O -0.061 6.061 29 C -0.120 4.120 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.225 0.775 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.651 -24.628 2.881 26.608 hybrid contribution 1.044 1.292 0.381 1.704 sum -8.608 -23.336 3.262 25.086 Atomic orbital electron populations 1.22560 0.79997 1.04411 1.01700 1.47709 1.06967 1.06167 1.71800 1.21891 0.97035 0.82194 0.99399 1.22521 0.93925 0.88661 0.92700 0.93563 1.23764 0.97427 0.99437 0.99027 1.22303 0.90819 0.95583 0.88220 1.46065 1.60817 1.04079 1.21842 1.19020 1.22871 0.87905 1.05129 0.90391 1.24774 1.00750 0.96855 0.98015 1.69821 1.46070 1.16020 1.24861 0.86142 0.79590 0.80795 0.79376 1.21650 1.21658 1.20598 1.18162 0.87100 0.83214 0.77736 1.90823 1.13171 1.86864 1.49036 1.20357 0.94591 0.94745 0.98565 1.23164 0.94234 1.00426 0.99878 1.22691 1.00038 0.87215 0.95302 1.67281 1.09178 1.32118 1.08364 1.18118 0.90230 0.89304 0.96296 1.19657 0.84839 0.94693 1.04205 1.21891 1.01527 0.91709 1.02033 1.21861 0.94620 1.01742 1.05815 1.24270 1.01269 0.81579 1.01846 1.84064 1.31171 1.32246 1.58658 1.22227 1.01281 0.91179 0.97304 0.91941 0.90041 0.89777 0.89355 0.90341 0.93424 0.90884 0.95923 0.90358 0.93711 0.82023 0.81312 0.82477 0.82921 0.77503 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 8.57 59.85 0.51 1.04 16 2 N -0.59 -8.44 2.78 -182.58 -0.51 -8.95 16 3 C 0.12 2.10 5.31 -4.04 -0.02 2.08 16 4 C 0.13 2.70 4.54 -66.86 -0.30 2.40 16 5 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -2.95 7.21 -25.79 -0.19 -3.13 16 7 C 0.16 3.69 7.64 -2.85 -0.02 3.67 16 8 N -0.60 -15.41 3.58 -169.71 -0.61 -16.01 16 9 C -0.22 -6.20 10.51 -15.06 -0.16 -6.36 16 10 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.28 11.32 55.49 0.63 -26.65 16 13 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.55 8.55 7.47 -12.20 -0.09 8.46 16 18 O -0.52 -10.25 16.43 5.35 0.09 -10.16 16 19 C -0.07 -0.89 5.53 -104.70 -0.58 -1.47 16 20 C -0.16 -1.39 7.58 -38.94 -0.30 -1.68 16 21 C 0.11 0.87 11.16 -17.64 -0.20 0.67 16 22 N -0.46 -4.95 10.02 -9.92 -0.10 -5.05 16 23 C 0.20 2.36 6.75 -83.08 -0.56 1.80 16 24 C 0.02 0.19 7.03 -36.53 -0.26 -0.07 16 25 C -0.15 -1.50 10.58 -39.39 -0.42 -1.91 16 26 C -0.22 -1.77 10.89 -39.82 -0.43 -2.20 16 27 C -0.02 -0.17 12.08 29.52 0.36 0.19 16 28 O -0.17 -1.87 10.39 4.76 0.05 -1.82 16 29 C -0.10 -1.27 9.34 -38.61 -0.36 -1.63 16 30 H 0.06 0.45 7.38 -51.93 -0.38 0.06 16 31 H 0.08 0.79 6.45 -51.93 -0.33 0.46 16 32 H 0.08 0.66 4.79 -51.93 -0.25 0.41 16 33 H 0.09 1.55 8.03 -51.93 -0.42 1.14 16 34 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.25 6.86 -51.93 -0.36 0.90 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 2.02 6.98 -51.93 -0.36 1.66 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.16 1.02 4.65 -52.49 -0.24 0.77 16 41 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.15 2.01 7.83 -52.48 -0.41 1.60 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -35.30 376.36 -8.56 -43.86 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.65 Total: 0.32 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.11 Total: 1.54 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.59 Total: -56.67 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.14 Total: -11.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.30 -8.56 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085662667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.670 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds