Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46493 * 120.00260 * 2 1 4 4 C 1.52994 * 109.47556 * 277.53617 * 3 2 1 5 5 H 1.08998 * 112.96735 * 47.97866 * 4 3 2 6 6 C 1.53950 * 113.77025 * 179.65960 * 4 3 2 7 7 C 1.53946 * 86.28983 * 137.90700 * 6 4 3 8 8 N 1.47578 * 86.11626 * 336.39266 * 7 6 4 9 9 C 1.36943 * 134.49032 * 204.63648 * 8 7 6 10 10 H 1.08002 * 119.99557 * 188.80186 * 9 8 7 11 11 C 1.38810 * 119.99837 * 8.80878 * 9 8 7 12 12 N 1.31614 * 120.00135 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99711 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47436 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47244 * 119.99832 * 13 11 9 16 16 H 1.48497 * 109.47458 * 239.99672 * 13 11 9 17 17 C 1.34777 * 119.99856 * 180.02562 * 2 1 3 18 18 O 1.21634 * 120.00285 * 187.03143 * 17 2 1 19 19 C 1.47143 * 120.00125 * 7.03476 * 17 2 1 20 20 C 1.37946 * 120.54867 * 325.80519 * 19 17 2 21 21 N 1.33953 * 122.20188 * 179.97438 * 20 19 17 22 22 H 0.96996 * 118.60115 * 180.02562 * 21 20 19 23 23 C 1.37801 * 122.80602 * 0.02562 * 21 20 19 24 24 C 1.39280 * 120.52636 * 180.31753 * 23 21 20 25 25 C 1.37740 * 119.97187 * 180.22742 * 24 23 21 26 26 C 1.38785 * 120.72287 * 359.44522 * 25 24 23 27 27 C 1.37713 * 120.29472 * 0.28401 * 26 25 24 28 28 C 1.39497 * 119.60741 * 359.97438 * 27 26 25 29 29 C 1.47145 * 120.55465 * 145.82547 * 19 17 2 30 30 O 1.21853 * 121.40971 * 359.97438 * 29 19 17 31 31 H 1.09006 * 109.46803 * 276.49939 * 1 2 3 32 32 H 1.09003 * 109.47593 * 36.50075 * 1 2 3 33 33 H 1.08998 * 109.47468 * 156.50164 * 1 2 3 34 34 H 1.09007 * 109.46656 * 37.53897 * 3 2 1 35 35 H 1.09000 * 109.47112 * 157.53372 * 3 2 1 36 36 H 1.08997 * 113.74100 * 252.25484 * 6 4 3 37 37 H 1.09001 * 113.74212 * 23.45332 * 6 4 3 38 38 H 1.08997 * 113.76780 * 90.69148 * 7 6 4 39 39 H 1.08992 * 113.77211 * 221.97629 * 7 6 4 40 40 H 0.97001 * 120.00040 * 179.97438 * 12 11 9 41 41 H 1.07995 * 118.90042 * 359.97438 * 20 19 17 42 42 H 1.08001 * 120.01535 * 359.97021 * 24 23 21 43 43 H 1.08000 * 119.63421 * 179.72448 * 25 24 23 44 44 H 1.08002 * 119.85219 * 180.29521 * 26 25 24 45 45 H 1.08000 * 120.19436 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.2887 1.8050 -1.4299 5 1 1.3319 1.7898 -1.9517 6 6 3.0361 3.1461 -1.5431 7 6 3.7055 2.5530 -2.7962 8 7 3.4033 1.2328 -2.2098 9 6 3.9412 -0.0200 -2.3381 10 1 3.4416 -0.8698 -1.8969 11 6 5.1285 -0.1976 -3.0350 12 7 5.7370 0.8381 -3.5729 13 14 5.8625 -1.9064 -3.2092 14 1 4.9923 -2.8918 -2.5187 15 1 5.9633 -2.2575 -4.6486 16 1 7.2159 -1.9285 -2.5985 17 6 2.1388 -1.1672 -0.0005 18 8 3.3483 -1.1713 0.1284 19 6 1.4114 -2.4367 -0.1572 20 6 0.1462 -2.5895 0.3709 21 7 -0.5458 -3.7298 0.2475 22 1 -1.4318 -3.7799 0.6390 23 6 -0.0527 -4.8348 -0.4119 24 6 -0.8163 -5.9948 -0.5175 25 6 -0.3104 -7.0942 -1.1751 26 6 0.9534 -7.0584 -1.7477 27 6 1.7237 -5.9202 -1.6603 28 6 1.2262 -4.8010 -0.9926 29 6 2.0216 -3.5643 -0.8792 30 8 3.1363 -3.4794 -1.3639 31 1 -0.3633 0.1163 1.0211 32 1 -0.3634 0.8261 -0.6113 33 1 -0.3634 -0.9424 -0.4097 34 1 1.6734 1.9907 0.6262 35 1 3.2016 1.1084 0.3927 36 1 2.3852 3.9948 -1.7534 37 1 3.7273 3.3340 -0.7216 38 1 3.1656 2.7569 -3.7208 39 1 4.7711 2.7698 -2.8693 40 1 6.5669 0.7140 -4.0595 41 1 -0.3014 -1.7622 0.9015 42 1 -1.8032 -6.0336 -0.0803 43 1 -0.9054 -7.9924 -1.2499 44 1 1.3344 -7.9271 -2.2642 45 1 2.7067 -5.8940 -2.1067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085691763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 72.752056 kcal Electronic energy + Delta-G solvation = -30599.747843 eV Core-core repulsion = 26585.990265 eV Total energy + Delta-G solvation = -4013.757579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.18359 -39.35358 -37.79888 -37.59357 -37.02319 -34.88534 -32.18368 -31.72451 -31.07772 -30.06229 -28.20310 -27.51786 -26.42617 -24.25263 -23.97979 -22.98767 -22.41077 -22.10687 -19.89763 -18.86046 -18.57687 -18.20787 -17.63518 -16.55683 -16.10396 -15.77262 -15.52743 -15.17257 -14.97345 -14.76853 -14.38974 -14.33662 -14.08547 -13.66466 -13.48831 -13.30979 -13.16829 -13.01915 -12.52132 -12.43286 -12.29885 -12.15394 -11.63582 -11.44730 -11.32731 -11.16243 -10.82680 -10.62355 -10.39900 -10.04323 -9.72815 -9.49308 -9.38955 -9.29636 -9.19951 -9.10131 -8.82200 -8.36158 -7.99425 -7.76830 -6.47586 -5.32623 -2.65317 0.64976 0.72243 1.56332 2.60147 2.88538 3.31124 3.64164 3.77789 3.84338 4.05743 4.12867 4.16234 4.38080 4.51244 4.61592 4.82493 4.90587 4.92173 5.06824 5.10034 5.31769 5.32982 5.41471 5.51421 5.62790 5.65289 5.74145 5.77703 5.80010 5.84171 6.00368 6.10777 6.16046 6.19513 6.37615 6.40055 6.49600 6.54625 6.73763 6.81205 6.85982 6.90664 7.11612 7.51418 7.71364 7.93112 8.03907 8.19687 8.47560 8.95312 9.53363 10.18462 10.97372 11.83283 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004609 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.921307 B = 6073.433177 C = 7871.018399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.615 5.615 3 C 0.119 3.881 4 C 0.124 3.876 5 H 0.039 0.961 6 C -0.157 4.157 7 C 0.148 3.852 8 N -0.595 5.595 9 C -0.194 4.194 10 H 0.100 0.900 11 C -0.012 4.012 12 N -0.935 5.935 13 Si 0.880 3.120 14 H -0.233 1.233 15 H -0.305 1.305 16 H -0.300 1.300 17 C 0.569 3.431 18 O -0.476 6.476 19 C -0.302 4.302 20 C 0.169 3.831 21 N -0.604 5.604 22 H 0.418 0.582 23 C 0.183 3.817 24 C -0.174 4.174 25 C -0.064 4.064 26 C -0.157 4.157 27 C -0.030 4.030 28 C -0.179 4.179 29 C 0.417 3.583 30 O -0.422 6.422 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.244 0.756 41 H 0.180 0.820 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.242 -10.136 10.647 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.351 5.351 3 C -0.004 4.004 4 C 0.015 3.985 5 H 0.056 0.944 6 C -0.196 4.196 7 C 0.022 3.978 8 N -0.321 5.321 9 C -0.321 4.321 10 H 0.117 0.883 11 C -0.206 4.206 12 N -0.585 5.585 13 Si 0.710 3.290 14 H -0.156 1.156 15 H -0.233 1.233 16 H -0.227 1.227 17 C 0.356 3.644 18 O -0.347 6.347 19 C -0.314 4.314 20 C 0.039 3.961 21 N -0.213 5.213 22 H 0.254 0.746 23 C 0.081 3.919 24 C -0.195 4.195 25 C -0.083 4.083 26 C -0.176 4.176 27 C -0.049 4.049 28 C -0.183 4.183 29 C 0.296 3.704 30 O -0.297 6.297 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.197 0.803 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.637 -10.364 10.338 25.302 hybrid contribution -0.289 -0.804 -0.227 0.884 sum -20.926 -11.167 10.111 25.785 Atomic orbital electron populations 1.22241 0.81969 1.03440 1.00523 1.47576 1.05514 1.06454 1.75534 1.21887 0.98000 0.82658 0.97899 1.22634 0.92723 0.91652 0.91485 0.94427 1.23784 0.99397 0.95040 1.01378 1.22315 1.00251 0.84076 0.91128 1.46081 1.32120 1.05556 1.48351 1.19586 1.02166 0.83335 1.26999 0.88275 1.24679 0.97420 0.97092 1.01449 1.69851 1.18885 1.28187 1.41570 0.86377 0.79613 0.86498 0.76463 1.15596 1.23305 1.22733 1.17276 0.87034 0.82033 0.78070 1.90923 1.12803 1.85966 1.45050 1.22137 0.96154 0.99209 1.13875 1.22635 0.91671 0.87797 0.93971 1.40760 1.19202 1.10291 1.51089 0.74647 1.17897 0.93076 0.87210 0.93683 1.20644 1.00445 0.92415 1.05950 1.21060 0.95301 0.97441 0.94506 1.21136 0.95048 0.98702 1.02761 1.21229 0.99810 0.90664 0.93185 1.20381 0.94648 0.98187 1.05088 1.19489 0.86925 0.84925 0.79070 1.90961 1.17670 1.82044 1.38994 0.92917 0.91186 0.90615 0.91866 0.88603 0.93483 0.90758 0.96514 0.90104 0.94632 0.80349 0.85110 0.85221 0.85188 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.88 59.84 0.53 1.18 16 2 N -0.62 -10.48 2.88 -182.96 -0.53 -11.01 16 3 C 0.12 2.20 5.43 -4.05 -0.02 2.18 16 4 C 0.12 2.61 4.53 -66.86 -0.30 2.31 16 5 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 6 C -0.16 -3.14 7.86 -25.80 -0.20 -3.34 16 7 C 0.15 3.77 7.75 -2.98 -0.02 3.75 16 8 N -0.60 -16.47 3.56 -170.76 -0.61 -17.08 16 9 C -0.19 -6.06 9.50 -15.06 -0.14 -6.20 16 10 H 0.10 3.14 4.33 -52.49 -0.23 2.91 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 12 N -0.94 -31.09 11.26 55.49 0.63 -30.47 16 13 Si 0.88 26.13 29.55 -169.99 -5.02 21.11 16 14 H -0.23 -6.92 5.14 56.52 0.29 -6.63 16 15 H -0.30 -8.99 7.11 56.52 0.40 -8.59 16 16 H -0.30 -9.01 7.11 56.52 0.40 -8.61 16 17 C 0.57 11.74 5.86 -12.65 -0.07 11.66 16 18 O -0.48 -12.53 13.19 -9.14 -0.12 -12.65 16 19 C -0.30 -5.13 5.64 -102.78 -0.58 -5.71 16 20 C 0.17 1.71 8.54 -16.73 -0.14 1.57 16 21 N -0.60 -4.61 5.21 -10.42 -0.05 -4.66 16 22 H 0.42 1.22 8.73 -40.82 -0.36 0.87 16 23 C 0.18 1.90 6.66 -83.94 -0.56 1.34 16 24 C -0.17 -1.32 9.87 -39.38 -0.39 -1.70 16 25 C -0.06 -0.50 10.01 -39.56 -0.40 -0.89 16 26 C -0.16 -1.54 10.03 -39.57 -0.40 -1.93 16 27 C -0.03 -0.41 9.65 -39.30 -0.38 -0.79 16 28 C -0.18 -2.65 5.89 -104.81 -0.62 -3.27 16 29 C 0.42 8.19 7.12 -32.21 -0.23 7.96 16 30 O -0.42 -10.57 14.32 -9.33 -0.13 -10.71 16 31 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 32 H 0.07 0.71 7.99 -51.93 -0.42 0.29 16 33 H 0.08 0.71 4.44 -51.93 -0.23 0.48 16 34 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 35 H 0.10 2.15 7.14 -51.93 -0.37 1.78 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 2.31 6.80 -51.93 -0.35 1.95 16 40 H 0.24 7.94 8.31 -40.82 -0.34 7.60 16 41 H 0.18 1.14 4.91 -52.49 -0.26 0.89 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.14 2.04 7.79 -52.49 -0.41 1.63 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -44.70 360.84 -10.06 -54.76 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.64 Total: -2.35 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -4.02 Total: 7.62 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.56 Total: -63.22 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.25 Total: -23.35 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.02 Total: 21.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -44.70 -10.06 -54.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085691763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.512 kcal (2) G-P(sol) polarization free energy of solvation -44.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds