Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99908 * 2 1 4 4 C 1.53004 * 109.46881 * 262.51200 * 3 2 1 5 5 H 1.08995 * 112.96313 * 311.56718 * 4 3 2 6 6 C 1.53947 * 113.76933 * 179.88639 * 4 3 2 7 7 C 1.53936 * 86.29153 * 222.09526 * 6 4 3 8 8 N 1.47586 * 113.76705 * 83.24669 * 4 3 2 9 9 C 1.36930 * 134.49331 * 318.93052 * 8 4 3 10 10 H 1.08001 * 120.00070 * 328.67219 * 9 8 4 11 11 C 1.38814 * 120.00211 * 148.67419 * 9 8 4 12 12 N 1.31621 * 120.00306 * 168.74733 * 11 9 8 13 13 Si 1.86805 * 119.99734 * 348.74214 * 11 9 8 14 14 H 1.48506 * 109.46869 * 84.66633 * 13 11 9 15 15 H 1.48493 * 109.46821 * 204.66410 * 13 11 9 16 16 H 1.48498 * 109.47190 * 324.66500 * 13 11 9 17 17 C 1.34772 * 120.00091 * 179.97438 * 2 1 3 18 18 O 1.21637 * 120.00116 * 184.51787 * 17 2 1 19 19 C 1.47138 * 120.00004 * 4.52750 * 17 2 1 20 20 C 1.37943 * 120.55179 * 326.90193 * 19 17 2 21 21 N 1.33953 * 122.20686 * 179.97438 * 20 19 17 22 22 H 0.96994 * 118.60053 * 179.97438 * 21 20 19 23 23 C 1.37807 * 122.80393 * 0.02562 * 21 20 19 24 24 C 1.39281 * 120.52681 * 179.97438 * 23 21 20 25 25 C 1.37733 * 119.97105 * 180.02562 * 24 23 21 26 26 C 1.38790 * 120.72733 * 0.02562 * 25 24 23 27 27 C 1.37716 * 120.29145 * 0.02562 * 26 25 24 28 28 C 1.39489 * 119.60479 * 359.97438 * 27 26 25 29 29 C 1.47151 * 120.55695 * 146.88828 * 19 17 2 30 30 O 1.21854 * 121.40419 * 359.74555 * 29 19 17 31 31 H 1.09000 * 109.47071 * 274.84467 * 1 2 3 32 32 H 1.08992 * 109.47312 * 34.84871 * 1 2 3 33 33 H 1.08997 * 109.46925 * 154.85038 * 1 2 3 34 34 H 1.08999 * 109.47258 * 22.51426 * 3 2 1 35 35 H 1.08999 * 109.47014 * 142.51398 * 3 2 1 36 36 H 1.09002 * 113.74030 * 336.44446 * 6 4 3 37 37 H 1.08997 * 113.73792 * 107.63551 * 6 4 3 38 38 H 1.09005 * 113.77326 * 137.91174 * 7 6 4 39 39 H 1.09003 * 113.77119 * 269.19508 * 7 6 4 40 40 H 0.96995 * 119.99911 * 179.97438 * 12 11 9 41 41 H 1.07999 * 118.89854 * 359.96914 * 20 19 17 42 42 H 1.08003 * 120.01112 * 359.97438 * 24 23 21 43 43 H 1.07999 * 119.63323 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.85147 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.19629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6153 1.6164 -1.4303 5 1 3.0873 0.7826 -1.9499 6 6 3.3935 2.9397 -1.5451 7 6 2.5444 3.2144 -2.7994 8 7 1.5571 2.2833 -2.2135 9 6 0.2051 2.1091 -2.3436 10 1 -0.2247 1.1236 -2.2413 11 6 -0.6130 3.1992 -2.6069 12 7 -1.8697 3.0111 -2.9502 13 14 0.0695 4.9330 -2.4738 14 1 0.7398 5.3001 -3.7470 15 1 -1.0405 5.8826 -2.2069 16 1 1.0516 4.9943 -1.3616 17 6 2.1389 -1.1671 0.0005 18 8 3.3524 -1.1688 0.0835 19 6 1.4067 -2.4395 -0.0995 20 6 0.1529 -2.5728 0.4600 21 7 -0.5431 -3.7150 0.3883 22 1 -1.4203 -3.7509 0.8008 23 6 -0.0657 -4.8417 -0.2455 24 6 -0.8299 -6.0052 -0.2911 25 6 -0.3413 -7.1249 -0.9272 26 6 0.9103 -7.1104 -1.5269 27 6 1.6836 -5.9713 -1.4931 28 6 1.2014 -4.8299 -0.8524 29 6 1.9995 -3.5908 -0.7983 30 8 3.1017 -3.5223 -1.3132 31 1 -0.3633 0.0868 1.0240 32 1 -0.3633 0.8433 -0.5872 33 1 -0.3633 -0.9302 -0.4367 34 1 1.5570 2.0581 0.3935 35 1 3.0854 1.1757 0.6254 36 1 3.2033 3.6331 -0.7258 37 1 4.4554 2.8077 -1.7521 38 1 2.1901 4.2426 -2.8737 39 1 2.9954 2.8522 -3.7232 40 1 -2.4414 3.7729 -3.1339 41 1 -0.2822 -1.7279 0.9732 42 1 -1.8049 -6.0297 0.1728 43 1 -0.9383 -8.0243 -0.9590 44 1 1.2797 -7.9965 -2.0215 45 1 2.6574 -5.9618 -1.9598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085691764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 64.114362 kcal Electronic energy + Delta-G solvation = -29876.558288 eV Core-core repulsion = 25862.426151 eV Total energy + Delta-G solvation = -4014.132137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26988 -39.46866 -38.13744 -37.78547 -37.25049 -34.87541 -32.43800 -32.18474 -31.19563 -30.16449 -28.81666 -27.90472 -26.37442 -24.43229 -24.04348 -23.22060 -22.66969 -22.35893 -20.08049 -19.03202 -18.66455 -18.22801 -17.70180 -17.09196 -16.13052 -15.83989 -15.74862 -15.25998 -15.20506 -15.08419 -14.75669 -14.50456 -14.17931 -14.01433 -13.58600 -13.34887 -13.31227 -13.01536 -12.95713 -12.45409 -12.38910 -12.31668 -12.22943 -11.62539 -11.48350 -11.29902 -11.22129 -11.01174 -10.85902 -10.35883 -10.26718 -9.77468 -9.71437 -9.47367 -9.45705 -9.30241 -9.11697 -8.61590 -8.12250 -7.87210 -6.89636 -6.01066 -3.40854 0.55733 0.62127 1.49625 2.54709 2.71901 3.23486 3.33119 3.43051 3.48176 3.53339 3.93767 4.09899 4.31017 4.48680 4.50938 4.55790 4.75059 4.77892 4.85823 4.98251 5.20457 5.28803 5.38319 5.43853 5.53961 5.55280 5.64706 5.65158 5.69681 5.84169 5.98022 6.04996 6.09583 6.20373 6.25704 6.28726 6.32499 6.45274 6.47786 6.54110 6.59654 6.66283 6.74554 6.97654 7.19849 7.48772 7.90207 7.95249 8.29342 8.64166 8.71862 9.59887 10.40616 11.14887 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.003203 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.706400 B = 8739.750959 C = 9511.733389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.598 5.598 3 C 0.125 3.875 4 C 0.132 3.868 5 H 0.058 0.942 6 C -0.148 4.148 7 C 0.098 3.902 8 N -0.619 5.619 9 C -0.231 4.231 10 H 0.090 0.910 11 C 0.028 3.972 12 N -0.914 5.914 13 Si 0.895 3.105 14 H -0.287 1.287 15 H -0.304 1.304 16 H -0.270 1.270 17 C 0.576 3.424 18 O -0.531 6.531 19 C -0.319 4.319 20 C 0.192 3.808 21 N -0.600 5.600 22 H 0.421 0.579 23 C 0.184 3.816 24 C -0.170 4.170 25 C -0.062 4.062 26 C -0.157 4.157 27 C -0.031 4.031 28 C -0.183 4.183 29 C 0.434 3.566 30 O -0.458 6.458 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.264 0.736 41 H 0.185 0.815 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -17.084 9.636 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.330 5.330 3 C 0.001 3.999 4 C 0.025 3.975 5 H 0.076 0.924 6 C -0.187 4.187 7 C -0.027 4.027 8 N -0.347 5.347 9 C -0.358 4.358 10 H 0.107 0.893 11 C -0.171 4.171 12 N -0.558 5.558 13 Si 0.727 3.273 14 H -0.215 1.215 15 H -0.232 1.232 16 H -0.195 1.195 17 C 0.364 3.636 18 O -0.407 6.407 19 C -0.331 4.331 20 C 0.060 3.940 21 N -0.207 5.207 22 H 0.258 0.742 23 C 0.083 3.917 24 C -0.191 4.191 25 C -0.081 4.081 26 C -0.176 4.176 27 C -0.049 4.049 28 C -0.187 4.187 29 C 0.316 3.684 30 O -0.335 6.335 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.201 0.799 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.571 -16.993 9.315 19.387 hybrid contribution -0.512 1.002 -0.050 1.127 sum -1.083 -15.990 9.264 18.512 Atomic orbital electron populations 1.22793 0.80129 1.06274 1.01088 1.47579 1.06915 1.05629 1.72836 1.21762 0.96386 0.83945 0.97779 1.22733 0.88849 0.94411 0.91471 0.92405 1.23574 0.97718 0.98192 0.99180 1.22845 0.89946 0.95101 0.94770 1.46294 1.01879 1.39262 1.47314 1.18592 0.78316 0.94203 1.44647 0.89315 1.25195 0.94746 0.98006 0.99154 1.69751 1.05986 1.30832 1.49193 0.86638 0.77065 0.85067 0.78566 1.21472 1.23219 1.19500 1.17391 0.86842 0.82381 0.76948 1.90774 1.13280 1.86946 1.49743 1.21908 0.97082 0.98603 1.15500 1.22845 0.90998 0.87897 0.92249 1.40883 1.20155 1.09088 1.50622 0.74234 1.17935 0.93186 0.86887 0.93733 1.20702 1.00675 0.92012 1.05710 1.21093 0.95331 0.97445 0.94194 1.21144 0.95136 0.98690 1.02625 1.21170 0.99606 0.90604 0.93561 1.20301 0.94985 0.97841 1.05544 1.19333 0.85849 0.85091 0.78143 1.90723 1.19210 1.83811 1.39789 0.93349 0.85937 0.91370 0.89699 0.90647 0.90321 0.92097 0.93872 0.94029 0.92652 0.79862 0.84846 0.85057 0.85107 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 8.40 59.85 0.50 1.10 16 2 N -0.60 -10.71 2.89 -182.96 -0.53 -11.24 16 3 C 0.12 2.32 5.26 -4.04 -0.02 2.30 16 4 C 0.13 2.77 4.47 -66.86 -0.30 2.47 16 5 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 6 C -0.15 -2.76 7.86 -25.80 -0.20 -2.97 16 7 C 0.10 2.13 7.64 -2.85 -0.02 2.11 16 8 N -0.62 -14.83 3.13 -169.72 -0.53 -15.37 16 9 C -0.23 -6.14 9.27 -15.06 -0.14 -6.28 16 10 H 0.09 2.46 6.15 -52.49 -0.32 2.14 16 11 C 0.03 0.79 5.50 -17.43 -0.10 0.69 16 12 N -0.91 -26.66 13.97 55.49 0.78 -25.89 16 13 Si 0.90 22.19 24.82 -169.99 -4.22 17.97 16 14 H -0.29 -7.16 6.94 56.52 0.39 -6.77 16 15 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 16 H -0.27 -6.44 6.96 56.52 0.39 -6.04 16 17 C 0.58 11.17 7.28 -12.65 -0.09 11.08 16 18 O -0.53 -12.24 15.86 -9.59 -0.15 -12.39 16 19 C -0.32 -5.21 5.61 -102.78 -0.58 -5.79 16 20 C 0.19 2.08 8.54 -16.73 -0.14 1.93 16 21 N -0.60 -4.85 5.21 -10.42 -0.05 -4.91 16 22 H 0.42 1.60 8.73 -40.82 -0.36 1.25 16 23 C 0.18 1.85 6.66 -83.94 -0.56 1.29 16 24 C -0.17 -1.24 9.87 -39.38 -0.39 -1.62 16 25 C -0.06 -0.43 10.01 -39.56 -0.40 -0.83 16 26 C -0.16 -1.32 10.03 -39.57 -0.40 -1.72 16 27 C -0.03 -0.36 9.65 -39.31 -0.38 -0.74 16 28 C -0.18 -2.46 5.89 -104.81 -0.62 -3.08 16 29 C 0.43 7.70 7.12 -32.20 -0.23 7.47 16 30 O -0.46 -9.90 16.33 -9.79 -0.16 -10.06 16 31 H 0.05 0.56 7.47 -51.93 -0.39 0.17 16 32 H 0.12 2.37 4.49 -51.93 -0.23 2.14 16 33 H 0.07 0.93 4.75 -51.93 -0.25 0.68 16 34 H 0.08 1.56 8.02 -51.93 -0.42 1.14 16 35 H 0.08 1.34 7.59 -51.93 -0.39 0.95 16 36 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.98 3.96 -51.93 -0.21 0.77 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.18 1.52 4.84 -52.49 -0.25 1.26 16 42 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.14 1.64 7.78 -52.49 -0.41 1.23 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -37.90 361.08 -8.82 -46.72 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.34 Total: 2.28 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -4.06 Total: 7.43 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.34 Total: -57.40 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.31 Total: -22.44 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.22 Total: 17.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.90 -8.82 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085691764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.835 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds