Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99966 * 2 1 4 4 C 1.52995 * 109.46819 * 275.69384 * 3 2 1 5 5 H 1.09002 * 113.04499 * 65.73227 * 4 3 2 6 6 C 1.53947 * 113.77086 * 293.97946 * 4 3 2 7 7 C 1.53946 * 86.28876 * 222.09259 * 6 4 3 8 8 N 1.47580 * 86.24317 * 23.54848 * 7 6 4 9 9 C 1.36935 * 134.49488 * 155.42134 * 8 7 6 10 10 H 1.07998 * 120.00517 * 185.21625 * 9 8 7 11 11 C 1.38812 * 119.99937 * 5.22624 * 9 8 7 12 12 N 1.31622 * 119.99871 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00085 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46873 * 89.99686 * 13 11 9 15 15 H 1.48500 * 109.46815 * 209.99598 * 13 11 9 16 16 H 1.48497 * 109.46962 * 329.99434 * 13 11 9 17 17 C 1.34769 * 119.99844 * 179.97438 * 2 1 3 18 18 O 1.21583 * 120.00028 * 175.86280 * 17 2 1 19 19 C 1.47527 * 120.00305 * 355.86579 * 17 2 1 20 20 C 1.36621 * 126.83107 * 186.08694 * 19 17 2 21 21 C 1.42195 * 103.79089 * 179.90763 * 20 19 17 22 22 C 1.48458 * 126.84363 * 180.14872 * 21 20 19 23 23 C 1.39315 * 120.11254 * 0.02562 * 22 21 20 24 24 C 1.38029 * 119.87540 * 179.74903 * 23 22 21 25 25 C 1.38325 * 120.11551 * 0.52471 * 24 23 22 26 26 C 1.38322 * 120.24052 * 359.73104 * 25 24 23 27 27 C 1.38023 * 120.11666 * 0.02562 * 26 25 24 28 28 N 1.30931 * 106.31497 * 0.35617 * 21 20 19 29 29 O 1.20865 * 111.80515 * 359.76812 * 28 21 20 30 30 H 1.09009 * 109.46953 * 95.63979 * 1 2 3 31 31 H 1.08997 * 109.47644 * 215.64492 * 1 2 3 32 32 H 1.09002 * 109.47128 * 335.64574 * 1 2 3 33 33 H 1.09001 * 109.46981 * 155.69424 * 3 2 1 34 34 H 1.09001 * 109.47293 * 35.69300 * 3 2 1 35 35 H 1.08997 * 113.74538 * 107.75086 * 6 4 3 36 36 H 1.08996 * 113.83710 * 336.44917 * 6 4 3 37 37 H 1.08995 * 113.77292 * 137.90730 * 7 6 4 38 38 H 1.09004 * 113.76893 * 269.19026 * 7 6 4 39 39 H 0.97003 * 119.99699 * 180.02562 * 12 11 9 40 40 H 1.07994 * 128.10809 * 0.02562 * 20 19 17 41 41 H 1.07997 * 120.06463 * 359.97438 * 23 22 21 42 42 H 1.07993 * 119.93958 * 180.25603 * 24 23 22 43 43 H 1.08001 * 119.87396 * 179.74784 * 25 24 23 44 44 H 1.07999 * 119.93772 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.05186 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3285 1.7819 -1.4354 5 1 1.3709 2.0502 -1.8817 6 6 3.2047 0.8915 -2.3351 7 6 3.8000 2.2018 -2.8815 8 7 3.3732 2.8133 -1.6080 9 6 3.7819 3.8986 -0.8800 10 1 3.3476 4.0933 0.0895 11 6 4.7544 4.7489 -1.3881 12 7 5.2840 4.5115 -2.5695 13 14 5.3116 6.2299 -0.3953 14 1 6.4546 5.8439 0.4704 15 1 5.7336 7.3141 -1.3182 16 1 4.1893 6.7091 0.4509 17 6 2.1388 -1.1672 0.0005 18 8 3.3523 -1.1686 -0.0754 19 6 1.4041 -2.4431 0.0932 20 6 1.9439 -3.6916 0.2213 21 6 0.8099 -4.5482 0.2667 22 6 0.8158 -6.0264 0.4036 23 6 2.0231 -6.7143 0.5039 24 6 2.0228 -8.0882 0.6362 25 6 0.8269 -8.7830 0.6585 26 6 -0.3745 -8.1054 0.5540 27 6 -0.3857 -6.7311 0.4263 28 7 -0.2405 -3.7739 0.1592 29 8 0.0683 -2.6094 0.0625 30 1 -0.3633 -0.1010 -1.0228 31 1 -0.3634 -0.8351 0.5988 32 1 -0.3633 0.9362 0.4238 33 1 3.1903 1.1151 0.4230 34 1 1.6564 2.0008 0.5996 35 1 2.6398 0.3243 -3.0748 36 1 3.9205 0.2796 -1.7863 37 1 4.8815 2.1716 -3.0136 38 1 3.2759 2.5924 -3.7538 39 1 5.9639 5.1055 -2.9244 40 1 2.9875 -3.9639 0.2772 41 1 2.9575 -6.1732 0.4817 42 1 2.9579 -8.6220 0.7181 43 1 0.8313 -9.8584 0.7581 44 1 -1.3054 -8.6527 0.5724 45 1 -1.3243 -6.2032 0.3444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085691781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = 124.352014 kcal Electronic energy + Delta-G solvation = -28551.621872 eV Core-core repulsion = 24540.101835 eV Total energy + Delta-G solvation = -4011.520036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.21364 -39.87988 -39.49274 -37.68532 -35.61048 -34.67052 -32.48589 -32.05652 -31.33369 -30.73076 -28.62874 -27.78699 -26.74041 -24.50402 -24.33105 -23.26704 -22.96675 -22.24021 -21.60633 -19.93526 -18.97214 -18.09124 -17.93670 -16.97319 -16.74425 -16.46802 -16.21523 -15.59318 -15.45777 -15.01141 -14.71507 -14.21789 -14.02930 -13.97290 -13.76483 -13.57830 -13.50751 -13.41614 -13.09059 -12.55841 -12.31519 -12.05820 -11.92786 -11.74671 -11.38987 -11.37398 -11.16985 -11.02939 -10.89088 -10.69105 -10.45246 -10.18612 -9.96490 -9.83686 -9.67400 -9.48902 -9.38226 -8.92948 -8.76594 -8.47060 -6.82708 -5.72511 -3.04518 0.40216 0.74252 0.97401 2.07408 2.41901 2.96663 3.04047 3.41657 3.45824 3.46238 3.48069 3.55784 4.02489 4.47955 4.52574 4.53757 4.64455 4.66619 4.77580 4.93126 5.02809 5.08880 5.19265 5.27107 5.40873 5.41286 5.49242 5.55638 5.59826 5.60429 5.74312 5.86511 5.92442 6.01650 6.06808 6.07470 6.08444 6.35968 6.48263 6.49609 6.62792 6.76042 6.82130 7.25776 7.31718 7.53932 7.64810 7.75490 8.01257 8.04086 9.08452 9.75115 10.65993 11.45001 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.028055 B = 0.002044 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.816593 B =13696.563577 C =14049.318708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.592 5.592 3 C 0.115 3.885 4 C 0.127 3.873 5 H 0.044 0.956 6 C -0.161 4.161 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.596 3.404 18 O -0.499 6.499 19 C -0.066 4.066 20 C -0.147 4.147 21 C 0.052 3.948 22 C -0.021 4.021 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.121 4.121 27 C -0.091 4.091 28 N -0.345 5.345 29 O 0.124 5.876 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.185 0.815 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 -24.692 6.604 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.062 0.938 6 C -0.199 4.199 7 C 0.039 3.961 8 N -0.327 5.327 9 C -0.351 4.351 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.380 3.620 18 O -0.374 6.374 19 C -0.131 4.131 20 C -0.170 4.170 21 C -0.103 4.103 22 C -0.022 4.022 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.139 4.139 27 C -0.111 4.111 28 N -0.045 5.045 29 O 0.050 5.950 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.202 0.798 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.723 -24.544 6.588 28.420 hybrid contribution 0.862 0.949 0.392 1.340 sum -11.862 -23.595 6.980 27.316 Atomic orbital electron populations 1.22076 0.78939 1.03568 1.02747 1.47731 1.07429 1.06085 1.71161 1.22012 0.97753 0.81543 0.99409 1.22564 0.93305 0.89650 0.92577 0.93840 1.23849 0.99549 0.97689 0.98806 1.22107 0.99447 0.86211 0.88288 1.46010 1.34760 1.29618 1.22265 1.18972 1.17447 1.00309 0.98345 0.90358 1.24805 0.99855 0.98964 0.96801 1.69843 1.30357 1.38938 1.17443 0.86160 0.78569 0.82425 0.78832 1.21551 1.21711 1.20727 1.16597 0.86175 0.80848 0.78387 1.90905 1.11770 1.85293 1.49391 1.24338 0.83487 0.97637 1.07664 1.22857 1.01462 0.89754 1.02886 1.21932 0.88805 0.95239 1.04371 1.17681 0.94372 0.87123 1.03039 1.21193 0.97053 0.94552 0.98448 1.21115 0.98553 0.93782 1.00219 1.21316 0.92505 1.00218 0.98800 1.21125 0.98463 0.93933 1.00353 1.21233 0.97455 0.94321 0.98056 1.73947 1.23768 0.89894 1.16871 1.85129 1.22624 1.20904 1.66331 0.91762 0.90560 0.89961 0.88546 0.90669 0.93899 0.89471 0.91551 0.95641 0.93684 0.79777 0.85177 0.85276 0.85658 0.85483 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.76 59.85 0.58 1.31 16 2 N -0.59 -8.39 2.80 -182.81 -0.51 -8.91 16 3 C 0.12 1.99 5.42 -4.04 -0.02 1.97 16 4 C 0.13 2.57 4.58 -66.74 -0.31 2.26 16 5 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.16 -3.29 7.24 -25.79 -0.19 -3.47 16 7 C 0.16 4.05 7.38 -2.97 -0.02 4.03 16 8 N -0.60 -15.40 3.58 -169.72 -0.61 -16.01 16 9 C -0.22 -6.20 10.52 -15.06 -0.16 -6.36 16 10 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.69 11.52 55.49 0.64 -27.05 16 13 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.60 8.98 7.32 -12.48 -0.09 8.88 16 18 O -0.50 -9.11 14.67 5.29 0.08 -9.03 16 19 C -0.07 -0.84 6.89 -36.38 -0.25 -1.09 16 20 C -0.15 -1.69 10.31 -38.65 -0.40 -2.09 16 21 C 0.05 0.59 7.05 -82.52 -0.58 0.01 16 22 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 23 C -0.09 -0.76 9.60 -39.26 -0.38 -1.14 16 24 C -0.12 -0.80 10.04 -39.63 -0.40 -1.20 16 25 C -0.11 -0.70 10.04 -39.52 -0.40 -1.09 16 26 C -0.12 -0.85 10.03 -39.63 -0.40 -1.25 16 27 C -0.09 -0.81 9.70 -39.26 -0.38 -1.20 16 28 N -0.34 -4.20 11.78 33.39 0.39 -3.81 16 29 O 0.12 1.47 7.94 15.53 0.12 1.59 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.08 0.72 5.35 -51.93 -0.28 0.44 16 32 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 33 H 0.10 1.92 7.31 -51.93 -0.38 1.54 16 34 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.88 6.46 -51.93 -0.34 1.55 16 37 H 0.07 1.80 7.40 -51.93 -0.38 1.41 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.18 1.78 7.57 -52.49 -0.40 1.38 16 41 H 0.13 0.88 7.22 -52.49 -0.38 0.50 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 1.12 7.89 -52.49 -0.41 0.70 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -33.33 378.35 -9.20 -42.53 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.90 Total: -0.69 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.09 Total: -1.54 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.09 Total: -55.78 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.20 Total: -7.43 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.33 -9.20 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085691781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.877 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds