Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99980 * 2 1 4 4 C 1.52994 * 109.47319 * 264.67384 * 3 2 1 5 5 H 1.09006 * 112.95992 * 293.76349 * 4 3 2 6 6 C 1.53944 * 113.77243 * 65.44213 * 4 3 2 7 7 C 1.53947 * 86.29058 * 137.90996 * 6 4 3 8 8 N 1.47579 * 113.77107 * 162.08851 * 4 3 2 9 9 C 1.36937 * 134.49230 * 41.06170 * 8 4 3 10 10 H 1.08001 * 120.00343 * 342.07124 * 9 8 4 11 11 C 1.38812 * 119.99707 * 162.07450 * 9 8 4 12 12 N 1.31623 * 119.99775 * 167.35018 * 11 9 8 13 13 Si 1.86798 * 120.00275 * 347.35182 * 11 9 8 14 14 H 1.48498 * 109.47286 * 84.87516 * 13 11 9 15 15 H 1.48500 * 109.47193 * 204.87871 * 13 11 9 16 16 H 1.48504 * 109.46791 * 324.87826 * 13 11 9 17 17 C 1.34781 * 120.00128 * 180.02562 * 2 1 3 18 18 O 1.21582 * 119.99727 * 183.43474 * 17 2 1 19 19 C 1.47531 * 120.00037 * 3.43713 * 17 2 1 20 20 C 1.36617 * 126.82979 * 173.03348 * 19 17 2 21 21 C 1.42193 * 103.79166 * 180.02562 * 20 19 17 22 22 C 1.48453 * 126.83997 * 180.02562 * 21 20 19 23 23 C 1.39317 * 120.11528 * 180.02562 * 22 21 20 24 24 C 1.38024 * 119.87889 * 179.97438 * 23 22 21 25 25 C 1.38320 * 120.11745 * 359.97438 * 24 23 22 26 26 C 1.38314 * 120.23948 * 0.26867 * 25 24 23 27 27 C 1.38027 * 120.12076 * 359.49738 * 26 25 24 28 28 N 1.30925 * 106.31308 * 0.26300 * 21 20 19 29 29 O 1.20876 * 111.80829 * 359.53095 * 28 21 20 30 30 H 1.09003 * 109.47133 * 264.32164 * 1 2 3 31 31 H 1.08999 * 109.47269 * 24.32201 * 1 2 3 32 32 H 1.08998 * 109.46875 * 144.32664 * 1 2 3 33 33 H 1.09009 * 109.46565 * 24.67551 * 3 2 1 34 34 H 1.09004 * 109.47067 * 144.66871 * 3 2 1 35 35 H 1.09005 * 113.73969 * 252.25748 * 6 4 3 36 36 H 1.08997 * 113.73986 * 23.45053 * 6 4 3 37 37 H 1.08994 * 113.76575 * 90.69280 * 7 6 4 38 38 H 1.08993 * 113.76522 * 221.98210 * 7 6 4 39 39 H 0.97005 * 119.99767 * 180.02562 * 12 11 9 40 40 H 1.08001 * 128.10237 * 0.02585 * 20 19 17 41 41 H 1.08004 * 120.06155 * 359.96152 * 23 22 21 42 42 H 1.08001 * 119.93669 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.87548 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.93985 * 179.74450 * 26 25 24 45 45 H 1.07999 * 120.06147 * 180.25246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5685 1.6435 -1.4362 5 1 3.2839 0.9538 -1.8843 6 6 1.3537 1.9463 -2.3320 7 6 2.1780 3.1253 -2.8801 8 7 2.9259 3.0652 -1.6066 9 6 3.6560 3.9653 -0.8772 10 1 3.8701 3.7701 0.1632 11 6 4.1208 5.1286 -1.4751 12 7 4.6005 6.1038 -0.7325 13 14 4.0653 5.3103 -3.3334 14 1 2.7250 5.8014 -3.7430 15 1 5.1020 6.2811 -3.7670 16 1 4.3247 3.9927 -3.9674 17 6 2.1389 -1.1672 -0.0005 18 8 3.3531 -1.1681 0.0626 19 6 1.4033 -2.4437 -0.0777 20 6 1.9410 -3.6914 -0.2206 21 6 0.8071 -4.5492 -0.2387 22 6 0.8114 -6.0276 -0.3738 23 6 -0.3900 -6.7329 -0.3750 24 6 -0.3804 -8.1073 -0.5014 25 6 0.8192 -8.7843 -0.6273 26 6 2.0151 -8.0894 -0.6217 27 6 2.0168 -6.7144 -0.5007 28 7 -0.2417 -3.7749 -0.1177 29 8 0.0684 -2.6105 -0.0218 30 1 -0.3633 -0.1017 1.0226 31 1 -0.3634 0.9364 -0.4233 32 1 -0.3633 -0.8348 -0.5993 33 1 1.5703 2.0503 0.4291 34 1 3.1053 1.1642 0.5943 35 1 1.1500 1.1719 -3.0716 36 1 0.4650 2.2495 -1.7785 37 1 2.7795 2.8725 -3.7531 38 1 1.6014 4.0409 -3.0115 39 1 4.9250 6.9169 -1.1503 40 1 2.9833 -3.9627 -0.3010 41 1 -1.3273 -6.2052 -0.2770 42 1 -1.3112 -8.6549 -0.5029 43 1 0.8223 -9.8598 -0.7256 44 1 2.9492 -8.6233 -0.7162 45 1 2.9509 -6.1725 -0.5006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085691782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 128.728639 kcal Electronic energy + Delta-G solvation = -28524.361157 eV Core-core repulsion = 24513.030905 eV Total energy + Delta-G solvation = -4011.330252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.25722 -39.96452 -39.52168 -38.19155 -35.67053 -34.71512 -32.52789 -32.19098 -31.36566 -30.77117 -28.97893 -28.37484 -26.76641 -24.57215 -24.53042 -23.35427 -22.99365 -22.28305 -21.82171 -20.07112 -19.28705 -18.11063 -18.00656 -17.00637 -16.87751 -16.53255 -16.26222 -15.65794 -15.58538 -15.24279 -15.01042 -14.42287 -14.11551 -14.02885 -13.81287 -13.68367 -13.45249 -13.26207 -13.16255 -12.96530 -12.52681 -12.27311 -12.08643 -11.86094 -11.79426 -11.61339 -11.41216 -11.24805 -11.10326 -10.73389 -10.35101 -10.23862 -10.11592 -10.02425 -9.95729 -9.43078 -9.40890 -8.96156 -8.93621 -8.55326 -7.11766 -5.90557 -3.26267 0.36783 0.69289 0.94748 2.03689 2.36778 2.85115 3.00742 3.34563 3.43431 3.45575 3.46149 3.51994 3.97536 4.47056 4.51053 4.54720 4.60189 4.63533 4.68475 4.73905 4.89572 5.00476 5.10481 5.17155 5.19590 5.28048 5.37935 5.39514 5.55410 5.57571 5.61439 5.68900 5.75997 5.87701 5.98915 6.04226 6.05087 6.05985 6.19372 6.28370 6.34788 6.45592 6.46896 6.48778 6.97889 7.20098 7.24721 7.69908 7.93861 8.35912 8.69590 9.64790 10.30347 11.26226 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.002078 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.515336 B =13474.259934 C =13654.894010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.118 3.882 4 C 0.130 3.870 5 H 0.054 0.946 6 C -0.145 4.145 7 C 0.097 3.903 8 N -0.615 5.615 9 C -0.229 4.229 10 H 0.098 0.902 11 C 0.017 3.983 12 N -0.919 5.919 13 Si 0.885 3.115 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.272 1.272 17 C 0.596 3.404 18 O -0.506 6.506 19 C -0.067 4.067 20 C -0.147 4.147 21 C 0.052 3.948 22 C -0.022 4.022 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.093 4.093 28 N -0.344 5.344 29 O 0.125 5.875 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.263 0.737 40 H 0.185 0.815 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -27.860 0.416 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.322 5.322 3 C -0.004 4.004 4 C 0.022 3.978 5 H 0.071 0.929 6 C -0.183 4.183 7 C -0.028 4.028 8 N -0.343 5.343 9 C -0.355 4.355 10 H 0.116 0.884 11 C -0.180 4.180 12 N -0.564 5.564 13 Si 0.716 3.284 14 H -0.213 1.213 15 H -0.227 1.227 16 H -0.197 1.197 17 C 0.380 3.620 18 O -0.381 6.381 19 C -0.132 4.132 20 C -0.169 4.169 21 C -0.103 4.103 22 C -0.023 4.023 23 C -0.110 4.110 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.137 4.137 27 C -0.113 4.113 28 N -0.044 5.044 29 O 0.051 5.949 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.202 0.798 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.656 -27.687 0.633 30.449 hybrid contribution 0.920 0.199 -1.187 1.515 sum -11.736 -27.488 -0.554 29.893 Atomic orbital electron populations 1.22136 0.78675 1.04091 1.02543 1.47757 1.07592 1.05932 1.70960 1.21871 0.97486 0.82048 0.99021 1.22521 0.93842 0.88428 0.92996 0.92869 1.23611 0.97624 0.98110 0.98969 1.22801 0.92437 0.97033 0.90518 1.46570 1.60455 1.04994 1.22246 1.18735 1.26622 0.97004 0.93146 0.88401 1.24951 0.98699 0.96783 0.97611 1.69739 1.46083 1.06134 1.34472 0.86792 0.76947 0.77320 0.87369 1.21257 1.22692 1.19710 1.16655 0.86126 0.80941 0.78307 1.90908 1.11795 1.85539 1.49859 1.24292 0.83599 0.97558 1.07795 1.22861 1.01478 0.89761 1.02815 1.21928 0.88789 0.95233 1.04347 1.17680 0.94402 0.87106 1.03085 1.21238 0.97437 0.94321 0.98046 1.21129 0.98489 0.93937 1.00300 1.21317 0.92508 1.00245 0.98736 1.21113 0.98555 0.93763 1.00239 1.21188 0.97054 0.94552 0.98464 1.73951 1.23703 0.89858 1.16841 1.85134 1.22581 1.20965 1.66221 0.91844 0.89506 0.90482 0.88843 0.89630 0.92524 0.90112 0.93867 0.92439 0.92748 0.79795 0.85288 0.85459 0.85641 0.85273 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 9.40 59.85 0.56 1.24 16 2 N -0.59 -8.00 2.78 -182.81 -0.51 -8.51 16 3 C 0.12 1.96 5.26 -4.04 -0.02 1.94 16 4 C 0.13 2.47 4.54 -66.87 -0.30 2.16 16 5 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.14 -2.36 7.30 -25.79 -0.19 -2.55 16 7 C 0.10 2.01 5.80 -2.85 -0.02 1.99 16 8 N -0.61 -14.55 3.33 -169.73 -0.57 -15.11 16 9 C -0.23 -6.40 10.94 -15.06 -0.16 -6.57 16 10 H 0.10 2.89 8.06 -52.49 -0.42 2.46 16 11 C 0.02 0.51 5.50 -17.43 -0.10 0.41 16 12 N -0.92 -28.48 13.97 55.49 0.78 -27.71 16 13 Si 0.89 22.70 25.14 -169.99 -4.27 18.43 16 14 H -0.29 -7.09 6.88 56.52 0.39 -6.70 16 15 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 16 H -0.27 -6.81 6.02 56.52 0.34 -6.47 16 17 C 0.60 8.67 7.63 -12.47 -0.10 8.58 16 18 O -0.51 -9.05 16.56 5.29 0.09 -8.97 16 19 C -0.07 -0.82 6.88 -36.38 -0.25 -1.07 16 20 C -0.15 -1.63 10.31 -38.65 -0.40 -2.03 16 21 C 0.05 0.58 7.05 -82.53 -0.58 0.00 16 22 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 23 C -0.09 -0.79 9.70 -39.26 -0.38 -1.17 16 24 C -0.12 -0.82 10.03 -39.63 -0.40 -1.22 16 25 C -0.11 -0.67 10.04 -39.52 -0.40 -1.07 16 26 C -0.12 -0.77 10.03 -39.63 -0.40 -1.17 16 27 C -0.09 -0.74 9.60 -39.26 -0.38 -1.11 16 28 N -0.34 -4.06 11.78 33.39 0.39 -3.67 16 29 O 0.12 1.43 7.97 15.55 0.12 1.55 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.79 6.63 -51.93 -0.34 0.45 16 32 H 0.08 0.71 5.42 -51.93 -0.28 0.43 16 33 H 0.09 1.51 8.03 -51.92 -0.42 1.10 16 34 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.17 6.92 -51.93 -0.36 0.81 16 37 H 0.04 0.92 6.60 -51.93 -0.34 0.57 16 38 H 0.06 1.21 7.08 -51.93 -0.37 0.85 16 39 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 40 H 0.18 1.71 7.57 -52.49 -0.40 1.31 16 41 H 0.13 1.09 7.89 -52.48 -0.41 0.67 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.84 7.22 -52.49 -0.38 0.46 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -33.78 373.31 -8.32 -42.10 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.86 Total: -1.29 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.12 Total: -2.46 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.09 Total: -54.99 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.21 Total: -7.41 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.27 Total: 18.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.78 -8.32 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085691782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.832 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds