Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99742 * 2 1 4 4 C 1.52997 * 109.46920 * 277.64811 * 3 2 1 5 5 H 1.09000 * 112.96530 * 49.01425 * 4 3 2 6 6 C 1.53953 * 113.76639 * 180.68647 * 4 3 2 7 7 C 1.53945 * 86.28983 * 137.91011 * 6 4 3 8 8 N 1.47574 * 113.77295 * 277.17902 * 4 3 2 9 9 C 1.36937 * 134.49023 * 41.06350 * 8 4 3 10 10 H 1.07996 * 120.00343 * 11.18314 * 9 8 4 11 11 C 1.38819 * 120.00093 * 191.18909 * 9 8 4 12 12 N 1.31620 * 119.99444 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00266 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47179 * 59.99251 * 13 11 9 15 15 H 1.48504 * 109.47484 * 179.97438 * 13 11 9 16 16 H 1.48511 * 109.47060 * 299.99523 * 13 11 9 17 17 C 1.34776 * 119.99986 * 180.02562 * 2 1 3 18 18 O 1.21489 * 119.99915 * 183.97557 * 17 2 1 19 19 C 1.48285 * 119.99904 * 3.97605 * 17 2 1 20 20 C 1.35686 * 118.86793 * 150.41324 * 19 17 2 21 21 C 1.42053 * 119.93062 * 179.73364 * 20 19 17 22 22 O 1.21931 * 121.06407 * 180.02562 * 21 20 19 23 23 C 1.47220 * 117.86737 * 0.52515 * 21 20 19 24 24 C 1.39583 * 121.36271 * 179.78514 * 23 21 20 25 25 C 1.36642 * 119.69572 * 179.77982 * 24 23 21 26 26 C 1.38885 * 120.55651 * 359.91130 * 25 24 23 27 27 C 1.37713 * 120.71977 * 0.06778 * 26 25 24 28 28 C 1.39291 * 119.71909 * 359.97438 * 27 26 25 29 29 N 1.36467 * 118.87364 * 330.43522 * 19 17 2 30 30 H 0.96998 * 119.17817 * 359.97438 * 29 19 17 31 31 H 1.09003 * 109.47245 * 274.14512 * 1 2 3 32 32 H 1.09000 * 109.47388 * 34.14755 * 1 2 3 33 33 H 1.08999 * 109.47474 * 154.14676 * 1 2 3 34 34 H 1.08997 * 109.46985 * 37.65508 * 3 2 1 35 35 H 1.08996 * 109.46750 * 157.64804 * 3 2 1 36 36 H 1.09000 * 113.74276 * 252.26041 * 6 4 3 37 37 H 1.09003 * 113.73819 * 23.45282 * 6 4 3 38 38 H 1.08997 * 113.76534 * 90.69432 * 7 6 4 39 39 H 1.08995 * 113.76821 * 221.97924 * 7 6 4 40 40 H 0.97011 * 119.99516 * 180.02562 * 12 11 9 41 41 H 1.07995 * 120.02992 * 359.97438 * 20 19 17 42 42 H 1.08002 * 120.15371 * 359.70871 * 24 23 21 43 43 H 1.08001 * 119.72023 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.63987 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.14003 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2861 1.8064 -1.4297 5 1 1.3249 1.8084 -1.9437 6 6 3.0548 3.1352 -1.5463 7 6 3.7041 2.5336 -2.8058 8 7 3.3847 1.2174 -2.2196 9 6 3.9005 -0.0439 -2.3546 10 1 3.3707 -0.8908 -1.9443 11 6 5.1046 -0.2339 -3.0187 12 7 5.7502 0.7982 -3.5191 13 14 5.8080 -1.9545 -3.2034 14 1 4.8473 -2.8043 -3.9519 15 1 7.0920 -1.8873 -3.9465 16 1 6.0435 -2.5400 -1.8591 17 6 2.1389 -1.1672 -0.0005 18 8 3.3515 -1.1685 0.0724 19 6 1.4001 -2.4498 -0.0901 20 6 2.0027 -3.5131 -0.6794 21 6 1.3179 -4.7542 -0.7724 22 8 1.8399 -5.7231 -1.2972 23 6 -0.0466 -4.8299 -0.2248 24 6 -0.7875 -6.0115 -0.2812 25 6 -2.0494 -6.0449 0.2417 26 6 -2.6000 -4.9137 0.8302 27 6 -1.8867 -3.7376 0.8971 28 6 -0.5988 -3.6801 0.3698 29 7 0.1373 -2.5201 0.4224 30 1 -0.2505 -1.7321 0.8342 31 1 -0.3634 0.0743 1.0250 32 1 -0.3634 0.8505 -0.5768 33 1 -0.3634 -0.9248 -0.4481 34 1 1.6745 1.9902 0.6278 35 1 3.2022 1.1082 0.3908 36 1 2.4165 3.9951 -1.7495 37 1 3.7556 3.3099 -0.7298 38 1 3.1603 2.7485 -3.7256 39 1 4.7727 2.7328 -2.8870 40 1 6.5914 0.6653 -3.9835 41 1 3.0035 -3.4170 -1.0738 42 1 -0.3657 -6.8951 -0.7371 43 1 -2.6232 -6.9588 0.1979 44 1 -3.5986 -4.9568 1.2393 45 1 -2.3241 -2.8635 1.3565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085705324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = 75.370539 kcal Electronic energy + Delta-G solvation = -30320.985309 eV Core-core repulsion = 26307.341277 eV Total energy + Delta-G solvation = -4013.644033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56572 -39.75131 -38.08640 -37.88963 -37.03770 -35.39686 -32.22713 -32.05822 -31.06615 -30.21277 -28.58632 -27.77659 -26.92390 -24.81400 -23.81031 -23.25121 -22.49264 -22.27526 -20.14928 -19.07156 -18.65259 -18.38682 -17.62693 -16.88400 -16.56137 -16.05873 -15.77222 -15.26662 -14.95866 -14.87664 -14.69900 -14.27465 -14.14853 -13.90517 -13.64923 -13.49804 -13.41866 -13.23307 -12.99625 -12.85404 -12.44007 -12.11430 -11.93922 -11.58564 -11.49105 -11.41165 -11.09030 -10.85074 -10.58711 -10.48689 -10.07206 -9.89934 -9.66911 -9.56414 -9.47488 -9.31762 -9.23223 -8.61965 -8.41072 -7.87297 -6.71949 -5.61060 -2.93581 0.43217 0.75115 1.39599 2.50287 2.75876 2.91443 3.27444 3.57206 3.58294 3.65592 3.87276 4.08819 4.30978 4.42873 4.58693 4.60752 4.71434 4.90759 4.91875 4.97785 5.02808 5.13106 5.36852 5.38183 5.48467 5.59648 5.62050 5.66510 5.68036 5.75173 5.83904 5.92386 6.02841 6.13223 6.25887 6.33827 6.35877 6.46526 6.55848 6.66232 6.66685 6.77719 6.82451 7.30160 7.35619 7.54688 7.73254 7.85614 8.15231 8.26303 9.20126 9.87882 10.71492 11.54018 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.004136 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.334699 B = 6768.345680 C = 8485.105757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.605 5.605 3 C 0.115 3.885 4 C 0.122 3.878 5 H 0.042 0.958 6 C -0.155 4.155 7 C 0.146 3.854 8 N -0.595 5.595 9 C -0.201 4.201 10 H 0.083 0.917 11 C -0.005 4.005 12 N -0.923 5.923 13 Si 0.898 3.102 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.278 1.278 17 C 0.537 3.463 18 O -0.454 6.454 19 C 0.161 3.839 20 C -0.239 4.239 21 C 0.418 3.582 22 O -0.485 6.485 23 C -0.202 4.202 24 C -0.025 4.025 25 C -0.166 4.166 26 C -0.055 4.055 27 C -0.178 4.178 28 C 0.200 3.800 29 N -0.613 5.613 30 H 0.422 0.578 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.019 0.981 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.163 0.837 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.548 -2.882 11.940 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.340 5.340 3 C -0.007 4.007 4 C 0.014 3.986 5 H 0.059 0.941 6 C -0.194 4.194 7 C 0.021 3.979 8 N -0.321 5.321 9 C -0.328 4.328 10 H 0.100 0.900 11 C -0.201 4.201 12 N -0.570 5.570 13 Si 0.728 3.272 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.321 3.679 18 O -0.323 6.323 19 C 0.051 3.949 20 C -0.266 4.266 21 C 0.304 3.696 22 O -0.366 6.366 23 C -0.206 4.206 24 C -0.044 4.044 25 C -0.186 4.186 26 C -0.074 4.074 27 C -0.199 4.199 28 C 0.096 3.904 29 N -0.235 5.235 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.180 0.820 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.259 -3.615 11.586 22.764 hybrid contribution -0.028 -0.469 -0.149 0.493 sum -19.287 -4.084 11.437 22.792 Atomic orbital electron populations 1.22337 0.81237 1.04854 1.01433 1.47640 1.05953 1.06541 1.73875 1.22066 0.98027 0.82099 0.98548 1.22674 0.93090 0.91883 0.90991 0.94064 1.23764 0.99319 0.94962 1.01367 1.22368 1.00635 0.83691 0.91249 1.45972 1.33434 1.05050 1.47604 1.19101 1.01255 0.82629 1.29862 0.89961 1.24733 0.96927 0.97056 1.01384 1.69799 1.16921 1.28220 1.42081 0.86397 0.78383 0.84274 0.78172 1.21183 1.21747 1.20368 1.18003 0.87541 0.82391 0.79983 1.90994 1.11674 1.85299 1.44324 1.20301 0.83819 0.96208 0.94554 1.22488 1.04000 0.92662 1.07441 1.18518 0.85480 0.87986 0.77570 1.90710 1.68813 1.38872 1.38218 1.20398 0.98464 0.94113 1.07628 1.20885 0.93096 0.96542 0.93871 1.20847 0.96188 0.99166 1.02362 1.21096 0.99167 0.91814 0.95295 1.20643 0.92906 1.00079 1.06308 1.17981 0.91525 0.85672 0.95225 1.42424 1.13079 1.12948 1.55004 0.73267 0.92265 0.89659 0.89904 0.91134 0.88262 0.93247 0.90612 0.96278 0.89806 0.93946 0.81971 0.84449 0.85352 0.85135 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.41 8.84 59.85 0.53 0.94 16 2 N -0.61 -8.84 2.88 -182.53 -0.53 -9.36 16 3 C 0.12 1.83 5.41 -4.04 -0.02 1.81 16 4 C 0.12 2.29 4.52 -66.86 -0.30 1.98 16 5 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 6 C -0.16 -2.77 7.86 -25.80 -0.20 -2.98 16 7 C 0.15 3.39 7.81 -2.97 -0.02 3.37 16 8 N -0.59 -14.88 3.56 -170.76 -0.61 -15.48 16 9 C -0.20 -5.69 9.22 -15.06 -0.14 -5.82 16 10 H 0.08 2.30 4.60 -52.49 -0.24 2.06 16 11 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 12 N -0.92 -28.22 11.26 55.49 0.62 -27.59 16 13 Si 0.90 24.19 29.55 -169.99 -5.02 19.16 16 14 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 15 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 16 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 17 C 0.54 9.56 6.05 -12.13 -0.07 9.49 16 18 O -0.45 -10.27 13.30 5.38 0.07 -10.19 16 19 C 0.16 2.51 6.20 -82.59 -0.51 2.00 16 20 C -0.24 -4.37 9.46 -39.03 -0.37 -4.74 16 21 C 0.42 7.39 6.97 -34.47 -0.24 7.15 16 22 O -0.48 -9.92 17.34 4.98 0.09 -9.83 16 23 C -0.20 -2.79 5.89 -104.81 -0.62 -3.41 16 24 C -0.03 -0.29 9.61 -39.66 -0.38 -0.67 16 25 C -0.17 -1.41 9.97 -39.92 -0.40 -1.81 16 26 C -0.05 -0.39 10.01 -39.53 -0.40 -0.79 16 27 C -0.18 -1.40 9.91 -39.38 -0.39 -1.79 16 28 C 0.20 2.23 6.66 -84.00 -0.56 1.67 16 29 N -0.61 -6.83 3.88 -7.43 -0.03 -6.86 16 30 H 0.42 3.37 4.79 -40.82 -0.20 3.18 16 31 H 0.06 0.33 7.59 -51.93 -0.39 -0.06 16 32 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 33 H 0.08 0.74 4.99 -51.93 -0.26 0.48 16 34 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 35 H 0.10 1.92 7.16 -51.93 -0.37 1.55 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 2.20 6.73 -51.93 -0.35 1.85 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.16 3.39 7.77 -52.49 -0.41 2.99 16 42 H 0.14 1.57 7.78 -52.49 -0.41 1.16 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -37.29 365.45 -9.64 -46.93 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.55 Total: 1.56 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -4.19 Total: 6.16 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.54 Total: -59.30 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.16 Total: -20.03 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.02 Total: 19.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.29 -9.64 -46.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085705324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.303 kcal (2) G-P(sol) polarization free energy of solvation -37.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds