Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99742 * 2 1 4 4 C 1.52997 * 109.46920 * 277.64811 * 3 2 1 5 5 H 1.09000 * 112.96530 * 49.01425 * 4 3 2 6 6 C 1.53953 * 113.76639 * 180.68647 * 4 3 2 7 7 C 1.53945 * 86.28983 * 137.91011 * 6 4 3 8 8 N 1.47574 * 113.77295 * 277.17902 * 4 3 2 9 9 C 1.36937 * 134.49023 * 41.06350 * 8 4 3 10 10 H 1.07996 * 120.00343 * 11.18314 * 9 8 4 11 11 C 1.38819 * 120.00093 * 191.18909 * 9 8 4 12 12 N 1.31620 * 119.99444 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00266 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47179 * 59.99251 * 13 11 9 15 15 H 1.48504 * 109.47484 * 179.97438 * 13 11 9 16 16 H 1.48511 * 109.47060 * 299.99523 * 13 11 9 17 17 C 1.34776 * 119.99986 * 180.02562 * 2 1 3 18 18 O 1.21489 * 119.99915 * 183.97557 * 17 2 1 19 19 C 1.48285 * 119.99904 * 3.97605 * 17 2 1 20 20 C 1.35686 * 118.86793 * 150.41324 * 19 17 2 21 21 C 1.42053 * 119.93062 * 179.73364 * 20 19 17 22 22 O 1.21931 * 121.06407 * 180.02562 * 21 20 19 23 23 C 1.47220 * 117.86737 * 0.52515 * 21 20 19 24 24 C 1.39583 * 121.36271 * 179.78514 * 23 21 20 25 25 C 1.36642 * 119.69572 * 179.77982 * 24 23 21 26 26 C 1.38885 * 120.55651 * 359.91130 * 25 24 23 27 27 C 1.37713 * 120.71977 * 0.06778 * 26 25 24 28 28 C 1.39291 * 119.71909 * 359.97438 * 27 26 25 29 29 N 1.36467 * 118.87364 * 330.43522 * 19 17 2 30 30 H 0.96998 * 119.17817 * 359.97438 * 29 19 17 31 31 H 1.09003 * 109.47245 * 274.14512 * 1 2 3 32 32 H 1.09000 * 109.47388 * 34.14755 * 1 2 3 33 33 H 1.08999 * 109.47474 * 154.14676 * 1 2 3 34 34 H 1.08997 * 109.46985 * 37.65508 * 3 2 1 35 35 H 1.08996 * 109.46750 * 157.64804 * 3 2 1 36 36 H 1.09000 * 113.74276 * 252.26041 * 6 4 3 37 37 H 1.09003 * 113.73819 * 23.45282 * 6 4 3 38 38 H 1.08997 * 113.76534 * 90.69432 * 7 6 4 39 39 H 1.08995 * 113.76821 * 221.97924 * 7 6 4 40 40 H 0.97011 * 119.99516 * 180.02562 * 12 11 9 41 41 H 1.07995 * 120.02992 * 359.97438 * 20 19 17 42 42 H 1.08002 * 120.15371 * 359.70871 * 24 23 21 43 43 H 1.08001 * 119.72023 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.63987 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.14003 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2861 1.8064 -1.4297 5 1 1.3249 1.8084 -1.9437 6 6 3.0548 3.1352 -1.5463 7 6 3.7041 2.5336 -2.8058 8 7 3.3847 1.2174 -2.2196 9 6 3.9005 -0.0439 -2.3546 10 1 3.3707 -0.8908 -1.9443 11 6 5.1046 -0.2339 -3.0187 12 7 5.7502 0.7982 -3.5191 13 14 5.8080 -1.9545 -3.2034 14 1 4.8473 -2.8043 -3.9519 15 1 7.0920 -1.8873 -3.9465 16 1 6.0435 -2.5400 -1.8591 17 6 2.1389 -1.1672 -0.0005 18 8 3.3515 -1.1685 0.0724 19 6 1.4001 -2.4498 -0.0901 20 6 2.0027 -3.5131 -0.6794 21 6 1.3179 -4.7542 -0.7724 22 8 1.8399 -5.7231 -1.2972 23 6 -0.0466 -4.8299 -0.2248 24 6 -0.7875 -6.0115 -0.2812 25 6 -2.0494 -6.0449 0.2417 26 6 -2.6000 -4.9137 0.8302 27 6 -1.8867 -3.7376 0.8971 28 6 -0.5988 -3.6801 0.3698 29 7 0.1373 -2.5201 0.4224 30 1 -0.2505 -1.7321 0.8342 31 1 -0.3634 0.0743 1.0250 32 1 -0.3634 0.8505 -0.5768 33 1 -0.3634 -0.9248 -0.4481 34 1 1.6745 1.9902 0.6278 35 1 3.2022 1.1082 0.3908 36 1 2.4165 3.9951 -1.7495 37 1 3.7556 3.3099 -0.7298 38 1 3.1603 2.7485 -3.7256 39 1 4.7727 2.7328 -2.8870 40 1 6.5914 0.6653 -3.9835 41 1 3.0035 -3.4170 -1.0738 42 1 -0.3657 -6.8951 -0.7371 43 1 -2.6232 -6.9588 0.1979 44 1 -3.5986 -4.9568 1.2393 45 1 -2.3241 -2.8635 1.3565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085705324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 48.729638 kcal Electronic energy + Delta-G solvation = -30322.140546 eV Core-core repulsion = 26307.341277 eV Total energy + Delta-G solvation = -4014.799269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68922 -41.01291 -39.49132 -39.27771 -38.14628 -36.69368 -34.17826 -33.34008 -32.02995 -31.21381 -29.95036 -29.60362 -28.00744 -26.00779 -25.23833 -24.78915 -23.78837 -23.32652 -21.38365 -20.79893 -19.69126 -19.39091 -18.83614 -18.73371 -17.72028 -17.30155 -17.08989 -16.68152 -16.43460 -16.14604 -15.79082 -15.71556 -15.37290 -15.12166 -15.07925 -14.81468 -14.58426 -14.50548 -14.42607 -14.08514 -13.43029 -13.31862 -13.12351 -13.00510 -12.90057 -12.77473 -12.65751 -12.45535 -12.37435 -12.24538 -11.81324 -11.47070 -11.43771 -11.25167 -10.81102 -10.72189 -10.57687 -10.07257 -9.73209 -8.91175 -8.73973 -7.84921 -5.13857 -0.70942 -0.19374 0.52373 1.31072 1.32345 1.38624 1.42210 1.45165 1.82934 2.14258 2.45358 2.87380 2.96868 3.22711 3.37611 3.43703 3.57638 3.78175 3.92897 3.97352 4.05322 4.23910 4.24923 4.33835 4.35727 4.38812 4.45614 4.55622 4.67800 4.74290 4.75629 4.80393 4.89903 4.93469 5.01379 5.10370 5.15426 5.35323 5.38682 5.43101 5.48132 5.52528 5.69213 5.79560 5.83596 5.99113 6.07688 6.17135 6.60646 6.90619 7.03384 7.71717 8.63657 9.30440 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.004136 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.334699 B = 6768.345680 C = 8485.105757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.596 5.596 3 C 0.120 3.880 4 C 0.124 3.876 5 H 0.067 0.933 6 C -0.123 4.123 7 C 0.131 3.869 8 N -0.629 5.629 9 C -0.177 4.177 10 H 0.079 0.921 11 C -0.066 4.066 12 N -0.952 5.952 13 Si 0.933 3.067 14 H -0.291 1.291 15 H -0.288 1.288 16 H -0.292 1.292 17 C 0.532 3.468 18 O -0.517 6.517 19 C 0.197 3.803 20 C -0.291 4.291 21 C 0.405 3.595 22 O -0.545 6.545 23 C -0.225 4.225 24 C -0.053 4.053 25 C -0.148 4.148 26 C -0.041 4.041 27 C -0.155 4.155 28 C 0.184 3.816 29 N -0.580 5.580 30 H 0.442 0.558 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.018 0.982 39 H 0.044 0.956 40 H 0.241 0.759 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.158 0.842 44 H 0.180 0.820 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.696 -0.803 15.331 31.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.329 5.329 3 C -0.003 4.003 4 C 0.018 3.982 5 H 0.084 0.916 6 C -0.162 4.162 7 C 0.005 3.995 8 N -0.355 5.355 9 C -0.307 4.307 10 H 0.097 0.903 11 C -0.257 4.257 12 N -0.604 5.604 13 Si 0.765 3.235 14 H -0.218 1.218 15 H -0.214 1.214 16 H -0.219 1.219 17 C 0.316 3.684 18 O -0.391 6.391 19 C 0.083 3.917 20 C -0.320 4.320 21 C 0.297 3.703 22 O -0.432 6.432 23 C -0.228 4.228 24 C -0.071 4.071 25 C -0.167 4.167 26 C -0.059 4.059 27 C -0.175 4.175 28 C 0.081 3.919 29 N -0.204 5.204 30 H 0.292 0.708 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.176 0.824 44 H 0.197 0.803 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -26.557 -1.485 15.030 30.551 hybrid contribution 1.816 -1.067 -1.031 2.345 sum -24.741 -2.552 13.999 28.541 Atomic orbital electron populations 1.22834 0.77030 1.05947 1.05344 1.47782 1.08538 1.04906 1.71681 1.21966 0.97518 0.83537 0.97269 1.22978 0.92192 0.91296 0.91758 0.91597 1.23479 0.98867 0.96004 0.97801 1.22397 0.98924 0.84202 0.93940 1.46377 1.35658 1.04282 1.49221 1.19304 1.00332 0.84469 1.26577 0.90326 1.25175 0.98381 0.98519 1.03670 1.69925 1.17218 1.28676 1.44531 0.85814 0.77963 0.82559 0.77148 1.21817 1.21404 1.21916 1.18385 0.87095 0.83829 0.79088 1.90974 1.14455 1.86257 1.47378 1.19874 0.85034 0.94201 0.92575 1.22156 1.03207 0.94913 1.11684 1.18933 0.87393 0.86899 0.77083 1.90648 1.70553 1.40204 1.41754 1.20258 0.96532 0.96626 1.09427 1.20935 0.94833 0.95530 0.95836 1.21276 0.94377 1.01210 0.99819 1.21715 1.00760 0.90380 0.93055 1.21217 0.90394 1.02125 1.03795 1.18262 0.93016 0.84416 0.96248 1.42372 1.10882 1.14045 1.53062 0.70831 0.86881 0.87396 0.89960 0.84981 0.92288 0.88464 0.90482 0.96464 0.93799 0.94994 0.86697 0.86010 0.82401 0.80278 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 8.84 127.77 1.13 1.47 16 2 N -0.60 -15.46 2.88 -849.71 -2.45 -17.91 16 3 C 0.12 3.39 5.41 86.38 0.47 3.85 16 4 C 0.12 4.25 4.52 45.10 0.20 4.46 16 5 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 6 C -0.12 -4.00 7.86 31.26 0.25 -3.76 16 7 C 0.13 6.12 7.81 86.48 0.68 6.80 16 8 N -0.63 -31.78 3.56 -694.18 -2.47 -34.25 16 9 C -0.18 -10.50 9.22 84.04 0.78 -9.73 16 10 H 0.08 4.67 4.60 -2.91 -0.01 4.66 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 12 N -0.95 -61.79 11.26 21.65 0.24 -61.55 16 13 Si 0.93 53.85 29.55 68.60 2.03 55.88 16 14 H -0.29 -16.73 7.11 99.48 0.71 -16.02 16 15 H -0.29 -16.23 7.11 99.48 0.71 -15.52 16 16 H -0.29 -17.24 7.11 99.48 0.71 -16.53 16 17 C 0.53 19.04 6.05 86.92 0.53 19.57 16 18 O -0.52 -24.89 13.30 -3.68 -0.05 -24.93 16 19 C 0.20 6.25 6.20 40.51 0.25 6.50 16 20 C -0.29 -11.91 9.46 22.62 0.21 -11.69 16 21 C 0.41 15.96 6.97 25.58 0.18 16.14 16 22 O -0.54 -25.45 17.34 -5.09 -0.09 -25.54 16 23 C -0.22 -6.26 5.89 -19.99 -0.12 -6.38 16 24 C -0.05 -1.19 9.61 22.22 0.21 -0.98 16 25 C -0.15 -1.86 9.97 22.05 0.22 -1.64 16 26 C -0.04 -0.29 10.01 22.30 0.22 -0.06 16 27 C -0.16 -1.34 9.91 22.40 0.22 -1.12 16 28 C 0.18 3.49 6.66 39.12 0.26 3.75 16 29 N -0.58 -11.12 3.88 -177.43 -0.69 -11.81 16 30 H 0.44 4.47 4.79 -92.71 -0.44 4.02 16 31 H 0.11 0.25 7.59 -2.39 -0.02 0.24 16 32 H 0.11 0.93 8.01 -2.39 -0.02 0.92 16 33 H 0.08 1.00 4.99 -2.39 -0.01 0.99 16 34 H 0.13 2.22 8.13 -2.39 -0.02 2.20 16 35 H 0.06 2.23 7.16 -2.39 -0.02 2.21 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.04 2.40 6.73 -2.39 -0.02 2.39 16 40 H 0.24 15.45 8.31 -92.70 -0.77 14.68 16 41 H 0.11 5.68 7.77 -2.91 -0.02 5.66 16 42 H 0.12 3.03 7.78 -2.91 -0.02 3.00 16 43 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.18 -0.24 8.06 -2.91 -0.02 -0.27 16 45 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 Total: -1.00 -98.74 365.45 3.28 -95.45 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 0.60 Total: 1.16 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.15 Total: 23.50 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.36 Total: -125.52 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.14 Total: -50.47 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 2.03 Total: 55.88 kcal Total: -98.74 3.28 -95.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085705324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.184 kcal (2) G-P(sol) polarization free energy of solvation -98.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds