Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99703 * 2 1 4 4 C 1.53004 * 109.47172 * 274.73092 * 3 2 1 5 5 H 1.09005 * 112.96610 * 65.31585 * 4 3 2 6 6 C 1.53946 * 113.76697 * 293.64339 * 4 3 2 7 7 C 1.53950 * 86.28724 * 222.09132 * 6 4 3 8 8 N 1.47576 * 113.77324 * 196.99992 * 4 3 2 9 9 C 1.36941 * 134.48916 * 318.93093 * 8 4 3 10 10 H 1.08000 * 119.99848 * 5.89838 * 9 8 4 11 11 C 1.38811 * 119.99628 * 185.89644 * 9 8 4 12 12 N 1.31612 * 120.00251 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99625 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47284 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47124 * 120.00253 * 13 11 9 16 16 H 1.48503 * 109.46979 * 240.00120 * 13 11 9 17 17 C 1.34773 * 120.00291 * 179.97438 * 2 1 3 18 18 O 1.21477 * 120.00023 * 182.41746 * 17 2 1 19 19 C 1.48289 * 119.99934 * 2.42701 * 17 2 1 20 20 C 1.35675 * 118.87251 * 153.65976 * 19 17 2 21 21 C 1.42063 * 119.93733 * 180.02562 * 20 19 17 22 22 O 1.21927 * 121.06635 * 179.97438 * 21 20 19 23 23 C 1.47212 * 117.85991 * 0.02562 * 21 20 19 24 24 C 1.39593 * 121.36269 * 180.02562 * 23 21 20 25 25 C 1.36642 * 119.69141 * 179.97438 * 24 23 21 26 26 C 1.38880 * 120.56637 * 0.02562 * 25 24 23 27 27 C 1.37711 * 120.71374 * 359.97286 * 26 25 24 28 28 C 1.39293 * 119.72339 * 359.75888 * 27 26 25 29 29 N 1.36474 * 118.86943 * 333.67839 * 19 17 2 30 30 H 0.97001 * 119.17953 * 359.95122 * 29 19 17 31 31 H 1.08998 * 109.46661 * 269.78917 * 1 2 3 32 32 H 1.09000 * 109.47116 * 29.79424 * 1 2 3 33 33 H 1.08999 * 109.46632 * 149.79383 * 1 2 3 34 34 H 1.09003 * 109.47146 * 34.72456 * 3 2 1 35 35 H 1.08998 * 109.47047 * 154.73110 * 3 2 1 36 36 H 1.08997 * 113.74404 * 336.43256 * 6 4 3 37 37 H 1.09001 * 113.74567 * 107.63593 * 6 4 3 38 38 H 1.09004 * 113.76905 * 137.91405 * 7 6 4 39 39 H 1.09002 * 113.76442 * 269.18664 * 7 6 4 40 40 H 0.97001 * 119.99908 * 180.02562 * 12 11 9 41 41 H 1.07997 * 120.03213 * 0.03566 * 20 19 17 42 42 H 1.08000 * 120.15246 * 0.02562 * 24 23 21 43 43 H 1.08008 * 119.71381 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.64419 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.13659 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3495 1.7700 -1.4376 5 1 1.3971 2.0272 -1.9013 6 6 3.2452 0.8765 -2.3147 7 6 3.8424 2.1853 -2.8630 8 7 3.3889 2.8049 -1.6001 9 6 3.7765 3.8982 -0.8723 10 1 3.3316 4.0898 0.0929 11 6 4.7413 4.7602 -1.3753 12 7 5.2832 4.5270 -2.5519 13 14 5.2707 6.2512 -0.3823 14 1 4.5159 6.2880 0.8961 15 1 6.7253 6.1647 -0.0965 16 1 4.9911 7.4868 -1.1572 17 6 2.1390 -1.1671 0.0005 18 8 3.3530 -1.1675 0.0449 19 6 1.3986 -2.4508 -0.0533 20 6 2.0125 -3.5396 -0.5810 21 6 1.3241 -4.7806 -0.6442 22 8 1.8558 -5.7719 -1.1146 23 6 -0.0524 -4.8310 -0.1246 24 6 -0.7958 -6.0123 -0.1501 25 6 -2.0705 -6.0205 0.3419 26 6 -2.6326 -4.8638 0.8664 27 6 -1.9173 -3.6876 0.9015 28 6 -0.6141 -3.6569 0.4106 29 7 0.1229 -2.4964 0.4293 30 1 -0.2726 -1.6908 0.7975 31 1 -0.3632 -0.0038 1.0277 32 1 -0.3633 0.8918 -0.5106 33 1 -0.3632 -0.8881 -0.5170 34 1 1.6476 2.0057 0.5854 35 1 3.1840 1.1188 0.4387 36 1 3.9547 0.2745 -1.7471 37 1 2.6956 0.2980 -3.0572 38 1 4.9261 2.1599 -2.9770 39 1 3.3306 2.5650 -3.7473 40 1 5.9576 5.1291 -2.9032 41 1 3.0237 -3.4629 -0.9524 42 1 -0.3651 -6.9156 -0.5560 43 1 -2.6462 -6.9341 0.3220 44 1 -3.6412 -4.8873 1.2517 45 1 -2.3634 -2.7937 1.3118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085705325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = 44.829188 kcal Electronic energy + Delta-G solvation = -29287.365478 eV Core-core repulsion = 25272.397073 eV Total energy + Delta-G solvation = -4014.968405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68187 -41.07678 -39.56069 -39.23964 -38.14586 -36.78776 -34.23923 -33.29301 -32.02188 -31.20275 -29.88879 -29.81472 -28.11117 -26.04855 -25.28164 -24.75527 -23.91160 -23.27772 -21.50508 -20.83948 -19.62103 -19.36617 -18.84528 -18.57981 -17.69825 -17.36206 -17.27303 -16.70144 -16.42713 -16.19302 -15.80739 -15.68932 -15.35975 -15.15779 -15.05844 -14.79531 -14.54528 -14.42781 -14.23173 -14.12579 -13.92196 -13.39055 -13.26007 -12.97955 -12.86192 -12.79793 -12.60490 -12.55403 -12.26439 -12.21174 -11.85333 -11.62213 -11.45599 -11.30037 -10.87306 -10.75756 -10.56336 -10.04288 -9.87607 -8.90793 -8.86100 -7.89732 -5.22884 -0.69316 -0.15342 0.54366 1.36556 1.37473 1.45767 1.47107 1.56650 1.80339 2.10502 2.48002 2.90219 2.92465 3.26454 3.32165 3.40726 3.61224 3.80875 3.87190 3.95778 3.99535 4.14410 4.24225 4.29475 4.37147 4.38955 4.41170 4.47008 4.68743 4.72407 4.74142 4.79726 4.83152 4.92362 4.98371 5.04345 5.06159 5.15213 5.30973 5.40856 5.50160 5.53266 5.55620 5.69186 5.83257 5.92544 6.00374 6.07155 6.66388 6.74234 6.90821 7.62339 8.58049 9.28968 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.002440 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.699801 B =11472.935313 C =12092.541178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.590 5.590 3 C 0.127 3.873 4 C 0.136 3.864 5 H 0.068 0.932 6 C -0.141 4.141 7 C 0.159 3.841 8 N -0.628 5.628 9 C -0.224 4.224 10 H 0.094 0.906 11 C -0.075 4.075 12 N -0.959 5.959 13 Si 0.977 3.023 14 H -0.257 1.257 15 H -0.299 1.299 16 H -0.294 1.294 17 C 0.546 3.454 18 O -0.538 6.538 19 C 0.191 3.809 20 C -0.273 4.273 21 C 0.408 3.592 22 O -0.539 6.539 23 C -0.226 4.226 24 C -0.051 4.051 25 C -0.151 4.151 26 C -0.044 4.044 27 C -0.160 4.160 28 C 0.186 3.814 29 N -0.588 5.588 30 H 0.439 0.561 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.021 0.979 40 H 0.246 0.754 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.174 0.826 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.503 -16.800 10.264 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.322 5.322 3 C 0.004 3.996 4 C 0.030 3.970 5 H 0.085 0.915 6 C -0.179 4.179 7 C 0.033 3.967 8 N -0.355 5.355 9 C -0.352 4.352 10 H 0.111 0.889 11 C -0.267 4.267 12 N -0.608 5.608 13 Si 0.805 3.195 14 H -0.181 1.181 15 H -0.227 1.227 16 H -0.221 1.221 17 C 0.332 3.668 18 O -0.414 6.414 19 C 0.078 3.922 20 C -0.301 4.301 21 C 0.299 3.701 22 O -0.425 6.425 23 C -0.229 4.229 24 C -0.070 4.070 25 C -0.170 4.170 26 C -0.062 4.062 27 C -0.180 4.180 28 C 0.083 3.917 29 N -0.212 5.212 30 H 0.290 0.710 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.173 0.827 44 H 0.191 0.809 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -24.439 -16.961 10.151 31.432 hybrid contribution 1.363 1.319 -0.204 1.907 sum -23.076 -15.642 9.946 29.599 Atomic orbital electron populations 1.22860 0.76812 1.06705 1.04927 1.47773 1.08692 1.04640 1.71119 1.21595 0.97438 0.83423 0.97168 1.22681 0.92767 0.87089 0.94512 0.91492 1.23585 0.99165 0.95984 0.99152 1.22046 0.97251 0.88724 0.88648 1.46330 1.36202 1.29230 1.23691 1.19484 1.17194 0.99341 0.99158 0.88853 1.25697 1.00749 1.02168 0.98105 1.70046 1.31360 1.39553 1.19872 0.85027 0.77270 0.78888 0.78270 1.18130 1.22657 1.22118 1.18406 0.87012 0.83500 0.77915 1.90877 1.14478 1.86512 1.49522 1.19712 0.84799 0.93897 0.93830 1.22236 1.03284 0.93283 1.11278 1.18872 0.87204 0.87517 0.76527 1.90670 1.70474 1.38793 1.42563 1.20324 0.96876 0.95795 1.09945 1.20947 0.94644 0.96008 0.95361 1.21258 0.94565 1.00807 1.00353 1.21671 1.00883 0.90586 0.93092 1.21187 0.90529 1.01976 1.04303 1.18182 0.92735 0.84529 0.96259 1.42533 1.10365 1.13063 1.55229 0.71015 0.87535 0.87419 0.88563 0.88022 0.91837 0.91381 0.91038 0.95496 0.96070 0.94513 0.84363 0.85721 0.82730 0.80885 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 8.79 127.77 1.12 1.37 16 2 N -0.59 -12.73 2.81 -849.69 -2.39 -15.12 16 3 C 0.13 3.81 5.40 86.38 0.47 4.28 16 4 C 0.14 5.02 4.57 45.09 0.21 5.22 16 5 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 6 C -0.14 -5.60 7.26 31.25 0.23 -5.38 16 7 C 0.16 7.93 7.38 86.44 0.64 8.57 16 8 N -0.63 -31.55 3.58 -690.91 -2.47 -34.02 16 9 C -0.22 -12.15 10.51 84.03 0.88 -11.27 16 10 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 11 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 12 N -0.96 -59.42 11.56 21.65 0.25 -59.17 16 13 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 14 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 17 C 0.55 14.81 7.10 86.92 0.62 15.43 16 18 O -0.54 -20.13 14.51 -3.64 -0.05 -20.18 16 19 C 0.19 4.31 6.25 40.50 0.25 4.56 16 20 C -0.27 -7.87 9.46 22.62 0.21 -7.66 16 21 C 0.41 12.18 6.97 25.58 0.18 12.36 16 22 O -0.54 -19.91 17.34 -5.08 -0.09 -20.00 16 23 C -0.23 -4.84 5.89 -19.98 -0.12 -4.96 16 24 C -0.05 -0.89 9.61 22.22 0.21 -0.68 16 25 C -0.15 -1.41 9.97 22.05 0.22 -1.19 16 26 C -0.04 -0.21 10.01 22.30 0.22 0.02 16 27 C -0.16 -0.92 9.91 22.40 0.22 -0.70 16 28 C 0.19 2.59 6.66 39.12 0.26 2.85 16 29 N -0.59 -7.81 3.95 -177.42 -0.70 -8.51 16 30 H 0.44 2.64 4.42 -92.71 -0.41 2.23 16 31 H 0.11 0.14 7.34 -2.39 -0.02 0.12 16 32 H 0.11 0.81 8.07 -2.39 -0.02 0.79 16 33 H 0.10 0.65 5.34 -2.39 -0.01 0.64 16 34 H 0.10 2.56 8.11 -2.39 -0.02 2.54 16 35 H 0.06 2.41 7.25 -2.39 -0.02 2.40 16 36 H 0.07 2.99 6.68 -2.39 -0.02 2.97 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.03 1.53 7.46 -2.39 -0.02 1.51 16 39 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.14 4.55 7.72 -2.91 -0.02 4.53 16 42 H 0.12 2.41 7.78 -2.91 -0.02 2.39 16 43 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.17 -0.46 8.06 -2.91 -0.02 -0.49 16 45 H 0.18 -0.41 8.06 -2.91 -0.02 -0.44 16 Total: -1.00 -86.40 370.78 3.49 -82.90 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.62 Total: 7.38 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.29 Total: 19.03 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -5.31 Total: -116.82 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.14 Total: -40.17 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -86.40 3.49 -82.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085705325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.732 kcal (2) G-P(sol) polarization free energy of solvation -86.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds