Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00541 * 2 1 4 4 C 1.53004 * 109.47120 * 264.56623 * 3 2 1 5 5 H 1.09003 * 112.96192 * 293.60823 * 4 3 2 6 6 C 1.53940 * 113.77444 * 65.28833 * 4 3 2 7 7 C 1.53944 * 86.29118 * 137.90964 * 6 4 3 8 8 N 1.47582 * 113.76865 * 161.93534 * 4 3 2 9 9 C 1.36942 * 134.49225 * 41.06207 * 8 4 3 10 10 H 1.08001 * 119.99892 * 341.74866 * 9 8 4 11 11 C 1.38807 * 119.99734 * 161.75274 * 9 8 4 12 12 N 1.31617 * 120.00195 * 166.15620 * 11 9 8 13 13 Si 1.86806 * 120.00342 * 346.15752 * 11 9 8 14 14 H 1.48501 * 109.47125 * 85.05953 * 13 11 9 15 15 H 1.48496 * 109.47486 * 205.06559 * 13 11 9 16 16 H 1.48506 * 109.46719 * 325.06292 * 13 11 9 17 17 C 1.34776 * 119.99622 * 180.02562 * 2 1 3 18 18 O 1.21500 * 119.99685 * 183.52235 * 17 2 1 19 19 C 1.48344 * 120.00443 * 3.51855 * 17 2 1 20 20 C 1.41918 * 126.84857 * 173.40844 * 19 17 2 21 21 C 1.36711 * 103.81521 * 180.02562 * 20 19 17 22 22 C 1.47857 * 126.81255 * 180.02562 * 21 20 19 23 23 C 1.39562 * 120.14074 * 180.02562 * 22 21 20 24 24 C 1.37963 * 119.85643 * 180.02562 * 23 22 21 25 25 C 1.38362 * 120.14192 * 359.97438 * 24 23 22 26 26 C 1.38353 * 120.28582 * 0.28064 * 25 24 23 27 27 C 1.37958 * 120.14770 * 359.44125 * 26 25 24 28 28 O 1.34463 * 106.36789 * 0.26226 * 21 20 19 29 29 N 1.20874 * 111.73616 * 359.52519 * 28 21 20 30 30 H 1.09003 * 109.46875 * 264.45400 * 1 2 3 31 31 H 1.09002 * 109.47057 * 24.44189 * 1 2 3 32 32 H 1.08994 * 109.47400 * 144.45143 * 1 2 3 33 33 H 1.09006 * 109.46575 * 24.55740 * 3 2 1 34 34 H 1.08995 * 109.47501 * 144.55820 * 3 2 1 35 35 H 1.09002 * 113.74208 * 252.25490 * 6 4 3 36 36 H 1.08999 * 113.74149 * 23.45486 * 6 4 3 37 37 H 1.08998 * 113.77376 * 90.69190 * 7 6 4 38 38 H 1.09005 * 113.76889 * 221.98440 * 7 6 4 39 39 H 0.97001 * 120.00237 * 179.97438 * 12 11 9 40 40 H 1.08003 * 128.08678 * 359.97438 * 20 19 17 41 41 H 1.08001 * 120.07276 * 359.97438 * 23 22 21 42 42 H 1.07995 * 119.92939 * 180.02562 * 24 23 22 43 43 H 1.07991 * 119.85271 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.92525 * 179.72695 * 26 25 24 45 45 H 1.08006 * 120.07743 * 180.27953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.5709 1.6420 -1.4361 5 1 3.2890 0.9534 -1.8815 6 6 1.3575 1.9404 -2.3351 7 6 2.1802 3.1205 -2.8832 8 7 2.9253 3.0643 -1.6079 9 6 3.6516 3.9673 -0.8782 10 1 3.8594 3.7767 0.1643 11 6 4.1206 5.1276 -1.4786 12 7 4.5747 6.1153 -0.7366 13 14 4.1072 5.2875 -3.3398 14 1 2.7743 5.7667 -3.7859 15 1 5.1488 6.2587 -3.7607 16 1 4.3880 3.9641 -3.9522 17 6 2.1388 -1.1672 -0.0005 18 8 3.3521 -1.1683 0.0641 19 6 1.3992 -2.4507 -0.0799 20 6 1.9579 -3.7476 -0.2212 21 6 0.8676 -4.5720 -0.2441 22 6 0.8731 -6.0448 -0.3749 23 6 -0.3300 -6.7521 -0.3827 24 6 -0.3180 -8.1263 -0.5045 25 6 0.8832 -8.8032 -0.6193 26 6 2.0796 -8.1084 -0.6069 27 6 2.0812 -6.7336 -0.4915 28 8 -0.2109 -3.7773 -0.1293 29 7 0.0992 -2.6129 -0.0341 30 1 -0.3633 -0.0993 1.0229 31 1 -0.3633 0.9356 -0.4252 32 1 -0.3634 -0.8361 -0.5974 33 1 1.5697 2.0507 0.4271 34 1 3.1043 1.1647 0.5959 35 1 1.1573 1.1644 -3.0739 36 1 0.4669 2.2424 -1.7842 37 1 2.7844 2.8678 -3.7545 38 1 1.6017 4.0346 -3.0174 39 1 4.9028 6.9260 -1.1561 40 1 3.0006 -4.0195 -0.2945 41 1 -1.2683 -6.2250 -0.2927 42 1 -1.2483 -8.6748 -0.5111 43 1 0.8872 -9.8789 -0.7148 44 1 3.0141 -8.6430 -0.6925 45 1 3.0156 -6.1920 -0.4865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085709484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = 133.487325 kcal Electronic energy + Delta-G solvation = -28494.499571 eV Core-core repulsion = 24483.375671 eV Total energy + Delta-G solvation = -4011.123900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.28470 -39.87997 -39.55848 -38.14009 -35.43557 -34.37382 -33.52869 -32.21175 -31.48125 -30.03005 -28.97066 -28.34970 -26.73863 -24.89975 -24.16162 -23.38636 -22.99536 -22.34922 -21.95248 -19.73357 -19.14112 -18.18667 -18.07424 -17.19054 -16.77929 -16.67281 -16.06079 -15.65784 -15.46492 -15.33372 -15.12696 -14.37235 -14.20313 -13.95264 -13.75580 -13.69594 -13.45271 -13.20302 -13.03201 -12.90704 -12.82484 -12.30328 -11.98848 -11.84007 -11.65723 -11.58135 -11.44643 -11.04447 -10.74003 -10.71043 -10.63932 -10.27010 -10.14892 -10.08057 -9.95636 -9.49398 -9.41021 -8.88952 -8.81175 -8.47303 -7.09477 -5.89212 -3.24324 0.15071 0.87231 1.08383 1.73997 2.47532 2.81905 3.11274 3.32332 3.35908 3.46729 3.48061 3.70929 4.00181 4.38123 4.44617 4.55456 4.56771 4.67798 4.71570 4.78088 4.81962 4.92345 5.11270 5.21338 5.24743 5.32614 5.33141 5.48729 5.49385 5.55273 5.67516 5.76549 5.84743 5.90120 5.91018 5.93923 5.97456 6.10171 6.24068 6.33570 6.37639 6.39558 6.50270 6.54854 7.01978 7.26046 7.34861 7.70216 8.08304 8.37601 8.71566 9.66529 10.32815 11.27622 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.002074 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.794713 B =13497.172014 C =13690.029875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.589 5.589 3 C 0.119 3.881 4 C 0.130 3.870 5 H 0.053 0.947 6 C -0.144 4.144 7 C 0.098 3.902 8 N -0.614 5.614 9 C -0.228 4.228 10 H 0.098 0.902 11 C 0.018 3.982 12 N -0.919 5.919 13 Si 0.885 3.115 14 H -0.285 1.285 15 H -0.299 1.299 16 H -0.273 1.273 17 C 0.589 3.411 18 O -0.518 6.518 19 C -0.011 4.011 20 C -0.165 4.165 21 C 0.008 3.992 22 C -0.022 4.022 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.107 4.107 26 C -0.117 4.117 27 C -0.089 4.089 28 O 0.120 5.880 29 N -0.324 5.324 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.262 0.738 40 H 0.183 0.817 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 -30.754 0.204 33.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.322 5.322 3 C -0.004 4.004 4 C 0.023 3.977 5 H 0.071 0.929 6 C -0.182 4.182 7 C -0.027 4.027 8 N -0.342 5.342 9 C -0.354 4.354 10 H 0.115 0.885 11 C -0.180 4.180 12 N -0.564 5.564 13 Si 0.715 3.285 14 H -0.212 1.212 15 H -0.226 1.226 16 H -0.198 1.198 17 C 0.374 3.626 18 O -0.392 6.392 19 C -0.169 4.169 20 C -0.187 4.187 21 C -0.055 4.055 22 C -0.023 4.023 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.108 4.108 28 O 0.046 5.954 29 N -0.026 5.026 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.200 0.800 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.049 -29.451 0.511 32.216 hybrid contribution 0.878 -0.029 -1.189 1.479 sum -12.170 -29.480 -0.677 31.900 Atomic orbital electron populations 1.22179 0.78731 1.03964 1.02349 1.47705 1.07586 1.05817 1.71092 1.21822 0.97398 0.82247 0.98905 1.22518 0.93804 0.88359 0.93058 0.92939 1.23594 0.97656 0.98060 0.98931 1.22781 0.92454 0.96984 0.90451 1.46583 1.60629 1.04961 1.22074 1.18736 1.26754 0.96988 0.92960 0.88458 1.24958 0.98787 0.96682 0.97586 1.69743 1.46553 1.05631 1.34442 0.86789 0.77001 0.77270 0.87477 1.21240 1.22643 1.19795 1.16955 0.86279 0.81464 0.77945 1.90833 1.12425 1.86236 1.49687 1.23475 0.89902 0.96952 1.06535 1.22605 1.01230 0.89602 1.05293 1.22420 0.85763 0.92780 1.04535 1.17599 0.94757 0.85819 1.04149 1.21321 0.97323 0.94518 0.98030 1.21135 0.98547 0.93930 1.00056 1.21372 0.92484 1.00374 0.98262 1.21109 0.98684 0.93622 1.00088 1.21183 0.96805 0.94532 0.98231 1.84867 1.32974 1.11862 1.65709 1.74324 1.15671 0.96174 1.16458 0.92445 0.90261 0.89623 0.89085 0.89809 0.92628 0.90187 0.93952 0.92439 0.92758 0.79976 0.84900 0.85264 0.85536 0.85111 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.38 59.85 0.56 1.42 16 2 N -0.59 -9.12 2.78 -182.51 -0.51 -9.63 16 3 C 0.12 2.16 5.27 -4.04 -0.02 2.14 16 4 C 0.13 2.64 4.54 -66.86 -0.30 2.33 16 5 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 6 C -0.14 -2.52 7.30 -25.80 -0.19 -2.71 16 7 C 0.10 2.12 5.83 -2.85 -0.02 2.10 16 8 N -0.61 -15.11 3.32 -169.72 -0.56 -15.67 16 9 C -0.23 -6.56 10.94 -15.06 -0.16 -6.72 16 10 H 0.10 2.95 8.06 -52.49 -0.42 2.52 16 11 C 0.02 0.52 5.50 -17.43 -0.10 0.43 16 12 N -0.92 -28.89 13.97 55.49 0.78 -28.12 16 13 Si 0.88 23.12 25.15 -169.99 -4.27 18.85 16 14 H -0.29 -7.22 6.89 56.52 0.39 -6.83 16 15 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 16 H -0.27 -7.00 6.13 56.52 0.35 -6.65 16 17 C 0.59 9.64 7.66 -12.10 -0.09 9.55 16 18 O -0.52 -10.11 16.60 5.37 0.09 -10.02 16 19 C -0.01 -0.14 6.85 -82.62 -0.57 -0.71 16 20 C -0.17 -1.83 10.35 -38.73 -0.40 -2.23 16 21 C 0.01 0.07 7.15 -36.20 -0.26 -0.18 16 22 C -0.02 -0.17 5.87 -104.97 -0.62 -0.79 16 23 C -0.09 -0.60 9.73 -39.19 -0.38 -0.98 16 24 C -0.12 -0.61 10.03 -39.64 -0.40 -1.01 16 25 C -0.11 -0.51 10.04 -39.49 -0.40 -0.91 16 26 C -0.12 -0.62 10.03 -39.64 -0.40 -1.02 16 27 C -0.09 -0.59 9.58 -39.19 -0.38 -0.96 16 28 O 0.12 1.26 11.01 16.05 0.18 1.44 16 29 N -0.32 -3.93 8.67 33.35 0.29 -3.64 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.89 6.63 -51.93 -0.34 0.55 16 32 H 0.09 1.01 5.35 -51.93 -0.28 0.73 16 33 H 0.09 1.62 8.03 -51.93 -0.42 1.21 16 34 H 0.08 1.69 7.54 -51.93 -0.39 1.30 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 37 H 0.04 0.93 6.63 -51.93 -0.34 0.59 16 38 H 0.06 1.25 7.18 -51.93 -0.37 0.88 16 39 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 40 H 0.18 1.72 7.46 -52.48 -0.39 1.33 16 41 H 0.13 0.70 7.96 -52.49 -0.42 0.28 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 45 H 0.13 0.72 7.15 -52.48 -0.38 0.35 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -34.59 373.50 -8.35 -42.95 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.85 Total: -1.53 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -4.11 Total: -0.25 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.01 Total: -57.06 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.27 Total: -8.58 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.27 Total: 18.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.59 -8.35 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085709484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.434 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds