Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00058 * 2 1 4 4 C 1.53006 * 109.47010 * 264.56820 * 3 2 1 5 5 H 1.08990 * 112.96721 * 294.21026 * 4 3 2 6 6 C 1.53948 * 113.76572 * 65.89070 * 4 3 2 7 7 C 1.53944 * 86.28905 * 137.90668 * 6 4 3 8 8 N 1.47580 * 113.76796 * 162.53062 * 4 3 2 9 9 C 1.36938 * 134.49252 * 41.07370 * 8 4 3 10 10 H 1.08001 * 120.00340 * 4.75013 * 9 8 4 11 11 C 1.38815 * 120.00297 * 184.75532 * 9 8 4 12 12 N 1.31621 * 119.99479 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00352 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47163 * 59.99660 * 13 11 9 15 15 H 1.48496 * 109.47152 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47074 * 299.99456 * 13 11 9 17 17 C 1.34782 * 120.00002 * 179.97438 * 2 1 3 18 18 O 1.21579 * 119.99989 * 184.66896 * 17 2 1 19 19 C 1.47552 * 119.99960 * 4.67430 * 17 2 1 20 20 C 1.38914 * 120.29528 * 326.88862 * 19 17 2 21 21 C 1.40558 * 118.06940 * 179.72675 * 20 19 17 22 22 C 1.40542 * 121.13709 * 180.02562 * 21 20 19 23 23 C 1.36151 * 119.63955 * 179.97438 * 22 21 20 24 24 C 1.39335 * 120.83222 * 359.97438 * 23 22 21 25 25 C 1.36138 * 121.07795 * 0.02562 * 24 23 22 26 26 C 1.40534 * 119.82312 * 359.97438 * 25 24 23 27 27 N 1.33821 * 120.73476 * 180.02562 * 26 25 24 28 28 C 1.31379 * 121.65912 * 179.97438 * 27 26 25 29 29 O 1.35414 * 119.31533 * 180.02562 * 28 27 26 30 30 H 1.08998 * 109.47459 * 275.78310 * 1 2 3 31 31 H 1.09005 * 109.46974 * 35.78412 * 1 2 3 32 32 H 1.09006 * 109.46821 * 155.78025 * 1 2 3 33 33 H 1.09001 * 109.47525 * 24.56947 * 3 2 1 34 34 H 1.08999 * 109.47307 * 144.56938 * 3 2 1 35 35 H 1.08995 * 113.74305 * 252.24987 * 6 4 3 36 36 H 1.09005 * 113.74280 * 23.45753 * 6 4 3 37 37 H 1.08998 * 113.77373 * 90.69081 * 7 6 4 38 38 H 1.09001 * 113.77255 * 221.97918 * 7 6 4 39 39 H 0.97006 * 119.99751 * 180.02562 * 12 11 9 40 40 H 1.07994 * 120.96657 * 359.70278 * 20 19 17 41 41 H 1.07994 * 120.17572 * 0.02562 * 22 21 20 42 42 H 1.08000 * 119.58374 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.45551 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.08726 * 180.02562 * 25 24 23 45 45 H 0.96698 * 113.99756 * 269.99790 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5707 1.6421 -1.4361 5 1 3.2808 0.9478 -1.8852 6 6 1.3578 1.9546 -2.3311 7 6 2.1904 3.1281 -2.8783 8 7 2.9384 3.0613 -1.6052 9 6 3.6754 3.9553 -0.8753 10 1 4.1971 3.6281 0.0119 11 6 3.7519 5.2823 -1.2756 12 7 3.1164 5.6810 -2.3570 13 14 4.7577 6.5016 -0.2803 14 1 6.1741 6.0574 -0.2383 15 1 4.6776 7.8426 -0.9131 16 1 4.2206 6.5745 1.1023 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1689 0.0862 19 6 1.4048 -2.4430 -0.1030 20 6 0.1413 -2.5721 0.4597 21 6 -0.5183 -3.8064 0.3282 22 6 -1.7985 -4.0078 0.8720 23 6 -2.4096 -5.2157 0.7261 24 6 -1.7820 -6.2557 0.0436 25 6 -0.5423 -6.0953 -0.4957 26 6 0.1219 -4.8635 -0.3667 27 7 1.3406 -4.6856 -0.8900 28 6 1.9777 -3.5418 -0.7807 29 8 3.2092 -3.4138 -1.3290 30 1 -0.3634 0.1035 1.0224 31 1 -0.3633 0.8337 -0.6009 32 1 -0.3633 -0.9373 -0.4216 33 1 1.5698 2.0507 0.4273 34 1 3.1043 1.1647 0.5957 35 1 1.1481 1.1826 -3.0713 36 1 0.4715 2.2640 -1.7769 37 1 2.7898 2.8719 -3.7519 38 1 1.6205 4.0481 -3.0087 39 1 3.1702 6.6082 -2.6370 40 1 -0.3206 -1.7483 0.9833 41 1 -2.2950 -3.2085 1.4019 42 1 -3.3935 -5.3693 1.1440 43 1 -2.2870 -7.2049 -0.0586 44 1 -0.0709 -6.9121 -1.0219 45 1 3.9320 -3.6523 -0.7326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085751504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 66.467202 kcal Electronic energy + Delta-G solvation = -29311.270458 eV Core-core repulsion = 25297.240348 eV Total energy + Delta-G solvation = -4014.030110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49511 -39.75011 -38.44874 -37.63226 -36.20462 -35.31119 -33.86879 -32.12318 -30.92682 -30.09109 -28.51022 -27.82828 -26.81353 -24.65420 -24.05528 -23.32244 -22.72163 -22.24798 -20.04404 -19.47080 -18.97741 -18.32192 -17.42850 -16.87597 -16.50530 -16.16785 -15.85532 -15.63043 -15.15268 -14.84627 -14.66893 -14.55106 -14.22886 -13.94345 -13.87982 -13.57831 -13.40970 -12.95953 -12.44800 -12.31813 -12.28186 -12.09674 -11.93590 -11.73455 -11.66216 -11.39448 -11.09078 -10.90556 -10.69446 -10.64981 -10.47052 -10.21027 -9.81006 -9.73789 -9.63432 -9.47224 -9.03509 -8.74292 -8.62088 -8.41051 -6.83310 -5.71975 -3.05435 -0.13539 0.25700 1.49090 2.22767 2.83053 3.11635 3.32418 3.41857 3.46389 3.47390 3.69570 4.03804 4.16129 4.28406 4.41187 4.49341 4.61874 4.70574 4.83901 4.94290 5.00110 5.19189 5.25151 5.29450 5.31844 5.43267 5.47393 5.56578 5.59528 5.64032 5.82048 5.89094 5.97041 5.97633 6.01667 6.19003 6.26628 6.36619 6.43412 6.57775 6.73105 6.82791 7.28137 7.31032 7.41601 7.49817 7.59179 7.62749 8.03037 8.20010 9.08611 9.75215 10.65196 11.44183 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002472 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.409536 B =11325.224264 C =11688.043625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.597 5.597 3 C 0.120 3.880 4 C 0.131 3.869 5 H 0.049 0.951 6 C -0.159 4.159 7 C 0.156 3.844 8 N -0.602 5.602 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.563 3.437 18 O -0.522 6.522 19 C -0.193 4.193 20 C -0.018 4.018 21 C -0.124 4.124 22 C -0.082 4.082 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.102 4.102 26 C 0.166 3.834 27 N -0.502 5.502 28 C 0.395 3.605 29 O -0.467 6.467 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.023 0.977 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 -22.963 7.214 28.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.330 5.330 3 C -0.003 4.003 4 C 0.023 3.977 5 H 0.066 0.934 6 C -0.197 4.197 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.349 3.651 18 O -0.398 6.398 19 C -0.199 4.199 20 C -0.044 4.044 21 C -0.126 4.126 22 C -0.101 4.101 23 C -0.143 4.143 24 C -0.109 4.109 25 C -0.120 4.120 26 C 0.044 3.956 27 N -0.221 5.221 28 C 0.201 3.799 29 O -0.275 6.275 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.181 0.819 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.746 -23.122 6.393 27.649 hybrid contribution 0.578 1.243 1.089 1.750 sum -13.168 -21.879 7.482 26.610 Atomic orbital electron populations 1.22485 0.80363 1.04082 1.01697 1.47692 1.06726 1.06261 1.72292 1.21851 0.96928 0.82159 0.99375 1.22523 0.93861 0.88647 0.92713 0.93404 1.23759 0.97423 0.99437 0.99069 1.22297 0.90742 0.95623 0.88230 1.46055 1.60632 1.04382 1.21747 1.18974 1.22760 0.88063 1.05099 0.90460 1.24771 1.00783 0.96848 0.98006 1.69815 1.46220 1.16005 1.24790 0.86222 0.79934 0.80527 0.79211 1.21209 1.21617 1.21113 1.17787 0.87048 0.82823 0.77425 1.90790 1.13103 1.86841 1.49082 1.21164 0.97269 0.97060 1.04446 1.22543 0.91683 0.96458 0.93689 1.18808 0.96870 0.94376 1.02548 1.21039 0.92965 0.98071 0.98014 1.20941 1.00541 0.93199 0.99611 1.20987 0.94508 0.99352 0.96020 1.20838 0.94840 0.95840 1.00524 1.18685 0.89381 0.93874 0.93665 1.67556 1.09575 1.23983 1.20998 1.19127 0.87524 0.86435 0.86852 1.84663 1.12421 1.88467 1.41931 0.92063 0.90058 0.90245 0.89533 0.90338 0.93431 0.90984 0.95922 0.90410 0.93688 0.81922 0.84787 0.85222 0.85049 0.84452 0.72774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 8.65 59.85 0.52 1.09 16 2 N -0.60 -8.69 2.78 -182.80 -0.51 -9.20 16 3 C 0.12 2.16 5.32 -4.04 -0.02 2.14 16 4 C 0.13 2.77 4.53 -66.86 -0.30 2.47 16 5 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.16 -3.05 7.18 -25.79 -0.19 -3.23 16 7 C 0.16 3.77 7.64 -2.85 -0.02 3.75 16 8 N -0.60 -15.60 3.58 -169.72 -0.61 -16.20 16 9 C -0.22 -6.24 10.51 -15.06 -0.16 -6.40 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -27.50 11.32 55.49 0.63 -26.88 16 13 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.56 8.82 7.26 -12.46 -0.09 8.73 16 18 O -0.52 -9.92 15.49 -13.23 -0.20 -10.12 16 19 C -0.19 -2.50 5.47 -104.71 -0.57 -3.07 16 20 C -0.02 -0.17 7.25 -38.46 -0.28 -0.45 16 21 C -0.12 -1.17 5.74 -106.80 -0.61 -1.78 16 22 C -0.08 -0.54 9.77 -39.46 -0.39 -0.93 16 23 C -0.12 -0.70 9.96 -39.92 -0.40 -1.10 16 24 C -0.09 -0.54 9.94 -39.93 -0.40 -0.94 16 25 C -0.10 -0.87 9.97 -39.47 -0.39 -1.26 16 26 C 0.17 1.84 6.61 -84.78 -0.56 1.28 16 27 N -0.50 -6.66 10.33 -10.76 -0.11 -6.78 16 28 C 0.40 5.47 7.71 -16.61 -0.13 5.34 16 29 O -0.47 -6.60 12.11 -36.46 -0.44 -7.04 16 30 H 0.06 0.46 7.53 -51.93 -0.39 0.07 16 31 H 0.08 0.84 6.45 -51.93 -0.33 0.50 16 32 H 0.08 0.69 4.65 -51.93 -0.24 0.45 16 33 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 34 H 0.08 1.56 7.53 -51.93 -0.39 1.17 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.27 6.91 -51.93 -0.36 0.91 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 2.04 6.97 -51.93 -0.36 1.68 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.16 1.13 5.03 -52.49 -0.26 0.87 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 43 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.41 4.23 9.06 45.56 0.41 4.64 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -36.03 370.46 -9.63 -45.66 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.85 Total: 2.30 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -4.09 Total: 5.32 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.60 Total: -59.05 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.65 Total: -17.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.03 -9.63 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085751504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.124 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds