Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00058 * 2 1 4 4 C 1.53006 * 109.47010 * 264.56820 * 3 2 1 5 5 H 1.08990 * 112.96721 * 294.21026 * 4 3 2 6 6 C 1.53948 * 113.76572 * 65.89070 * 4 3 2 7 7 C 1.53944 * 86.28905 * 137.90668 * 6 4 3 8 8 N 1.47580 * 113.76796 * 162.53062 * 4 3 2 9 9 C 1.36938 * 134.49252 * 41.07370 * 8 4 3 10 10 H 1.08001 * 120.00340 * 4.75013 * 9 8 4 11 11 C 1.38815 * 120.00297 * 184.75532 * 9 8 4 12 12 N 1.31621 * 119.99479 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00352 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47163 * 59.99660 * 13 11 9 15 15 H 1.48496 * 109.47152 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47074 * 299.99456 * 13 11 9 17 17 C 1.34782 * 120.00002 * 179.97438 * 2 1 3 18 18 O 1.21579 * 119.99989 * 184.66896 * 17 2 1 19 19 C 1.47552 * 119.99960 * 4.67430 * 17 2 1 20 20 C 1.38914 * 120.29528 * 326.88862 * 19 17 2 21 21 C 1.40558 * 118.06940 * 179.72675 * 20 19 17 22 22 C 1.40542 * 121.13709 * 180.02562 * 21 20 19 23 23 C 1.36151 * 119.63955 * 179.97438 * 22 21 20 24 24 C 1.39335 * 120.83222 * 359.97438 * 23 22 21 25 25 C 1.36138 * 121.07795 * 0.02562 * 24 23 22 26 26 C 1.40534 * 119.82312 * 359.97438 * 25 24 23 27 27 N 1.33821 * 120.73476 * 180.02562 * 26 25 24 28 28 C 1.31379 * 121.65912 * 179.97438 * 27 26 25 29 29 O 1.35414 * 119.31533 * 180.02562 * 28 27 26 30 30 H 1.08998 * 109.47459 * 275.78310 * 1 2 3 31 31 H 1.09005 * 109.46974 * 35.78412 * 1 2 3 32 32 H 1.09006 * 109.46821 * 155.78025 * 1 2 3 33 33 H 1.09001 * 109.47525 * 24.56947 * 3 2 1 34 34 H 1.08999 * 109.47307 * 144.56938 * 3 2 1 35 35 H 1.08995 * 113.74305 * 252.24987 * 6 4 3 36 36 H 1.09005 * 113.74280 * 23.45753 * 6 4 3 37 37 H 1.08998 * 113.77373 * 90.69081 * 7 6 4 38 38 H 1.09001 * 113.77255 * 221.97918 * 7 6 4 39 39 H 0.97006 * 119.99751 * 180.02562 * 12 11 9 40 40 H 1.07994 * 120.96657 * 359.70278 * 20 19 17 41 41 H 1.07994 * 120.17572 * 0.02562 * 22 21 20 42 42 H 1.08000 * 119.58374 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.45551 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.08726 * 180.02562 * 25 24 23 45 45 H 0.96698 * 113.99756 * 269.99790 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5707 1.6421 -1.4361 5 1 3.2808 0.9478 -1.8852 6 6 1.3578 1.9546 -2.3311 7 6 2.1904 3.1281 -2.8783 8 7 2.9384 3.0613 -1.6052 9 6 3.6754 3.9553 -0.8753 10 1 4.1971 3.6281 0.0119 11 6 3.7519 5.2823 -1.2756 12 7 3.1164 5.6810 -2.3570 13 14 4.7577 6.5016 -0.2803 14 1 6.1741 6.0574 -0.2383 15 1 4.6776 7.8426 -0.9131 16 1 4.2206 6.5745 1.1023 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1689 0.0862 19 6 1.4048 -2.4430 -0.1030 20 6 0.1413 -2.5721 0.4597 21 6 -0.5183 -3.8064 0.3282 22 6 -1.7985 -4.0078 0.8720 23 6 -2.4096 -5.2157 0.7261 24 6 -1.7820 -6.2557 0.0436 25 6 -0.5423 -6.0953 -0.4957 26 6 0.1219 -4.8635 -0.3667 27 7 1.3406 -4.6856 -0.8900 28 6 1.9777 -3.5418 -0.7807 29 8 3.2092 -3.4138 -1.3290 30 1 -0.3634 0.1035 1.0224 31 1 -0.3633 0.8337 -0.6009 32 1 -0.3633 -0.9373 -0.4216 33 1 1.5698 2.0507 0.4273 34 1 3.1043 1.1647 0.5957 35 1 1.1481 1.1826 -3.0713 36 1 0.4715 2.2640 -1.7769 37 1 2.7898 2.8719 -3.7519 38 1 1.6205 4.0481 -3.0087 39 1 3.1702 6.6082 -2.6370 40 1 -0.3206 -1.7483 0.9833 41 1 -2.2950 -3.2085 1.4019 42 1 -3.3935 -5.3693 1.1440 43 1 -2.2870 -7.2049 -0.0586 44 1 -0.0709 -6.9121 -1.0219 45 1 3.9320 -3.6523 -0.7326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085751504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 40.278848 kcal Electronic energy + Delta-G solvation = -29312.406070 eV Core-core repulsion = 25297.240348 eV Total energy + Delta-G solvation = -4015.165723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.33296 -40.85670 -39.63703 -39.02825 -37.07279 -36.43166 -34.76550 -34.16324 -31.74670 -30.75607 -29.87177 -29.74069 -27.83803 -25.56578 -25.35152 -24.89411 -23.91669 -23.12219 -21.22631 -20.78810 -20.26005 -19.15580 -18.74228 -18.29936 -17.60536 -17.18025 -16.97484 -16.86397 -16.50036 -15.97991 -15.87192 -15.44094 -15.39551 -15.22752 -14.87823 -14.67296 -14.38110 -14.16443 -13.93771 -13.86486 -13.37722 -13.08581 -13.03908 -12.82755 -12.60146 -12.57027 -12.47109 -12.42039 -12.35349 -12.31332 -11.80224 -11.60684 -11.52200 -11.37510 -11.20748 -10.83481 -10.49986 -9.83296 -9.64560 -9.24615 -8.91189 -7.88872 -5.24112 -0.82845 -0.50499 0.84579 1.40684 1.44500 1.48292 1.54060 1.74247 2.10313 2.47410 2.51811 2.99049 3.18793 3.29813 3.41751 3.50484 3.54329 3.78239 3.84283 3.94900 4.14657 4.19986 4.23750 4.26761 4.32718 4.36070 4.49421 4.59031 4.60570 4.64387 4.75253 4.82755 4.88102 4.94706 4.98263 5.04674 5.06899 5.21416 5.31747 5.38692 5.40611 5.50458 5.55765 5.69543 5.86549 5.94862 6.29748 6.44986 6.75782 6.92363 7.03880 7.61127 8.57266 9.26833 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002472 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.409536 B =11325.224264 C =11688.043625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.595 5.595 3 C 0.138 3.862 4 C 0.130 3.870 5 H 0.021 0.979 6 C -0.122 4.122 7 C 0.147 3.853 8 N -0.627 5.627 9 C -0.232 4.232 10 H 0.078 0.922 11 C -0.064 4.064 12 N -0.952 5.952 13 Si 0.977 3.023 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.271 1.271 17 C 0.561 3.439 18 O -0.570 6.570 19 C -0.218 4.218 20 C 0.008 3.992 21 C -0.134 4.134 22 C -0.078 4.078 23 C -0.119 4.119 24 C -0.069 4.069 25 C -0.129 4.129 26 C 0.140 3.860 27 N -0.526 5.526 28 C 0.372 3.628 29 O -0.489 6.489 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.006 0.994 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.197 0.803 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.136 0.864 45 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.807 -24.309 9.422 32.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.326 5.326 3 C 0.014 3.986 4 C 0.023 3.977 5 H 0.038 0.962 6 C -0.160 4.160 7 C 0.021 3.979 8 N -0.354 5.354 9 C -0.361 4.361 10 H 0.095 0.905 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.805 3.195 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.196 1.196 17 C 0.349 3.651 18 O -0.450 6.450 19 C -0.225 4.225 20 C -0.017 4.017 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.137 4.137 24 C -0.089 4.089 25 C -0.148 4.148 26 C 0.019 3.981 27 N -0.246 5.246 28 C 0.178 3.822 29 O -0.299 6.299 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.213 0.787 41 H 0.188 0.812 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.154 0.846 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -17.964 -24.514 8.618 31.590 hybrid contribution 1.717 1.438 0.407 2.277 sum -16.247 -23.076 9.026 29.630 Atomic orbital electron populations 1.22857 0.77101 1.05119 1.04323 1.47682 1.08578 1.04514 1.71853 1.21358 0.96709 0.84141 0.96408 1.22563 0.94047 0.85884 0.95239 0.96156 1.23513 0.96731 0.97318 0.98474 1.22285 0.91316 0.96714 0.87543 1.46455 1.60489 1.06121 1.22312 1.19312 1.22635 0.88868 1.05251 0.90468 1.25597 1.02278 0.98601 0.99270 1.70001 1.47728 1.15942 1.26361 0.85183 0.78275 0.77790 0.78270 1.21099 1.21844 1.19624 1.18231 0.86683 0.83880 0.76292 1.90754 1.15359 1.87620 1.51233 1.20829 0.98880 0.95383 1.07374 1.22878 0.89909 0.97406 0.91540 1.19046 0.98186 0.93651 1.02763 1.21465 0.91410 0.99612 0.97132 1.21443 1.01722 0.92323 0.98170 1.21442 0.93081 1.00869 0.93503 1.21004 0.96227 0.95237 1.02319 1.19187 0.89055 0.95583 0.94239 1.67512 1.11055 1.23949 1.22052 1.19279 0.87423 0.87280 0.88228 1.84609 1.13425 1.88786 1.43082 0.88369 0.89765 0.88611 0.88604 0.92879 0.90991 0.88443 0.97652 0.92697 0.94234 0.78657 0.81249 0.81569 0.81955 0.84574 0.71950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 8.65 127.77 1.11 1.86 16 2 N -0.59 -16.61 2.78 -850.52 -2.37 -18.97 16 3 C 0.14 4.98 5.32 86.38 0.46 5.44 16 4 C 0.13 5.61 4.53 45.10 0.20 5.81 16 5 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 6 C -0.12 -4.58 7.18 31.25 0.22 -4.36 16 7 C 0.15 7.26 7.64 86.44 0.66 7.92 16 8 N -0.63 -33.31 3.58 -690.88 -2.48 -35.78 16 9 C -0.23 -13.39 10.51 84.03 0.88 -12.50 16 10 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 11 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 12 N -0.95 -58.21 11.32 21.65 0.25 -57.97 16 13 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 C 0.56 17.83 7.26 86.70 0.63 18.46 16 18 O -0.57 -23.00 15.49 13.75 0.21 -22.79 16 19 C -0.22 -5.62 5.47 -19.92 -0.11 -5.73 16 20 C 0.01 0.13 7.25 23.00 0.17 0.30 16 21 C -0.13 -2.14 5.74 -21.28 -0.12 -2.27 16 22 C -0.08 -0.61 9.77 22.35 0.22 -0.40 16 23 C -0.12 -0.67 9.96 22.05 0.22 -0.45 16 24 C -0.07 -0.56 9.94 22.04 0.22 -0.34 16 25 C -0.13 -1.99 9.97 22.34 0.22 -1.77 16 26 C 0.14 2.99 6.61 40.28 0.27 3.26 16 27 N -0.53 -14.48 10.33 -301.40 -3.11 -17.59 16 28 C 0.37 10.85 7.71 85.50 0.66 11.51 16 29 O -0.49 -15.24 12.11 -69.37 -0.84 -16.08 16 30 H 0.10 0.93 7.53 -2.39 -0.02 0.91 16 31 H 0.08 1.38 6.45 -2.38 -0.02 1.36 16 32 H 0.10 1.27 4.65 -2.38 -0.01 1.26 16 33 H 0.10 3.28 8.03 -2.39 -0.02 3.26 16 34 H 0.05 2.18 7.53 -2.39 -0.02 2.16 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.10 3.18 6.91 -2.38 -0.02 3.16 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.05 2.96 6.97 -2.39 -0.02 2.94 16 39 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 40 H 0.20 1.77 5.03 -2.91 -0.01 1.76 16 41 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 42 H 0.17 -0.17 8.06 -2.91 -0.02 -0.19 16 43 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 44 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.42 10.11 9.06 -74.06 -0.67 9.44 16 Total: -1.00 -84.58 370.46 0.44 -84.15 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.38 Total: 12.89 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 6.37 Total: 23.46 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -7.71 Total: -130.31 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.63 Total: -38.87 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -84.58 0.44 -84.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085751504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.424 kcal (2) G-P(sol) polarization free energy of solvation -84.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds