Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00230 * 2 1 4 4 C 1.53001 * 109.47051 * 276.15273 * 3 2 1 5 5 H 1.09009 * 113.03903 * 69.62571 * 4 3 2 6 6 C 1.53945 * 113.77259 * 297.87566 * 4 3 2 7 7 C 1.53948 * 86.28681 * 222.09149 * 6 4 3 8 8 N 1.47576 * 86.24177 * 23.54712 * 7 6 4 9 9 C 1.36940 * 134.49007 * 155.42925 * 8 7 6 10 10 H 1.08000 * 119.99868 * 186.03315 * 9 8 7 11 11 C 1.38812 * 120.00196 * 6.02673 * 9 8 7 12 12 N 1.31618 * 119.99896 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00073 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46935 * 60.00454 * 13 11 9 15 15 H 1.48505 * 109.47197 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47474 * 300.00381 * 13 11 9 17 17 C 1.34777 * 119.99391 * 179.97438 * 2 1 3 18 18 O 1.21588 * 119.99410 * 175.66197 * 17 2 1 19 19 C 1.47550 * 120.00646 * 355.66489 * 17 2 1 20 20 C 1.38910 * 120.29735 * 47.69034 * 19 17 2 21 21 C 1.40555 * 118.06589 * 180.02562 * 20 19 17 22 22 C 1.40545 * 121.12724 * 180.02562 * 21 20 19 23 23 C 1.36146 * 119.63779 * 180.02562 * 22 21 20 24 24 C 1.39328 * 120.83366 * 359.90773 * 23 22 21 25 25 C 1.36137 * 121.07797 * 0.07301 * 24 23 22 26 26 C 1.40531 * 119.82281 * 359.97398 * 25 24 23 27 27 N 1.33823 * 120.74292 * 180.02562 * 26 25 24 28 28 C 1.31381 * 121.66341 * 179.71571 * 27 26 25 29 29 O 1.35410 * 119.31743 * 180.28713 * 28 27 26 30 30 H 1.09005 * 109.47004 * 95.09799 * 1 2 3 31 31 H 1.08997 * 109.47776 * 215.10052 * 1 2 3 32 32 H 1.09004 * 109.47178 * 335.10362 * 1 2 3 33 33 H 1.08999 * 109.47364 * 156.15619 * 3 2 1 34 34 H 1.09006 * 109.46916 * 36.15366 * 3 2 1 35 35 H 1.08990 * 113.74246 * 107.74155 * 6 4 3 36 36 H 1.09003 * 113.83471 * 336.44521 * 6 4 3 37 37 H 1.09005 * 113.76617 * 137.90655 * 7 6 4 38 38 H 1.08997 * 113.76438 * 269.18830 * 7 6 4 39 39 H 0.96995 * 120.00057 * 179.97438 * 12 11 9 40 40 H 1.08003 * 120.96301 * 0.03826 * 20 19 17 41 41 H 1.08001 * 120.18224 * 359.95298 * 22 21 20 42 42 H 1.08005 * 119.58347 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.46185 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.08918 * 179.97438 * 25 24 23 45 45 H 0.96703 * 114.00380 * 270.26238 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3186 1.7876 -1.4342 5 1 1.3673 2.1209 -1.8491 6 6 3.1091 0.8529 -2.3677 7 6 3.7706 2.1285 -2.9204 8 7 3.4214 2.7522 -1.6293 9 6 3.9200 3.8017 -0.9046 10 1 3.5370 4.0052 0.0845 11 6 4.9176 4.6040 -1.4412 12 7 5.3841 4.3562 -2.6467 13 14 5.5982 6.0352 -0.4523 14 1 6.1879 5.5270 0.8123 15 1 6.6464 6.7291 -1.2429 16 1 4.5018 6.9868 -0.1399 17 6 2.1387 -1.1673 0.0005 18 8 3.3520 -1.1688 -0.0791 19 6 1.4042 -2.4432 0.0977 20 6 0.2990 -2.6789 -0.7102 21 6 -0.3660 -3.9101 -0.5784 22 6 -1.4906 -4.2161 -1.3638 23 6 -2.1119 -5.4179 -1.2107 24 6 -1.6459 -6.3500 -0.2860 25 6 -0.5592 -6.0867 0.4907 26 6 0.1093 -4.8572 0.3634 27 7 1.1796 -4.5793 1.1171 28 6 1.8216 -3.4381 1.0092 29 8 2.9027 -3.2089 1.7917 30 1 -0.3633 -0.0913 -1.0236 31 1 -0.3634 -0.8407 0.5909 32 1 -0.3634 0.9322 0.4326 33 1 3.1932 1.1134 0.4154 34 1 1.6606 1.9982 0.6063 35 1 2.4875 0.3305 -3.0947 36 1 3.8003 0.1909 -1.8460 37 1 4.8436 2.0308 -3.0852 38 1 3.2469 2.5607 -3.7730 39 1 6.0809 4.9170 -3.0218 40 1 -0.0392 -1.9376 -1.4192 41 1 -1.8607 -3.5015 -2.0840 42 1 -2.9764 -5.6520 -1.8144 43 1 -2.1555 -7.2967 -0.1831 44 1 -0.2119 -6.8207 1.2027 45 1 2.6937 -2.7936 2.6396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085751505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 56.155329 kcal Electronic energy + Delta-G solvation = -29385.687232 eV Core-core repulsion = 25371.209965 eV Total energy + Delta-G solvation = -4014.477267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.43885 -39.74563 -38.47554 -37.51406 -36.14021 -35.28670 -33.85758 -32.11485 -30.88987 -30.08754 -28.43778 -27.76948 -26.70628 -24.75288 -24.05733 -23.22843 -22.71028 -22.23492 -20.07913 -19.31590 -18.92935 -18.34242 -17.56735 -16.68184 -16.48814 -16.37564 -16.00507 -15.42854 -15.13803 -14.74700 -14.73829 -14.46899 -14.04380 -13.95200 -13.88742 -13.52098 -13.38635 -12.84282 -12.66784 -12.37232 -12.31405 -12.05520 -11.92719 -11.76081 -11.71071 -11.34730 -11.00667 -10.94936 -10.77822 -10.65155 -10.43445 -10.12760 -9.84075 -9.69052 -9.59329 -9.39589 -9.00211 -8.74470 -8.62775 -8.38751 -6.80627 -5.71010 -3.02867 -0.10549 0.26978 1.51921 2.26099 2.83710 3.01660 3.28223 3.42730 3.46671 3.48181 3.66337 4.08453 4.18447 4.30851 4.42639 4.50876 4.63112 4.72095 4.83744 4.96439 4.98879 5.22651 5.26582 5.34375 5.36621 5.42757 5.50365 5.54591 5.59281 5.61047 5.89127 5.90352 5.94891 5.98465 6.02451 6.11986 6.36404 6.39121 6.56316 6.68391 6.78674 6.84578 7.23185 7.32522 7.42928 7.54517 7.57790 7.66302 8.04388 8.26860 9.09998 9.76731 10.68060 11.46690 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.002520 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.668864 B =11108.119530 C =11602.981497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.117 3.883 4 C 0.128 3.872 5 H 0.041 0.959 6 C -0.161 4.161 7 C 0.166 3.834 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.077 0.923 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.557 3.443 18 O -0.498 6.498 19 C -0.185 4.185 20 C -0.009 4.009 21 C -0.119 4.119 22 C -0.082 4.082 23 C -0.124 4.124 24 C -0.090 4.090 25 C -0.101 4.101 26 C 0.163 3.837 27 N -0.499 5.499 28 C 0.388 3.612 29 O -0.463 6.463 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.254 0.746 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 -19.901 5.321 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.337 5.337 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.199 4.199 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.343 3.657 18 O -0.372 6.372 19 C -0.192 4.192 20 C -0.035 4.035 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.142 4.142 24 C -0.110 4.110 25 C -0.120 4.120 26 C 0.041 3.959 27 N -0.219 5.219 28 C 0.194 3.806 29 O -0.270 6.270 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -18.170 -20.473 5.485 27.917 hybrid contribution -0.256 1.792 0.187 1.820 sum -18.425 -18.681 5.672 26.845 Atomic orbital electron populations 1.21966 0.80240 1.03190 1.01528 1.47729 1.06586 1.06235 1.73145 1.21907 0.97814 0.81908 0.98986 1.22557 0.92624 0.90103 0.92762 0.94145 1.23855 0.99673 0.97782 0.98581 1.22084 0.99288 0.86465 0.88131 1.45980 1.31804 1.34493 1.20343 1.18917 1.15765 1.03592 0.96827 0.90474 1.24802 0.99829 0.99172 0.96569 1.69828 1.30785 1.40502 1.15518 0.86241 0.78432 0.82290 0.79028 1.21072 1.21607 1.21256 1.17803 0.87193 0.82719 0.78015 1.90882 1.12865 1.86339 1.47066 1.21124 0.98345 0.97187 1.02563 1.22088 0.90831 0.95501 0.95060 1.18781 0.98604 0.95264 0.99496 1.21052 0.93766 0.97481 0.97813 1.20944 1.00499 0.93882 0.98883 1.20979 0.95656 0.99567 0.94766 1.20825 0.95556 0.95177 1.00419 1.18651 0.91122 0.94337 0.91766 1.67519 1.07705 1.20135 1.26505 1.19119 0.84749 0.86860 0.89919 1.84806 1.26507 1.82641 1.33076 0.92458 0.91685 0.90448 0.88673 0.91290 0.94111 0.89363 0.91703 0.95700 0.93631 0.82861 0.84769 0.85224 0.85064 0.84477 0.73724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.08 59.85 0.54 1.23 16 2 N -0.60 -8.39 2.75 -182.80 -0.50 -8.90 16 3 C 0.12 2.05 5.45 -4.04 -0.02 2.02 16 4 C 0.13 2.60 4.60 -66.74 -0.31 2.30 16 5 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 6 C -0.16 -3.35 7.21 -25.79 -0.19 -3.53 16 7 C 0.17 4.14 7.36 -2.98 -0.02 4.12 16 8 N -0.60 -15.64 3.58 -169.74 -0.61 -16.25 16 9 C -0.22 -6.30 10.52 -15.06 -0.16 -6.46 16 10 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -28.06 11.55 55.49 0.64 -27.42 16 13 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.56 8.66 6.55 -12.46 -0.08 8.58 16 18 O -0.50 -10.02 14.13 -5.98 -0.08 -10.11 16 19 C -0.19 -2.38 4.96 -104.71 -0.52 -2.90 16 20 C -0.01 -0.09 7.61 -38.46 -0.29 -0.38 16 21 C -0.12 -1.14 5.74 -106.80 -0.61 -1.76 16 22 C -0.08 -0.57 9.77 -39.46 -0.39 -0.95 16 23 C -0.12 -0.72 9.96 -39.93 -0.40 -1.12 16 24 C -0.09 -0.55 9.94 -39.93 -0.40 -0.95 16 25 C -0.10 -0.86 9.97 -39.47 -0.39 -1.25 16 26 C 0.16 1.80 6.61 -84.78 -0.56 1.24 16 27 N -0.50 -6.50 10.33 -10.76 -0.11 -6.62 16 28 C 0.39 5.21 7.72 -16.60 -0.13 5.08 16 29 O -0.46 -6.20 12.52 -29.19 -0.37 -6.57 16 30 H 0.06 0.45 7.04 -51.93 -0.37 0.08 16 31 H 0.06 0.50 6.24 -51.93 -0.32 0.18 16 32 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 33 H 0.09 1.98 7.30 -51.93 -0.38 1.60 16 34 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 2.00 6.27 -51.93 -0.33 1.68 16 37 H 0.06 1.79 7.45 -51.93 -0.39 1.41 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.15 1.20 6.23 -52.48 -0.33 0.87 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.40 3.34 9.06 45.56 0.41 3.75 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -37.14 372.52 -9.48 -46.62 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.02 Total: 1.17 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -4.02 Total: 4.97 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.58 Total: -59.18 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.45 Total: -16.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.14 -9.48 -46.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085751505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.777 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds