Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99873 * 2 1 4 4 C 1.52996 * 109.47157 * 284.15958 * 3 2 1 5 5 H 1.09000 * 112.96718 * 44.16391 * 4 3 2 6 6 C 1.53948 * 113.77128 * 175.84748 * 4 3 2 7 7 C 1.53942 * 86.29078 * 137.90525 * 6 4 3 8 8 N 1.47579 * 113.76852 * 272.34046 * 4 3 2 9 9 C 1.36939 * 134.49319 * 41.05927 * 8 4 3 10 10 H 1.07998 * 120.00227 * 7.19697 * 9 8 4 11 11 C 1.38813 * 120.00146 * 187.20280 * 9 8 4 12 12 N 1.31618 * 119.99956 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99872 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47464 * 89.99528 * 13 11 9 15 15 H 1.48506 * 109.46662 * 209.99809 * 13 11 9 16 16 H 1.48497 * 109.47201 * 329.99053 * 13 11 9 17 17 C 1.34778 * 120.00156 * 180.02562 * 2 1 3 18 18 O 1.21639 * 119.99933 * 186.03633 * 17 2 1 19 19 C 1.47144 * 119.99920 * 6.03814 * 17 2 1 20 20 C 1.39031 * 121.09929 * 327.34586 * 19 17 2 21 21 N 1.32072 * 121.40827 * 180.02562 * 20 19 17 22 22 C 1.31828 * 123.59921 * 0.02562 * 21 20 19 23 23 O 1.35259 * 119.60855 * 179.97438 * 22 21 20 24 24 C 1.41170 * 120.77980 * 0.25916 * 22 21 20 25 25 C 1.40128 * 122.12006 * 180.28111 * 24 22 21 26 26 C 1.36352 * 119.51510 * 179.68173 * 25 24 22 27 27 C 1.39190 * 121.05322 * 359.75322 * 26 25 24 28 28 C 1.36513 * 120.89193 * 359.97438 * 27 26 25 29 29 C 1.39620 * 119.43598 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.47028 * 276.90924 * 1 2 3 31 31 H 1.09000 * 109.47356 * 36.91206 * 1 2 3 32 32 H 1.08993 * 109.47225 * 156.91371 * 1 2 3 33 33 H 1.09000 * 109.47063 * 44.15548 * 3 2 1 34 34 H 1.09001 * 109.47189 * 164.15687 * 3 2 1 35 35 H 1.08997 * 113.74190 * 252.25092 * 6 4 3 36 36 H 1.08997 * 113.74057 * 23.45251 * 6 4 3 37 37 H 1.09003 * 113.76846 * 90.69500 * 7 6 4 38 38 H 1.09007 * 113.76968 * 221.97997 * 7 6 4 39 39 H 0.97004 * 119.99891 * 179.97438 * 12 11 9 40 40 H 1.08003 * 119.29877 * 0.02562 * 20 19 17 41 41 H 0.96706 * 113.99910 * 90.00790 * 23 22 21 42 42 H 1.08003 * 120.23989 * 359.43304 * 25 24 22 43 43 H 1.07991 * 119.47326 * 179.76961 * 26 25 24 44 44 H 1.08002 * 119.55057 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.28022 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1469 1.8869 -1.3986 5 1 1.1555 1.8392 -1.8491 6 6 2.8023 3.2771 -1.4868 7 6 3.4079 2.7969 -2.8182 8 7 3.2305 1.4302 -2.2903 9 6 3.8306 0.2230 -2.5312 10 1 3.4329 -0.6763 -2.0847 11 6 4.9500 0.1553 -3.3493 12 7 5.4344 1.2513 -3.8938 13 14 5.7680 -1.4915 -3.6785 14 1 5.1587 -2.1155 -4.8804 15 1 7.2203 -1.2852 -3.9101 16 1 5.5754 -2.3829 -2.5065 17 6 2.1389 -1.1672 -0.0005 18 8 3.3503 -1.1701 0.1103 19 6 1.4094 -2.4379 -0.1351 20 6 0.1291 -2.5896 0.3854 21 7 -0.5310 -3.7275 0.2686 22 6 -0.0460 -4.7935 -0.3366 23 8 -0.7931 -5.9187 -0.4092 24 6 1.2463 -4.7764 -0.9046 25 6 1.7873 -5.8910 -1.5591 26 6 3.0390 -5.8138 -2.0943 27 6 3.7869 -4.6432 -2.0055 28 6 3.2869 -3.5379 -1.3794 29 6 2.0081 -3.5851 -0.8211 30 1 -0.3633 0.1236 1.0202 31 1 -0.3634 0.8217 -0.6172 32 1 -0.3633 -0.9453 -0.4029 33 1 1.7406 1.9521 0.7159 34 1 3.2354 1.0892 0.2806 35 1 2.0880 4.0927 -1.5985 36 1 3.5420 3.4636 -0.7083 37 1 2.7876 3.0161 -3.6873 38 1 4.4502 3.0848 -2.9559 39 1 6.2169 1.2040 -4.4652 40 1 -0.3355 -1.7592 0.8963 41 1 -1.3542 -5.9682 -1.1953 42 1 1.2185 -6.8060 -1.6356 43 1 3.4567 -6.6744 -2.5953 44 1 4.7760 -4.6090 -2.4377 45 1 3.8756 -2.6346 -1.3166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085857166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = 73.995067 kcal Electronic energy + Delta-G solvation = -30738.774371 eV Core-core repulsion = 26725.070693 eV Total energy + Delta-G solvation = -4013.703678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15012 -39.48040 -38.03582 -37.69254 -36.78248 -35.13179 -32.24211 -31.96457 -31.21195 -30.13918 -28.00410 -27.72203 -26.70763 -24.45934 -23.60780 -23.28735 -22.95420 -21.79885 -19.61846 -19.17562 -18.98010 -17.86015 -17.71833 -16.76965 -16.60364 -15.94267 -15.78853 -15.22685 -15.04750 -14.68170 -14.51368 -14.12381 -13.82135 -13.75054 -13.58621 -13.31987 -13.25035 -12.78331 -12.62178 -12.26881 -12.04304 -11.96177 -11.56101 -11.45100 -11.36972 -11.28851 -11.02228 -10.89431 -10.61920 -10.42909 -9.97415 -9.93274 -9.76021 -9.64977 -9.43421 -9.16540 -9.12732 -8.65827 -8.24290 -7.98930 -6.74807 -5.63337 -2.94995 0.02337 0.82389 1.68973 2.72722 3.08321 3.32699 3.42575 3.43620 3.45457 3.49822 3.99209 4.38739 4.45252 4.53267 4.61933 4.81139 4.90998 5.00035 5.12045 5.18744 5.25331 5.36203 5.41417 5.52242 5.56724 5.64377 5.65896 5.71583 5.86023 5.88714 5.95850 6.00268 6.10170 6.24481 6.35086 6.41875 6.47992 6.57503 6.67473 6.74001 6.86744 6.91607 7.22209 7.33657 7.49963 7.67113 7.72901 7.73872 8.12915 8.52901 9.19100 9.84699 10.71274 11.52958 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.005225 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.907844 B = 5357.076850 C = 7406.737617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.603 5.603 3 C 0.113 3.887 4 C 0.124 3.876 5 H 0.043 0.957 6 C -0.157 4.157 7 C 0.150 3.850 8 N -0.597 5.597 9 C -0.198 4.198 10 H 0.083 0.917 11 C -0.012 4.012 12 N -0.925 5.925 13 Si 0.893 3.107 14 H -0.292 1.292 15 H -0.293 1.293 16 H -0.269 1.269 17 C 0.561 3.439 18 O -0.501 6.501 19 C -0.165 4.165 20 C 0.114 3.886 21 N -0.516 5.516 22 C 0.370 3.630 23 O -0.476 6.476 24 C -0.125 4.125 25 C -0.090 4.090 26 C -0.114 4.114 27 C -0.096 4.096 28 C -0.097 4.097 29 C 0.021 3.979 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.020 0.980 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.178 0.822 41 H 0.404 0.596 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 -8.381 6.282 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.335 5.335 3 C -0.009 4.009 4 C 0.016 3.984 5 H 0.060 0.940 6 C -0.196 4.196 7 C 0.025 3.975 8 N -0.323 5.323 9 C -0.326 4.326 10 H 0.101 0.899 11 C -0.207 4.207 12 N -0.574 5.574 13 Si 0.724 3.276 14 H -0.220 1.220 15 H -0.219 1.219 16 H -0.195 1.195 17 C 0.349 3.651 18 O -0.376 6.376 19 C -0.170 4.170 20 C -0.030 4.030 21 N -0.235 5.235 22 C 0.177 3.823 23 O -0.284 6.284 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.132 4.132 27 C -0.115 4.115 28 C -0.115 4.115 29 C 0.016 3.984 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.195 0.805 41 H 0.263 0.737 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.225 -8.698 7.109 16.603 hybrid contribution 0.802 -0.775 -1.262 1.684 sum -11.423 -9.473 5.847 15.950 Atomic orbital electron populations 1.22424 0.80781 1.04168 1.01435 1.47572 1.06304 1.06295 1.73375 1.22008 0.98681 0.82450 0.97808 1.22645 0.93101 0.92086 0.90568 0.93988 1.23776 0.99569 0.94979 1.01256 1.22301 1.00209 0.83924 0.91039 1.46027 1.36752 1.05557 1.43935 1.19127 1.05621 0.84282 1.23540 0.89900 1.24713 0.98255 0.96791 1.00976 1.69800 1.25273 1.25578 1.36707 0.86419 0.78950 0.84151 0.78106 1.21996 1.21905 1.19460 1.17619 0.87087 0.82743 0.77693 1.90846 1.12907 1.86410 1.47462 1.22037 0.96106 0.95236 1.03661 1.23132 0.89852 0.93668 0.96347 1.66602 1.39308 0.99507 1.18055 1.19339 0.87457 0.84955 0.90550 1.84621 1.59678 1.34793 1.49323 1.18829 0.95786 0.95387 1.02861 1.20826 0.95952 0.97126 0.97095 1.20997 0.94527 0.98219 0.99493 1.21240 1.00406 0.92701 0.97155 1.21703 0.94165 1.00880 0.94741 1.18768 0.94144 0.90616 0.94881 0.92178 0.90866 0.89755 0.91517 0.88033 0.93189 0.90622 0.96197 0.90153 0.94048 0.80507 0.73691 0.84639 0.85369 0.85278 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 8.82 59.85 0.53 1.16 16 2 N -0.60 -9.85 2.91 -182.95 -0.53 -10.38 16 3 C 0.11 1.97 5.53 -4.04 -0.02 1.95 16 4 C 0.12 2.42 4.42 -66.86 -0.30 2.13 16 5 H 0.04 0.80 7.43 -51.93 -0.39 0.42 16 6 C -0.16 -2.88 7.86 -25.81 -0.20 -3.08 16 7 C 0.15 3.54 7.70 -2.98 -0.02 3.51 16 8 N -0.60 -15.05 3.57 -170.76 -0.61 -15.66 16 9 C -0.20 -5.53 10.24 -15.06 -0.15 -5.69 16 10 H 0.08 2.29 4.30 -52.49 -0.23 2.06 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -27.95 11.28 55.49 0.63 -27.33 16 13 Si 0.89 22.50 29.48 -169.99 -5.01 17.49 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.27 -6.35 5.74 56.52 0.32 -6.03 16 17 C 0.56 10.62 6.20 -12.65 -0.08 10.54 16 18 O -0.50 -11.39 12.48 5.24 0.07 -11.32 16 19 C -0.17 -2.77 5.67 -102.68 -0.58 -3.36 16 20 C 0.11 1.58 8.63 -17.15 -0.15 1.43 16 21 N -0.52 -7.23 10.25 -12.66 -0.13 -7.36 16 22 C 0.37 4.91 7.79 -16.44 -0.13 4.79 16 23 O -0.48 -4.84 12.80 -17.47 -0.22 -5.07 16 24 C -0.13 -1.81 5.75 -106.78 -0.61 -2.43 16 25 C -0.09 -1.10 9.58 -39.55 -0.38 -1.48 16 26 C -0.11 -1.44 9.95 -39.91 -0.40 -1.84 16 27 C -0.10 -1.52 9.96 -39.85 -0.40 -1.92 16 28 C -0.10 -1.83 9.13 -39.69 -0.36 -2.19 16 29 C 0.02 0.36 5.90 -104.77 -0.62 -0.25 16 30 H 0.06 0.52 7.67 -51.93 -0.40 0.13 16 31 H 0.07 0.79 7.39 -51.93 -0.38 0.40 16 32 H 0.08 0.96 4.40 -51.93 -0.23 0.74 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 2.12 7.02 -51.93 -0.36 1.76 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 2.11 6.86 -51.93 -0.36 1.76 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.18 1.95 4.90 -52.48 -0.26 1.69 16 41 H 0.40 2.01 9.06 45.56 0.41 2.42 16 42 H 0.14 1.22 7.66 -52.48 -0.40 0.82 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 1.95 7.93 -52.49 -0.42 1.53 16 45 H 0.16 3.63 3.91 -52.49 -0.20 3.42 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -35.74 358.75 -8.91 -44.65 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.53 Total: 6.73 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.97 Total: 2.84 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.65 Total: -60.73 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.16 Total: -16.39 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.01 Total: 17.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.74 -8.91 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085857166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.646 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds