Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99873 * 2 1 4 4 C 1.52996 * 109.47157 * 284.15958 * 3 2 1 5 5 H 1.09000 * 112.96718 * 44.16391 * 4 3 2 6 6 C 1.53948 * 113.77128 * 175.84748 * 4 3 2 7 7 C 1.53942 * 86.29078 * 137.90525 * 6 4 3 8 8 N 1.47579 * 113.76852 * 272.34046 * 4 3 2 9 9 C 1.36939 * 134.49319 * 41.05927 * 8 4 3 10 10 H 1.07998 * 120.00227 * 7.19697 * 9 8 4 11 11 C 1.38813 * 120.00146 * 187.20280 * 9 8 4 12 12 N 1.31618 * 119.99956 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99872 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47464 * 89.99528 * 13 11 9 15 15 H 1.48506 * 109.46662 * 209.99809 * 13 11 9 16 16 H 1.48497 * 109.47201 * 329.99053 * 13 11 9 17 17 C 1.34778 * 120.00156 * 180.02562 * 2 1 3 18 18 O 1.21639 * 119.99933 * 186.03633 * 17 2 1 19 19 C 1.47144 * 119.99920 * 6.03814 * 17 2 1 20 20 C 1.39031 * 121.09929 * 327.34586 * 19 17 2 21 21 N 1.32072 * 121.40827 * 180.02562 * 20 19 17 22 22 C 1.31828 * 123.59921 * 0.02562 * 21 20 19 23 23 O 1.35259 * 119.60855 * 179.97438 * 22 21 20 24 24 C 1.41170 * 120.77980 * 0.25916 * 22 21 20 25 25 C 1.40128 * 122.12006 * 180.28111 * 24 22 21 26 26 C 1.36352 * 119.51510 * 179.68173 * 25 24 22 27 27 C 1.39190 * 121.05322 * 359.75322 * 26 25 24 28 28 C 1.36513 * 120.89193 * 359.97438 * 27 26 25 29 29 C 1.39620 * 119.43598 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.47028 * 276.90924 * 1 2 3 31 31 H 1.09000 * 109.47356 * 36.91206 * 1 2 3 32 32 H 1.08993 * 109.47225 * 156.91371 * 1 2 3 33 33 H 1.09000 * 109.47063 * 44.15548 * 3 2 1 34 34 H 1.09001 * 109.47189 * 164.15687 * 3 2 1 35 35 H 1.08997 * 113.74190 * 252.25092 * 6 4 3 36 36 H 1.08997 * 113.74057 * 23.45251 * 6 4 3 37 37 H 1.09003 * 113.76846 * 90.69500 * 7 6 4 38 38 H 1.09007 * 113.76968 * 221.97997 * 7 6 4 39 39 H 0.97004 * 119.99891 * 179.97438 * 12 11 9 40 40 H 1.08003 * 119.29877 * 0.02562 * 20 19 17 41 41 H 0.96706 * 113.99910 * 90.00790 * 23 22 21 42 42 H 1.08003 * 120.23989 * 359.43304 * 25 24 22 43 43 H 1.07991 * 119.47326 * 179.76961 * 26 25 24 44 44 H 1.08002 * 119.55057 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.28022 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1469 1.8869 -1.3986 5 1 1.1555 1.8392 -1.8491 6 6 2.8023 3.2771 -1.4868 7 6 3.4079 2.7969 -2.8182 8 7 3.2305 1.4302 -2.2903 9 6 3.8306 0.2230 -2.5312 10 1 3.4329 -0.6763 -2.0847 11 6 4.9500 0.1553 -3.3493 12 7 5.4344 1.2513 -3.8938 13 14 5.7680 -1.4915 -3.6785 14 1 5.1587 -2.1155 -4.8804 15 1 7.2203 -1.2852 -3.9101 16 1 5.5754 -2.3829 -2.5065 17 6 2.1389 -1.1672 -0.0005 18 8 3.3503 -1.1701 0.1103 19 6 1.4094 -2.4379 -0.1351 20 6 0.1291 -2.5896 0.3854 21 7 -0.5310 -3.7275 0.2686 22 6 -0.0460 -4.7935 -0.3366 23 8 -0.7931 -5.9187 -0.4092 24 6 1.2463 -4.7764 -0.9046 25 6 1.7873 -5.8910 -1.5591 26 6 3.0390 -5.8138 -2.0943 27 6 3.7869 -4.6432 -2.0055 28 6 3.2869 -3.5379 -1.3794 29 6 2.0081 -3.5851 -0.8211 30 1 -0.3633 0.1236 1.0202 31 1 -0.3634 0.8217 -0.6172 32 1 -0.3633 -0.9453 -0.4029 33 1 1.7406 1.9521 0.7159 34 1 3.2354 1.0892 0.2806 35 1 2.0880 4.0927 -1.5985 36 1 3.5420 3.4636 -0.7083 37 1 2.7876 3.0161 -3.6873 38 1 4.4502 3.0848 -2.9559 39 1 6.2169 1.2040 -4.4652 40 1 -0.3355 -1.7592 0.8963 41 1 -1.3542 -5.9682 -1.1953 42 1 1.2185 -6.8060 -1.6356 43 1 3.4567 -6.6744 -2.5953 44 1 4.7760 -4.6090 -2.4377 45 1 3.8756 -2.6346 -1.3166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085857166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 45.907393 kcal Electronic energy + Delta-G solvation = -30739.992344 eV Core-core repulsion = 26725.070693 eV Total energy + Delta-G solvation = -4014.921651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.26326 -40.78854 -39.40389 -38.99264 -37.83738 -36.46275 -34.18500 -33.22877 -32.32244 -31.34233 -29.82822 -29.15950 -27.88587 -25.63246 -25.25421 -24.69525 -24.31238 -23.12464 -20.89154 -20.70291 -20.20941 -19.01264 -18.79037 -18.61713 -17.80268 -17.20785 -16.92320 -16.81301 -16.41088 -16.05293 -15.75690 -15.70918 -15.43923 -14.99839 -14.85960 -14.53256 -14.43408 -14.38318 -13.78225 -13.38026 -13.33838 -13.10095 -13.04826 -12.97606 -12.93075 -12.57939 -12.53966 -12.46654 -12.35410 -12.23770 -11.70533 -11.46438 -11.38583 -11.11906 -10.90071 -10.76228 -10.46000 -10.24891 -9.58432 -9.10249 -8.77129 -7.82041 -5.12361 -1.06610 -0.27907 0.55738 1.32375 1.36737 1.45901 1.59478 1.85900 2.18599 2.39514 2.48628 2.86268 3.28402 3.37143 3.39245 3.44925 3.53030 3.76239 3.83512 3.98736 4.02592 4.18463 4.21797 4.28114 4.35424 4.39459 4.47201 4.54149 4.58408 4.67950 4.76135 4.86405 4.87750 4.94162 4.99158 5.08004 5.15594 5.22135 5.32709 5.40080 5.43363 5.59198 5.69427 5.75122 5.81571 6.05932 6.40262 6.48830 6.70477 7.03559 7.21313 7.72123 8.65062 9.33864 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.005225 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.907844 B = 5357.076850 C = 7406.737617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.603 5.603 3 C 0.120 3.880 4 C 0.126 3.874 5 H 0.061 0.939 6 C -0.126 4.126 7 C 0.138 3.862 8 N -0.629 5.629 9 C -0.184 4.184 10 H 0.082 0.918 11 C -0.079 4.079 12 N -0.959 5.959 13 Si 0.940 3.060 14 H -0.289 1.289 15 H -0.301 1.301 16 H -0.257 1.257 17 C 0.555 3.445 18 O -0.558 6.558 19 C -0.206 4.206 20 C 0.142 3.858 21 N -0.528 5.528 22 C 0.394 3.606 23 O -0.470 6.470 24 C -0.141 4.141 25 C -0.067 4.067 26 C -0.118 4.118 27 C -0.097 4.097 28 C -0.143 4.143 29 C 0.004 3.996 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.016 0.984 38 H 0.042 0.958 39 H 0.240 0.760 40 H 0.207 0.793 41 H 0.431 0.569 42 H 0.179 0.821 43 H 0.168 0.832 44 H 0.126 0.874 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.850 -10.368 7.517 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.335 5.335 3 C -0.003 4.003 4 C 0.020 3.980 5 H 0.079 0.921 6 C -0.164 4.164 7 C 0.013 3.987 8 N -0.355 5.355 9 C -0.313 4.313 10 H 0.099 0.901 11 C -0.270 4.270 12 N -0.611 5.611 13 Si 0.770 3.230 14 H -0.216 1.216 15 H -0.229 1.229 16 H -0.182 1.182 17 C 0.343 3.657 18 O -0.437 6.437 19 C -0.211 4.211 20 C -0.002 4.002 21 N -0.248 5.248 22 C 0.202 3.798 23 O -0.282 6.282 24 C -0.145 4.145 25 C -0.086 4.086 26 C -0.135 4.135 27 C -0.117 4.117 28 C -0.161 4.161 29 C -0.001 4.001 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.223 0.777 41 H 0.295 0.705 42 H 0.197 0.803 43 H 0.185 0.815 44 H 0.144 0.856 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.588 -10.692 8.355 21.431 hybrid contribution 1.924 -0.262 -1.598 2.514 sum -14.664 -10.954 6.757 19.511 Atomic orbital electron populations 1.22745 0.77524 1.04828 1.04211 1.47709 1.08318 1.05135 1.72332 1.21815 0.97355 0.83805 0.97316 1.22895 0.92231 0.92248 0.90653 0.92127 1.23513 0.99665 0.95757 0.97509 1.22298 0.98495 0.84090 0.93799 1.46440 1.38529 1.05132 1.45388 1.19397 1.04944 0.85642 1.21298 0.90075 1.25391 0.99696 0.99480 1.02429 1.69988 1.25775 1.26993 1.38301 0.85627 0.77333 0.81652 0.78340 1.21624 1.22865 1.18159 1.18072 0.86675 0.84138 0.76768 1.90809 1.15398 1.87326 1.50157 1.21913 0.97673 0.94545 1.06999 1.23518 0.88262 0.94346 0.94075 1.66795 1.39101 0.99784 1.19111 1.19430 0.87068 0.85187 0.88156 1.84570 1.59726 1.32948 1.50975 1.19068 0.96344 0.95161 1.03925 1.21338 0.95587 0.97499 0.94156 1.21328 0.94589 0.97902 0.99707 1.21428 1.00691 0.93350 0.96186 1.21402 0.95548 1.00506 0.98664 1.18937 0.93913 0.92131 0.95073 0.88274 0.89453 0.89677 0.86682 0.92317 0.88626 0.90461 0.96573 0.93943 0.95140 0.77659 0.70458 0.80348 0.81457 0.85611 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 8.82 127.77 1.13 2.07 16 2 N -0.60 -19.13 2.91 -850.98 -2.47 -21.61 16 3 C 0.12 4.06 5.53 86.38 0.48 4.54 16 4 C 0.13 4.78 4.42 45.09 0.20 4.98 16 5 H 0.06 2.13 7.43 -2.39 -0.02 2.12 16 6 C -0.13 -4.42 7.86 31.25 0.25 -4.18 16 7 C 0.14 6.70 7.70 86.48 0.67 7.37 16 8 N -0.63 -32.71 3.57 -694.16 -2.48 -35.19 16 9 C -0.18 -10.82 10.24 84.03 0.86 -9.96 16 10 H 0.08 4.78 4.30 -2.91 -0.01 4.77 16 11 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 12 N -0.96 -61.65 11.28 21.65 0.24 -61.40 16 13 Si 0.94 49.50 29.48 68.60 2.02 51.52 16 14 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 15 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 16 H -0.26 -12.85 5.74 99.48 0.57 -12.28 16 17 C 0.55 21.64 6.20 86.58 0.54 22.18 16 18 O -0.56 -27.30 12.48 -4.15 -0.05 -27.35 16 19 C -0.21 -6.94 5.67 -18.61 -0.11 -7.05 16 20 C 0.14 3.61 8.63 84.85 0.73 4.34 16 21 N -0.53 -13.08 10.25 -307.29 -3.15 -16.23 16 22 C 0.39 9.07 7.79 85.41 0.67 9.74 16 23 O -0.47 -7.18 12.80 -85.43 -1.09 -8.27 16 24 C -0.14 -3.78 5.75 -21.26 -0.12 -3.90 16 25 C -0.07 -1.37 9.58 22.29 0.21 -1.16 16 26 C -0.12 -2.66 9.95 22.06 0.22 -2.44 16 27 C -0.10 -3.14 9.96 22.10 0.22 -2.92 16 28 C -0.14 -5.69 9.13 22.20 0.20 -5.49 16 29 C 0.00 0.15 5.90 -19.96 -0.12 0.04 16 30 H 0.10 1.23 7.67 -2.39 -0.02 1.21 16 31 H 0.09 1.51 7.39 -2.39 -0.02 1.49 16 32 H 0.09 1.68 4.40 -2.39 -0.01 1.67 16 33 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.06 2.53 7.02 -2.39 -0.02 2.52 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.04 2.36 6.86 -2.38 -0.02 2.35 16 39 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.21 3.80 4.90 -2.91 -0.01 3.79 16 41 H 0.43 1.85 9.06 -74.05 -0.67 1.18 16 42 H 0.18 2.11 7.66 -2.91 -0.02 2.09 16 43 H 0.17 2.43 8.06 -2.92 -0.02 2.41 16 44 H 0.13 3.95 7.93 -2.91 -0.02 3.92 16 45 H 0.12 5.74 3.91 -2.91 -0.01 5.73 16 Total: -1.00 -87.90 358.75 -0.23 -88.13 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.26 Total: 16.66 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.49 Total: 13.76 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -7.85 Total: -134.43 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.15 Total: -35.62 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.02 Total: 51.52 kcal Total: -87.90 -0.23 -88.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085857166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.033 kcal (2) G-P(sol) polarization free energy of solvation -87.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds