Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46495 * 120.00548 * 2 1 4 4 C 1.52999 * 109.47032 * 264.10779 * 3 2 1 5 5 H 1.08994 * 112.96648 * 315.93884 * 4 3 2 6 6 C 1.53949 * 113.76775 * 184.26093 * 4 3 2 7 7 C 1.53944 * 86.29348 * 222.09071 * 6 4 3 8 8 N 1.47584 * 113.77051 * 87.62463 * 4 3 2 9 9 C 1.36942 * 134.48784 * 318.92808 * 8 4 3 10 10 H 1.08004 * 119.99645 * 330.75512 * 9 8 4 11 11 C 1.38807 * 119.99661 * 150.76017 * 9 8 4 12 12 N 1.31622 * 119.99474 * 166.85138 * 11 9 8 13 13 Si 1.86796 * 120.00322 * 346.85061 * 11 9 8 14 14 H 1.48506 * 109.47078 * 89.99322 * 13 11 9 15 15 H 1.48499 * 109.47488 * 209.99283 * 13 11 9 16 16 H 1.48500 * 109.47094 * 329.99337 * 13 11 9 17 17 C 1.34776 * 119.99645 * 180.02562 * 2 1 3 18 18 O 1.21645 * 120.00349 * 185.33631 * 17 2 1 19 19 C 1.47149 * 120.00231 * 5.33167 * 17 2 1 20 20 C 1.39034 * 121.10068 * 39.60277 * 19 17 2 21 21 N 1.32065 * 121.41079 * 180.02562 * 20 19 17 22 22 C 1.31829 * 123.59758 * 359.97438 * 21 20 19 23 23 O 1.35255 * 119.60958 * 179.97438 * 22 21 20 24 24 C 1.41182 * 120.77976 * 359.97438 * 22 21 20 25 25 C 1.40120 * 122.10842 * 180.02562 * 24 22 21 26 26 C 1.36350 * 119.50734 * 179.97438 * 25 24 22 27 27 C 1.39187 * 121.05545 * 0.02562 * 26 25 24 28 28 C 1.36514 * 120.89085 * 0.02562 * 27 26 25 29 29 C 1.39618 * 119.43902 * 359.74733 * 28 27 26 30 30 H 1.09000 * 109.47259 * 89.25846 * 1 2 3 31 31 H 1.09002 * 109.47679 * 209.26410 * 1 2 3 32 32 H 1.09000 * 109.46930 * 329.26424 * 1 2 3 33 33 H 1.09000 * 109.47793 * 144.10575 * 3 2 1 34 34 H 1.09007 * 109.46964 * 24.10736 * 3 2 1 35 35 H 1.08997 * 113.74070 * 336.43948 * 6 4 3 36 36 H 1.09005 * 113.74065 * 107.64002 * 6 4 3 37 37 H 1.08994 * 113.76896 * 137.90582 * 7 6 4 38 38 H 1.09002 * 113.77214 * 269.19656 * 7 6 4 39 39 H 0.97008 * 119.99768 * 180.02562 * 12 11 9 40 40 H 1.08004 * 119.29201 * 0.02562 * 20 19 17 41 41 H 0.96703 * 113.99982 * 90.00100 * 23 22 21 42 42 H 1.08004 * 120.24862 * 0.02562 * 25 24 22 43 43 H 1.08006 * 119.47794 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.55775 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.28402 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.5808 1.6362 -1.4349 5 1 2.9699 0.7901 -2.0012 6 6 3.4472 2.9044 -1.5402 7 6 2.5699 3.2827 -2.7473 8 7 1.5426 2.4037 -2.1499 9 6 0.1774 2.3304 -2.2271 10 1 -0.3201 1.3795 -2.1047 11 6 -0.5671 3.4780 -2.4626 12 7 -1.8375 3.3819 -2.7932 13 14 0.2340 5.1586 -2.3105 14 1 0.8022 5.5568 -3.6235 15 1 -0.7827 6.1553 -1.8883 16 1 1.3194 5.0998 -1.2987 17 6 2.1387 -1.1672 -0.0005 18 8 3.3512 -1.1697 0.0974 19 6 1.4077 -2.4388 -0.1195 20 6 0.3194 -2.5641 -0.9756 21 7 -0.3413 -3.7021 -1.0868 22 6 -0.0344 -4.7928 -0.4128 23 8 -0.7673 -5.9157 -0.5890 24 6 1.0504 -4.8024 0.4907 25 6 1.4015 -5.9457 1.2208 26 6 2.4599 -5.8958 2.0789 27 6 3.1975 -4.7267 2.2420 28 6 2.8809 -3.5955 1.5466 29 6 1.8055 -3.6156 0.6564 30 1 -0.3634 0.0133 -1.0276 31 1 -0.3634 -0.8965 0.5023 32 1 -0.3633 0.8833 0.5252 33 1 3.1002 1.1670 0.6025 34 1 1.5669 2.0524 0.4198 35 1 3.3410 3.5801 -0.6915 36 1 4.4876 2.7050 -1.7970 37 1 2.2882 4.3353 -2.7729 38 1 2.9558 2.9224 -3.7010 39 1 -2.3577 4.1839 -2.9582 40 1 0.0077 -1.7125 -1.5622 41 1 -0.4396 -6.4930 -1.2923 42 1 0.8384 -6.8599 1.1041 43 1 2.7303 -6.7774 2.6411 44 1 4.0310 -4.7142 2.9286 45 1 3.4602 -2.6939 1.6804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085857167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 60.909378 kcal Electronic energy + Delta-G solvation = -29847.621802 eV Core-core repulsion = 25833.350687 eV Total energy + Delta-G solvation = -4014.271116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23160 -39.59871 -38.23807 -38.00365 -36.83856 -35.10567 -32.41915 -32.24537 -31.39072 -30.16641 -28.71443 -27.89708 -26.41250 -24.65333 -23.78634 -23.42892 -23.10036 -22.15938 -19.82127 -19.26446 -18.86432 -17.99142 -17.64951 -17.15797 -16.85897 -16.04056 -15.84251 -15.53099 -15.23340 -14.90066 -14.65035 -14.31312 -14.13618 -13.82103 -13.53764 -13.40761 -13.17463 -13.03227 -12.47782 -12.37621 -12.34114 -12.14695 -12.06882 -11.88722 -11.55335 -11.45450 -11.30222 -11.09639 -10.88566 -10.49349 -10.33420 -10.12654 -9.92000 -9.78982 -9.42812 -9.36952 -9.35046 -8.67107 -8.33081 -8.14006 -6.97699 -5.99130 -3.38433 -0.10393 0.66799 1.46443 2.61584 3.00073 3.20153 3.27723 3.32455 3.43358 3.47151 3.81667 4.32495 4.35176 4.46662 4.50838 4.62788 4.65787 4.82038 4.84630 5.03637 5.22401 5.24820 5.33708 5.34528 5.45187 5.49700 5.67654 5.72684 5.81761 5.86340 5.93068 5.96368 6.08489 6.11729 6.17787 6.19805 6.22148 6.29363 6.36566 6.42662 6.44870 6.57258 6.78479 7.06778 7.16398 7.38503 7.63597 7.71629 8.30205 8.31533 8.66233 9.60795 10.36133 11.16912 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.003217 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.353629 B = 8701.089708 C = 9847.091939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.589 5.589 3 C 0.120 3.880 4 C 0.133 3.867 5 H 0.056 0.944 6 C -0.147 4.147 7 C 0.099 3.901 8 N -0.617 5.617 9 C -0.234 4.234 10 H 0.091 0.909 11 C 0.028 3.972 12 N -0.912 5.912 13 Si 0.890 3.110 14 H -0.289 1.289 15 H -0.303 1.303 16 H -0.269 1.269 17 C 0.564 3.436 18 O -0.541 6.541 19 C -0.176 4.176 20 C 0.146 3.854 21 N -0.509 5.509 22 C 0.373 3.627 23 O -0.476 6.476 24 C -0.128 4.128 25 C -0.080 4.080 26 C -0.124 4.124 27 C -0.093 4.093 28 C -0.104 4.104 29 C 0.022 3.978 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.175 0.825 41 H 0.405 0.595 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -17.178 9.444 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.319 5.319 3 C -0.003 4.003 4 C 0.026 3.974 5 H 0.073 0.927 6 C -0.186 4.186 7 C -0.026 4.026 8 N -0.346 5.346 9 C -0.360 4.360 10 H 0.108 0.892 11 C -0.171 4.171 12 N -0.555 5.555 13 Si 0.722 3.278 14 H -0.216 1.216 15 H -0.231 1.231 16 H -0.194 1.194 17 C 0.352 3.648 18 O -0.421 6.421 19 C -0.182 4.182 20 C 0.002 3.998 21 N -0.227 5.227 22 C 0.180 3.820 23 O -0.284 6.284 24 C -0.132 4.132 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.113 4.113 28 C -0.121 4.121 29 C 0.017 3.983 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.191 0.809 41 H 0.265 0.735 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.484 -16.801 9.310 20.614 hybrid contribution 0.976 0.841 -0.110 1.293 sum 8.460 -15.960 9.200 20.271 Atomic orbital electron populations 1.22215 0.78579 1.02463 1.03521 1.47697 1.07648 1.05625 1.70978 1.21925 0.96634 0.83627 0.98136 1.22707 0.88866 0.94202 0.91667 0.92671 1.23584 0.97290 0.98201 0.99509 1.22845 0.89203 0.95751 0.94780 1.46307 1.00667 1.37025 1.50569 1.18645 0.77616 0.94522 1.45241 0.89202 1.25144 0.94847 0.97783 0.99333 1.69767 1.07457 1.28881 1.49380 0.86704 0.77965 0.84859 0.78308 1.21618 1.23121 1.19401 1.17684 0.86858 0.82980 0.77273 1.90745 1.13294 1.87261 1.50767 1.21935 0.99589 0.94644 1.01996 1.22905 0.88664 0.94049 0.94187 1.66672 1.30765 0.99854 1.25424 1.19413 0.85900 0.86732 0.89970 1.84616 1.54632 1.30304 1.58820 1.18862 0.97065 0.95420 1.01861 1.20896 0.96762 0.97111 0.95196 1.20956 0.95812 0.98462 0.98946 1.21118 0.99158 0.92581 0.98409 1.21214 0.95923 1.00076 0.94914 1.18754 0.94385 0.90568 0.94591 0.90427 0.92306 0.90032 0.90403 0.89223 0.90265 0.92133 0.93787 0.94028 0.92663 0.80855 0.73505 0.84543 0.85386 0.85251 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 8.25 59.84 0.49 1.69 16 2 N -0.59 -9.87 2.89 -182.96 -0.53 -10.39 16 3 C 0.12 2.07 5.30 -4.05 -0.02 2.05 16 4 C 0.13 2.55 4.49 -66.86 -0.30 2.25 16 5 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.15 -2.57 7.86 -25.79 -0.20 -2.77 16 7 C 0.10 2.05 7.56 -2.85 -0.02 2.03 16 8 N -0.62 -14.14 3.15 -169.74 -0.54 -14.68 16 9 C -0.23 -6.11 10.50 -15.06 -0.16 -6.27 16 10 H 0.09 2.42 5.46 -52.48 -0.29 2.14 16 11 C 0.03 0.78 5.50 -17.43 -0.10 0.69 16 12 N -0.91 -26.92 13.97 55.49 0.78 -26.14 16 13 Si 0.89 22.01 24.89 -169.99 -4.23 17.78 16 14 H -0.29 -7.16 7.09 56.52 0.40 -6.76 16 15 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 16 H -0.27 -6.34 6.69 56.52 0.38 -5.97 16 17 C 0.56 9.49 7.01 -12.64 -0.09 9.40 16 18 O -0.54 -10.04 14.68 5.24 0.08 -9.96 16 19 C -0.18 -2.69 5.18 -102.67 -0.53 -3.22 16 20 C 0.15 2.20 8.94 -17.16 -0.15 2.05 16 21 N -0.51 -7.52 10.25 -12.66 -0.13 -7.65 16 22 C 0.37 4.68 7.79 -16.44 -0.13 4.55 16 23 O -0.48 -4.60 12.80 -17.46 -0.22 -4.83 16 24 C -0.13 -1.56 5.75 -106.78 -0.61 -2.17 16 25 C -0.08 -0.74 9.58 -39.56 -0.38 -1.12 16 26 C -0.12 -1.03 9.95 -39.91 -0.40 -1.43 16 27 C -0.09 -0.89 9.96 -39.85 -0.40 -1.28 16 28 C -0.10 -1.29 9.27 -39.69 -0.37 -1.66 16 29 C 0.02 0.31 5.90 -104.77 -0.62 -0.31 16 30 H 0.08 1.38 4.72 -51.93 -0.25 1.14 16 31 H 0.06 0.83 6.21 -51.93 -0.32 0.51 16 32 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 33 H 0.08 1.26 7.53 -51.93 -0.39 0.87 16 34 H 0.09 1.60 7.83 -51.93 -0.41 1.19 16 35 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.97 3.94 -51.93 -0.20 0.76 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.17 2.66 5.87 -52.48 -0.31 2.35 16 41 H 0.41 1.81 9.06 45.56 0.41 2.22 16 42 H 0.14 0.92 7.66 -52.48 -0.40 0.52 16 43 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.15 1.98 6.21 -52.49 -0.33 1.65 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -33.34 361.62 -7.91 -41.25 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.58 Total: 4.69 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.98 Total: 4.48 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.42 Total: -58.86 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.15 Total: -14.79 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.23 Total: 17.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.34 -7.91 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085857167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.162 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds