Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46495 * 120.00548 * 2 1 4 4 C 1.52999 * 109.47032 * 264.10779 * 3 2 1 5 5 H 1.08994 * 112.96648 * 315.93884 * 4 3 2 6 6 C 1.53949 * 113.76775 * 184.26093 * 4 3 2 7 7 C 1.53944 * 86.29348 * 222.09071 * 6 4 3 8 8 N 1.47584 * 113.77051 * 87.62463 * 4 3 2 9 9 C 1.36942 * 134.48784 * 318.92808 * 8 4 3 10 10 H 1.08004 * 119.99645 * 330.75512 * 9 8 4 11 11 C 1.38807 * 119.99661 * 150.76017 * 9 8 4 12 12 N 1.31622 * 119.99474 * 166.85138 * 11 9 8 13 13 Si 1.86796 * 120.00322 * 346.85061 * 11 9 8 14 14 H 1.48506 * 109.47078 * 89.99322 * 13 11 9 15 15 H 1.48499 * 109.47488 * 209.99283 * 13 11 9 16 16 H 1.48500 * 109.47094 * 329.99337 * 13 11 9 17 17 C 1.34776 * 119.99645 * 180.02562 * 2 1 3 18 18 O 1.21645 * 120.00349 * 185.33631 * 17 2 1 19 19 C 1.47149 * 120.00231 * 5.33167 * 17 2 1 20 20 C 1.39034 * 121.10068 * 39.60277 * 19 17 2 21 21 N 1.32065 * 121.41079 * 180.02562 * 20 19 17 22 22 C 1.31829 * 123.59758 * 359.97438 * 21 20 19 23 23 O 1.35255 * 119.60958 * 179.97438 * 22 21 20 24 24 C 1.41182 * 120.77976 * 359.97438 * 22 21 20 25 25 C 1.40120 * 122.10842 * 180.02562 * 24 22 21 26 26 C 1.36350 * 119.50734 * 179.97438 * 25 24 22 27 27 C 1.39187 * 121.05545 * 0.02562 * 26 25 24 28 28 C 1.36514 * 120.89085 * 0.02562 * 27 26 25 29 29 C 1.39618 * 119.43902 * 359.74733 * 28 27 26 30 30 H 1.09000 * 109.47259 * 89.25846 * 1 2 3 31 31 H 1.09002 * 109.47679 * 209.26410 * 1 2 3 32 32 H 1.09000 * 109.46930 * 329.26424 * 1 2 3 33 33 H 1.09000 * 109.47793 * 144.10575 * 3 2 1 34 34 H 1.09007 * 109.46964 * 24.10736 * 3 2 1 35 35 H 1.08997 * 113.74070 * 336.43948 * 6 4 3 36 36 H 1.09005 * 113.74065 * 107.64002 * 6 4 3 37 37 H 1.08994 * 113.76896 * 137.90582 * 7 6 4 38 38 H 1.09002 * 113.77214 * 269.19656 * 7 6 4 39 39 H 0.97008 * 119.99768 * 180.02562 * 12 11 9 40 40 H 1.08004 * 119.29201 * 0.02562 * 20 19 17 41 41 H 0.96703 * 113.99982 * 90.00100 * 23 22 21 42 42 H 1.08004 * 120.24862 * 0.02562 * 25 24 22 43 43 H 1.08006 * 119.47794 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.55775 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.28402 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.5808 1.6362 -1.4349 5 1 2.9699 0.7901 -2.0012 6 6 3.4472 2.9044 -1.5402 7 6 2.5699 3.2827 -2.7473 8 7 1.5426 2.4037 -2.1499 9 6 0.1774 2.3304 -2.2271 10 1 -0.3201 1.3795 -2.1047 11 6 -0.5671 3.4780 -2.4626 12 7 -1.8375 3.3819 -2.7932 13 14 0.2340 5.1586 -2.3105 14 1 0.8022 5.5568 -3.6235 15 1 -0.7827 6.1553 -1.8883 16 1 1.3194 5.0998 -1.2987 17 6 2.1387 -1.1672 -0.0005 18 8 3.3512 -1.1697 0.0974 19 6 1.4077 -2.4388 -0.1195 20 6 0.3194 -2.5641 -0.9756 21 7 -0.3413 -3.7021 -1.0868 22 6 -0.0344 -4.7928 -0.4128 23 8 -0.7673 -5.9157 -0.5890 24 6 1.0504 -4.8024 0.4907 25 6 1.4015 -5.9457 1.2208 26 6 2.4599 -5.8958 2.0789 27 6 3.1975 -4.7267 2.2420 28 6 2.8809 -3.5955 1.5466 29 6 1.8055 -3.6156 0.6564 30 1 -0.3634 0.0133 -1.0276 31 1 -0.3634 -0.8965 0.5023 32 1 -0.3633 0.8833 0.5252 33 1 3.1002 1.1670 0.6025 34 1 1.5669 2.0524 0.4198 35 1 3.3410 3.5801 -0.6915 36 1 4.4876 2.7050 -1.7970 37 1 2.2882 4.3353 -2.7729 38 1 2.9558 2.9224 -3.7010 39 1 -2.3577 4.1839 -2.9582 40 1 0.0077 -1.7125 -1.5622 41 1 -0.4396 -6.4930 -1.2923 42 1 0.8384 -6.8599 1.1041 43 1 2.7303 -6.7774 2.6411 44 1 4.0310 -4.7142 2.9286 45 1 3.4602 -2.6939 1.6804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085857167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = 35.804205 kcal Electronic energy + Delta-G solvation = -29848.710444 eV Core-core repulsion = 25833.350687 eV Total energy + Delta-G solvation = -4015.359758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.23204 -40.89403 -39.66945 -38.95641 -37.80969 -36.46722 -34.40402 -33.26290 -32.25723 -31.30341 -30.39885 -29.34781 -27.74932 -25.77709 -25.10407 -24.71424 -24.46777 -23.26336 -21.04159 -20.69439 -20.02867 -19.07292 -18.92353 -18.59811 -17.94753 -17.46952 -17.16868 -16.77504 -16.53070 -16.07914 -15.74688 -15.64539 -15.26595 -15.07300 -14.91590 -14.85107 -14.46141 -14.35025 -14.23037 -13.64823 -13.43913 -13.11174 -13.06819 -12.97849 -12.93482 -12.88828 -12.78286 -12.64466 -12.33605 -12.14730 -11.99400 -11.55826 -11.33619 -11.19145 -10.98172 -10.70670 -10.48896 -10.20443 -9.72159 -9.10954 -8.88678 -8.10791 -5.46270 -1.05290 -0.23369 0.58306 1.33737 1.40884 1.51531 1.51802 1.87805 1.99546 2.38798 2.47572 2.88177 2.94220 3.21691 3.26767 3.38220 3.54080 3.78404 3.79281 3.84878 4.07969 4.14518 4.20043 4.25035 4.32528 4.38064 4.43709 4.52866 4.53907 4.59384 4.63144 4.66483 4.78066 4.88188 4.90585 4.96002 4.98516 5.03089 5.27310 5.34055 5.39159 5.43871 5.51841 5.64155 5.81719 6.23026 6.30689 6.47905 6.62266 6.72214 6.98918 7.52421 8.39352 9.09067 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.003217 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.353629 B = 8701.089708 C = 9847.091939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.594 5.594 3 C 0.124 3.876 4 C 0.133 3.867 5 H 0.045 0.955 6 C -0.124 4.124 7 C 0.087 3.913 8 N -0.640 5.640 9 C -0.211 4.211 10 H 0.071 0.929 11 C -0.031 4.031 12 N -0.960 5.960 13 Si 0.944 3.056 14 H -0.290 1.290 15 H -0.313 1.313 16 H -0.248 1.248 17 C 0.568 3.432 18 O -0.561 6.561 19 C -0.199 4.199 20 C 0.145 3.855 21 N -0.543 5.543 22 C 0.389 3.611 23 O -0.474 6.474 24 C -0.142 4.142 25 C -0.071 4.071 26 C -0.116 4.116 27 C -0.074 4.074 28 C -0.135 4.135 29 C 0.007 3.993 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.051 0.949 39 H 0.259 0.741 40 H 0.158 0.842 41 H 0.430 0.570 42 H 0.168 0.832 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -19.664 11.416 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.323 5.323 3 C 0.001 3.999 4 C 0.026 3.974 5 H 0.063 0.937 6 C -0.162 4.162 7 C -0.037 4.037 8 N -0.368 5.368 9 C -0.339 4.339 10 H 0.088 0.912 11 C -0.226 4.226 12 N -0.607 5.607 13 Si 0.775 3.225 14 H -0.218 1.218 15 H -0.242 1.242 16 H -0.173 1.173 17 C 0.357 3.643 18 O -0.442 6.442 19 C -0.205 4.205 20 C 0.001 3.999 21 N -0.263 5.263 22 C 0.196 3.804 23 O -0.286 6.286 24 C -0.146 4.146 25 C -0.091 4.091 26 C -0.134 4.134 27 C -0.093 4.093 28 C -0.153 4.153 29 C 0.002 3.998 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.175 0.825 41 H 0.294 0.706 42 H 0.185 0.815 43 H 0.187 0.813 44 H 0.176 0.824 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.864 -19.320 11.282 24.451 hybrid contribution 0.321 1.286 -0.695 1.497 sum 10.185 -18.034 10.588 23.261 Atomic orbital electron populations 1.22032 0.78440 1.02922 1.02053 1.47734 1.07721 1.05735 1.71141 1.21827 0.97219 0.83794 0.97061 1.22770 0.87918 0.94573 0.92096 0.93745 1.23451 0.98286 0.96420 0.98060 1.23053 0.89186 0.94810 0.96644 1.46579 1.00199 1.37960 1.52084 1.18673 0.79473 0.93642 1.42097 0.91182 1.25710 0.95306 1.00942 1.00595 1.69897 1.09067 1.29237 1.52465 0.85836 0.77262 0.80924 0.78517 1.21786 1.24236 1.17255 1.17914 0.86667 0.83400 0.76341 1.90710 1.14091 1.87631 1.51792 1.21786 1.00250 0.94707 1.03748 1.22617 0.88912 0.94092 0.94264 1.66656 1.31837 1.00492 1.27272 1.19591 0.85267 0.86765 0.88733 1.84564 1.54440 1.29551 1.60015 1.19045 0.96952 0.96000 1.02569 1.21306 0.96900 0.96895 0.93970 1.21430 0.94558 0.99181 0.98212 1.21534 0.99189 0.91715 0.96898 1.21164 0.96474 1.00949 0.96664 1.18923 0.95312 0.90593 0.94924 0.92821 0.90708 0.90570 0.88781 0.89755 0.89105 0.88704 0.94562 0.93168 0.93187 0.82494 0.70609 0.81465 0.81279 0.82363 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.00 8.25 127.77 1.05 4.05 16 2 N -0.59 -20.54 2.89 -850.99 -2.46 -23.00 16 3 C 0.12 4.27 5.30 86.38 0.46 4.73 16 4 C 0.13 5.01 4.49 45.09 0.20 5.21 16 5 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 6 C -0.12 -3.99 7.86 31.25 0.25 -3.75 16 7 C 0.09 3.49 7.56 86.44 0.65 4.14 16 8 N -0.64 -29.31 3.15 -690.94 -2.18 -31.49 16 9 C -0.21 -11.36 10.50 84.03 0.88 -10.48 16 10 H 0.07 4.00 5.46 -2.91 -0.02 3.99 16 11 C -0.03 -1.77 5.50 84.86 0.47 -1.30 16 12 N -0.96 -59.09 13.97 21.65 0.30 -58.79 16 13 Si 0.94 46.06 24.89 68.60 1.71 47.76 16 14 H -0.29 -14.07 7.09 99.48 0.71 -13.36 16 15 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 16 H -0.25 -11.11 6.69 99.48 0.67 -10.45 16 17 C 0.57 19.74 7.01 86.58 0.61 20.35 16 18 O -0.56 -21.20 14.68 -4.17 -0.06 -21.26 16 19 C -0.20 -6.33 5.18 -18.60 -0.10 -6.42 16 20 C 0.15 4.64 8.94 84.85 0.76 5.40 16 21 N -0.54 -16.43 10.25 -307.29 -3.15 -19.58 16 22 C 0.39 9.36 7.79 85.42 0.67 10.02 16 23 O -0.47 -8.04 12.80 -85.38 -1.09 -9.13 16 24 C -0.14 -3.20 5.75 -21.26 -0.12 -3.32 16 25 C -0.07 -1.03 9.58 22.29 0.21 -0.82 16 26 C -0.12 -1.37 9.95 22.06 0.22 -1.15 16 27 C -0.07 -1.17 9.96 22.09 0.22 -0.95 16 28 C -0.13 -3.24 9.27 22.20 0.21 -3.03 16 29 C 0.01 0.20 5.90 -19.96 -0.12 0.09 16 30 H 0.05 2.09 4.72 -2.39 -0.01 2.08 16 31 H 0.07 2.27 6.21 -2.39 -0.01 2.25 16 32 H 0.08 2.62 7.87 -2.39 -0.02 2.60 16 33 H 0.09 2.94 7.53 -2.39 -0.02 2.92 16 34 H 0.08 3.00 7.83 -2.38 -0.02 2.98 16 35 H 0.09 2.77 8.10 -2.39 -0.02 2.75 16 36 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.04 1.52 3.94 -2.39 -0.01 1.52 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 40 H 0.16 5.34 5.87 -2.91 -0.02 5.32 16 41 H 0.43 2.60 9.06 -74.05 -0.67 1.93 16 42 H 0.17 1.36 7.66 -2.91 -0.02 1.34 16 43 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 44 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.13 3.51 6.21 -2.91 -0.02 3.50 16 Total: -1.00 -75.30 361.62 -0.07 -75.37 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.35 Total: 17.34 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 6.52 Total: 22.77 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -7.48 Total: -132.85 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.15 Total: -30.39 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.71 Total: 47.76 kcal Total: -75.30 -0.07 -75.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085857167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.173 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds