Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47315 * 2 1 4 4 C 1.34224 * 117.00067 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00252 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99924 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.47319 * 180.02562 * 6 4 3 8 8 C 1.46904 * 111.00241 * 66.04333 * 7 6 4 9 9 C 1.50693 * 109.47399 * 199.79954 * 8 7 6 10 10 H 1.08007 * 120.00211 * 355.15187 * 9 8 7 11 11 C 1.37878 * 120.00283 * 175.14486 * 9 8 7 12 12 N 1.31513 * 120.00457 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99651 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47098 * 89.99582 * 13 11 9 15 15 H 1.48501 * 109.46897 * 209.99718 * 13 11 9 16 16 H 1.48497 * 109.46870 * 329.99741 * 13 11 9 17 17 C 1.46892 * 111.00256 * 189.99779 * 7 6 4 18 18 C 1.50705 * 109.47222 * 75.35954 * 17 7 6 19 19 C 1.34419 * 126.48260 * 254.86952 * 18 17 7 20 20 N 1.36625 * 109.97138 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.07496 * 179.97438 * 20 19 18 22 22 C 1.37821 * 109.85572 * 359.97438 * 20 19 18 23 23 C 1.38710 * 133.36311 * 179.71400 * 22 20 19 24 24 C 1.39306 * 119.66374 * 179.86356 * 23 22 20 25 25 C 1.43195 * 119.84334 * 180.21263 * 24 23 22 26 26 N 9.36218 * 125.42592 * 278.84306 * 4 1 2 27 27 C 1.40270 * 120.31942 * 0.43211 * 24 23 22 28 28 C 1.36214 * 120.37538 * 359.80532 * 27 24 23 29 29 C 1.39897 * 119.96598 * 359.97438 * 28 27 24 30 30 H 1.09004 * 109.46979 * 59.99970 * 1 2 3 31 31 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47198 * 300.00417 * 1 2 3 33 33 H 1.08996 * 109.47198 * 239.99583 * 2 1 3 34 34 H 1.09004 * 109.46979 * 120.00030 * 2 1 3 35 35 H 1.08997 * 109.47034 * 59.99875 * 6 4 3 36 36 H 1.08999 * 109.46824 * 299.99668 * 6 4 3 37 37 H 1.09005 * 109.46641 * 319.80012 * 8 7 6 38 38 H 1.09000 * 109.47072 * 79.79842 * 8 7 6 39 39 H 0.96996 * 120.00289 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.47433 * 315.35955 * 17 7 6 41 41 H 1.09005 * 109.47422 * 195.35329 * 17 7 6 42 42 H 1.08004 * 125.01235 * 0.02562 * 19 18 17 43 43 H 1.08002 * 120.17089 * 0.29157 * 23 22 20 44 44 H 1.08002 * 119.81505 * 179.78079 * 27 24 23 45 45 H 1.08001 * 120.01438 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 7 5.3877 2.8606 0.0010 8 6 5.8843 2.2775 -1.2526 9 6 7.2875 1.7676 -1.0482 10 1 7.7919 1.9362 -0.1081 11 6 7.9277 1.0857 -2.0613 12 7 9.1525 0.6412 -1.8832 13 14 7.0556 0.7946 -3.6874 14 1 7.3353 1.9253 -4.6085 15 1 7.5459 -0.4698 -4.2926 16 1 5.5924 0.6967 -3.4538 17 6 5.9841 4.1816 0.2397 18 6 5.8475 4.5385 1.6975 19 6 4.9855 5.4242 2.2261 20 7 5.1508 5.4846 3.5810 21 1 4.6419 6.0533 4.1798 22 6 6.1485 4.6170 3.9700 23 6 6.7074 4.2978 5.1987 24 6 7.7279 3.3520 5.2671 25 6 8.3045 3.0163 6.5341 26 7 8.7631 2.7530 7.5392 27 6 8.1965 2.7303 4.1003 28 6 7.6562 3.0418 2.8893 29 6 6.6276 3.9863 2.8052 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.5844 3.4693 0.8911 36 1 3.5851 3.4697 -0.8888 37 1 5.2376 1.4522 -1.5506 38 1 5.8844 3.0390 -2.0325 39 1 9.6029 0.1618 -2.5960 40 1 5.4700 4.9273 -0.3666 41 1 7.0397 4.1580 -0.0311 42 1 4.2681 6.0026 1.6629 43 1 6.3486 4.7750 6.0987 44 1 8.9905 2.0008 4.1623 45 1 8.0218 2.5598 1.9946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142925992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 18.858664 kcal Electronic energy + Delta-G solvation = -29111.022539 eV Core-core repulsion = 25094.927968 eV Total energy + Delta-G solvation = -4016.094571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24950 -40.06877 -37.73247 -37.09775 -35.82146 -35.68649 -32.60990 -32.10057 -31.67505 -29.78730 -29.53682 -28.75629 -26.87697 -24.26740 -23.45732 -22.92324 -22.37311 -21.25309 -20.16818 -19.23112 -18.51475 -17.46587 -17.29249 -16.89247 -16.33984 -16.03763 -15.84868 -14.95791 -14.66347 -14.49303 -14.26435 -14.02130 -13.96489 -13.74248 -13.64063 -13.49916 -13.38510 -12.93874 -12.71497 -12.54738 -12.45238 -12.34659 -12.19263 -11.95595 -11.66450 -11.50254 -11.40193 -11.31527 -11.07950 -10.78378 -10.67229 -10.35865 -10.22507 -9.92148 -9.70968 -9.52679 -9.17612 -8.49539 -8.17995 -7.60780 -7.47677 -5.97933 -3.92821 0.78432 1.61567 2.54250 2.67865 2.72090 2.90314 3.11146 3.23433 3.31327 3.40098 3.42439 4.02729 4.10811 4.48359 4.72380 4.81683 4.88633 4.93599 4.94819 5.09801 5.14395 5.23439 5.30858 5.34636 5.35639 5.49184 5.55097 5.60037 5.71982 5.74003 5.75271 5.84244 5.90019 6.07183 6.15055 6.38030 6.43811 6.62359 6.72477 6.77517 6.81565 6.87076 6.97673 7.17382 7.49981 7.54723 7.63663 7.82539 7.90829 8.29469 8.69924 9.10728 9.64444 11.15219 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.003998 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.776442 B = 7002.575280 C = 8887.441934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.450 3.550 5 O -0.463 6.463 6 C 0.066 3.934 7 N -0.506 5.506 8 C 0.156 3.844 9 C -0.493 4.493 10 H 0.083 0.917 11 C 0.070 3.930 12 N -0.901 5.901 13 Si 0.869 3.131 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.269 1.269 17 C 0.131 3.869 18 C -0.144 4.144 19 C 0.048 3.952 20 N -0.594 5.594 21 H 0.414 0.586 22 C 0.084 3.916 23 C -0.083 4.083 24 C -0.018 4.018 25 C 0.267 3.733 26 N -0.436 5.436 27 C -0.109 4.109 28 C -0.043 4.043 29 C -0.054 4.054 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.040 0.960 38 H -0.017 1.017 39 H 0.262 0.738 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 10.194 7.113 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.290 6.290 4 C 0.290 3.710 5 O -0.346 6.346 6 C -0.064 4.064 7 N -0.231 5.231 8 C 0.031 3.969 9 C -0.531 4.531 10 H 0.101 0.899 11 C -0.131 4.131 12 N -0.540 5.540 13 Si 0.697 3.303 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.194 1.194 17 C 0.003 3.997 18 C -0.151 4.151 19 C -0.079 4.079 20 N -0.198 5.198 21 H 0.251 0.749 22 C -0.023 4.023 23 C -0.107 4.107 24 C -0.022 4.022 25 C -0.047 4.047 26 N -0.111 5.111 27 C -0.131 4.131 28 C -0.062 4.062 29 C -0.060 4.060 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.001 0.999 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.122 0.878 42 H 0.186 0.814 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.904 9.106 9.000 18.900 hybrid contribution -1.148 0.397 -1.678 2.071 sum -15.052 9.503 7.322 19.248 Atomic orbital electron populations 1.21782 0.93106 1.02622 1.03168 1.22907 0.94808 0.80936 1.02607 1.86455 1.25552 1.31843 1.85190 1.23771 0.80007 0.93429 0.73827 1.90768 1.59550 1.42457 1.41806 1.21524 0.91996 0.89948 1.02907 1.61662 1.00509 1.21665 1.39301 1.20396 0.98122 0.93932 0.84452 1.20892 0.95942 1.34596 1.01668 0.89937 1.24819 0.94717 0.95415 0.98136 1.69870 1.12114 1.38759 1.33280 0.86958 0.80592 0.77870 0.84861 1.20487 1.21280 1.19417 1.20385 1.02066 0.88421 0.88780 1.20469 0.99136 1.00168 0.95362 1.21675 1.01584 1.02089 0.82558 1.41575 1.33061 1.37814 1.07322 0.74935 1.17923 0.93771 0.95975 0.94628 1.19734 0.97006 0.98989 0.94940 1.15575 0.98904 1.00998 0.86767 1.25728 0.93143 0.93179 0.92669 1.81202 1.09412 1.09110 1.11419 1.20614 1.01223 1.00697 0.90535 1.20578 0.93115 0.94136 0.98336 1.19229 0.97420 0.97673 0.91665 0.91699 0.90563 0.91710 0.91449 0.91387 0.87878 0.91983 0.94164 0.99916 0.92818 0.94632 0.87812 0.81390 0.85820 0.85130 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -5.55 10.22 -39.24 -0.40 -5.95 16 4 C 0.45 7.96 7.47 36.01 0.27 8.23 16 5 O -0.46 -10.23 14.30 -18.75 -0.27 -10.50 16 6 C 0.07 1.01 5.39 -4.98 -0.03 0.98 16 7 N -0.51 -9.51 4.08 -238.97 -0.98 -10.49 16 8 C 0.16 3.59 3.32 -4.98 -0.02 3.58 16 9 C -0.49 -13.33 9.09 -34.44 -0.31 -13.65 16 10 H 0.08 2.37 7.27 -52.48 -0.38 1.99 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 13 Si 0.87 21.45 27.57 -169.99 -4.69 16.76 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 16 H -0.27 -6.54 6.40 56.52 0.36 -6.18 16 17 C 0.13 2.05 5.35 -4.98 -0.03 2.03 16 18 C -0.14 -1.95 5.17 -102.73 -0.53 -2.48 16 19 C 0.05 0.47 11.29 -16.77 -0.19 0.28 16 20 N -0.59 -5.35 6.07 -10.68 -0.06 -5.41 16 21 H 0.41 2.27 8.96 -40.82 -0.37 1.91 16 22 C 0.08 1.00 7.26 -84.00 -0.61 0.39 16 23 C -0.08 -0.93 9.77 -39.01 -0.38 -1.31 16 24 C -0.02 -0.23 5.74 -106.81 -0.61 -0.84 16 25 C 0.27 3.62 15.30 -22.48 -0.34 3.28 16 26 N -0.44 -6.67 18.54 41.83 0.78 -5.90 16 27 C -0.11 -1.51 9.67 -39.55 -0.38 -1.89 16 28 C -0.04 -0.68 10.03 -39.69 -0.40 -1.08 16 29 C -0.05 -0.79 6.35 -105.04 -0.67 -1.46 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 35 H 0.10 1.31 7.06 -51.93 -0.37 0.94 16 36 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 37 H 0.04 1.01 4.57 -51.93 -0.24 0.77 16 38 H -0.02 -0.37 7.67 -51.93 -0.40 -0.77 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.04 0.47 7.99 -51.93 -0.42 0.05 16 41 H 0.10 1.88 7.27 -51.93 -0.38 1.50 16 42 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.15 2.68 7.32 -52.49 -0.38 2.29 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -34.36 387.91 -8.62 -42.98 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.90 Total: 0.90 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -3.71 Total: -1.97 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.51 Total: -48.06 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.67 Total: -16.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.69 Total: 16.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.36 -8.62 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142925992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.834 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds