Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47309 * 126.68818 * 2 1 4 4 C 1.51585 * 103.59064 * 180.02562 * 3 2 1 5 5 O 1.21234 * 127.15504 * 180.02562 * 4 3 2 6 6 N 1.34763 * 105.68455 * 359.97438 * 4 3 2 7 7 C 1.46506 * 124.17431 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.46851 * 90.02894 * 7 6 4 9 9 O 1.21281 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00043 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00192 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47219 * 179.97438 * 11 10 8 13 13 N 1.46897 * 109.46977 * 179.97438 * 12 11 10 14 14 C 1.46907 * 110.99744 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47009 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00051 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00049 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00063 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99942 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00134 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00576 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99844 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47064 * 90.00063 * 22 20 18 24 24 H 1.48498 * 109.47240 * 210.00286 * 22 20 18 25 25 H 1.48497 * 109.47137 * 330.00183 * 22 20 18 26 26 C 1.33784 * 111.64787 * 0.23042 * 6 4 3 27 27 O 1.21539 * 123.77572 * 179.76923 * 26 6 4 28 28 H 1.08997 * 109.47182 * 90.00246 * 1 2 3 29 29 H 1.09005 * 109.47073 * 210.00531 * 1 2 3 30 30 H 1.08999 * 109.47477 * 329.99687 * 1 2 3 31 31 H 1.09003 * 110.59923 * 61.50601 * 3 2 1 32 32 H 1.09001 * 110.59956 * 298.56121 * 3 2 1 33 33 H 1.08994 * 109.46947 * 210.02315 * 7 6 4 34 34 H 1.08997 * 109.47271 * 330.02831 * 7 6 4 35 35 H 0.97000 * 119.99842 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47404 * 299.99483 * 11 10 8 37 37 H 1.09001 * 109.47428 * 59.99513 * 11 10 8 38 38 H 1.08994 * 109.47108 * 299.99860 * 12 11 10 39 39 H 1.08997 * 109.46890 * 60.00242 * 12 11 10 40 40 H 1.00903 * 111.00094 * 56.05357 * 13 12 11 41 41 H 1.08999 * 109.46647 * 299.99661 * 14 13 12 42 42 H 1.08990 * 109.47159 * 60.00108 * 14 13 12 43 43 H 0.96995 * 119.99842 * 359.97438 * 17 15 14 44 44 H 0.96991 * 120.00511 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5866 -0.0007 5 8 4.7921 1.1881 -0.0004 6 7 3.5656 -0.7498 -0.0004 7 6 4.6614 -1.7222 -0.0014 8 6 5.0380 -2.0560 1.4192 9 8 4.4494 -1.5328 2.3415 10 7 6.0295 -2.9352 1.6646 11 6 6.3960 -3.2593 3.0455 12 6 7.5403 -4.2750 3.0445 13 7 7.9082 -4.5994 4.4291 14 6 9.0069 -5.5738 4.4674 15 6 9.3554 -5.8819 5.9008 16 8 8.7486 -5.3425 6.8019 17 7 10.3421 -6.7560 6.1815 18 6 10.6595 -7.0359 7.4855 19 1 10.1192 -6.5556 8.2879 20 6 11.6764 -7.9375 7.7749 21 7 11.9810 -8.2055 9.0249 22 14 12.6106 -8.7688 6.3871 23 1 13.7872 -7.9418 6.0175 24 1 13.0680 -10.1097 6.8320 25 1 11.7190 -8.9157 5.2087 26 6 2.2689 -1.0787 -0.0046 27 8 1.8623 -2.2241 -0.0093 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 2.1839 1.7796 0.8967 32 1 2.1831 1.7802 -0.8962 33 1 4.3420 -2.6289 -0.5151 34 1 5.5235 -1.2976 -0.5156 35 1 6.5005 -3.3534 0.9269 36 1 6.7152 -2.3524 3.5591 37 1 5.5341 -3.6840 3.5600 38 1 7.2208 -5.1817 2.5310 39 1 8.4023 -3.8505 2.5299 40 1 7.1093 -4.9344 4.9465 41 1 8.6978 -6.4899 3.9640 42 1 9.8788 -5.1582 3.9624 43 1 10.8277 -7.1871 5.4609 44 1 12.6906 -8.8351 9.2269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150332481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = -124.597039 kcal Electronic energy + Delta-G solvation = -28304.726175 eV Core-core repulsion = 23871.561634 eV Total energy + Delta-G solvation = -4433.164541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.44007 -40.76758 -40.29790 -39.75267 -37.58782 -37.31579 -36.23029 -36.03239 -35.32010 -33.75657 -31.76818 -30.46635 -28.73967 -27.65502 -27.03287 -25.33379 -23.55275 -23.19275 -22.27952 -21.30647 -21.11499 -20.30281 -19.02173 -18.69836 -17.90796 -17.81386 -17.50723 -17.30124 -17.17450 -16.75161 -16.49889 -16.36642 -15.89977 -15.65793 -15.50605 -15.39485 -15.14819 -15.08056 -14.85461 -14.68759 -14.41982 -14.26396 -13.97169 -13.48606 -13.43956 -13.34410 -13.24068 -12.97240 -12.62402 -12.42794 -12.41075 -12.09996 -11.97474 -11.79371 -11.51743 -11.40640 -10.80528 -10.46795 -10.26478 -10.25526 -9.99381 -9.39924 -8.41521 -6.03210 0.56509 0.90170 1.30501 1.36785 1.40322 1.45641 1.68986 1.94965 1.98942 2.13013 2.23646 2.79899 3.00085 3.14669 3.40802 3.64841 3.65310 3.86281 4.06335 4.10236 4.14442 4.16796 4.22922 4.30326 4.36045 4.44425 4.45165 4.58204 4.67449 4.86858 4.88781 4.90784 4.94429 5.23768 5.37092 5.51876 5.86567 5.98303 5.99632 6.24797 6.27738 6.37813 6.59102 6.87487 6.92669 7.07058 7.38931 7.96160 8.76242 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031878 B = 0.001484 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.150877 B =18860.064461 C =18959.592093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.623 5.623 3 C 0.073 3.927 4 C 0.521 3.479 5 O -0.498 6.498 6 N -0.569 5.569 7 C 0.101 3.899 8 C 0.494 3.506 9 O -0.581 6.581 10 N -0.704 5.704 11 C 0.127 3.873 12 C 0.060 3.940 13 N -0.692 5.692 14 C 0.066 3.934 15 C 0.445 3.555 16 O -0.618 6.618 17 N -0.589 5.589 18 C -0.332 4.332 19 H 0.052 0.948 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.228 1.228 26 C 0.694 3.306 27 O -0.582 6.582 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.423 0.577 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.345 0.655 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.391 0.609 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 15.948 -32.947 41.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.361 5.361 3 C -0.051 4.051 4 C 0.310 3.690 5 O -0.370 6.370 6 N -0.313 5.313 7 C -0.024 4.024 8 C 0.279 3.721 9 O -0.461 6.461 10 N -0.358 5.358 11 C 0.002 3.998 12 C -0.069 4.069 13 N -0.325 5.325 14 C -0.066 4.066 15 C 0.233 3.767 16 O -0.502 6.502 17 N -0.231 5.231 18 C -0.462 4.462 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.788 3.212 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.151 1.151 26 C 0.396 3.604 27 O -0.459 6.459 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.139 0.861 43 H 0.227 0.773 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.036 16.804 -31.472 40.438 hybrid contribution 0.534 -1.744 0.053 1.824 sum -18.501 15.061 -31.419 39.450 Atomic orbital electron populations 1.21808 0.72113 1.04708 1.03880 1.47685 1.07748 1.04849 1.75808 1.22761 0.83149 0.89610 1.09579 1.21516 0.92808 0.81656 0.72996 1.90825 1.32421 1.66359 1.47375 1.46012 1.07653 1.09546 1.68128 1.21653 0.91273 0.95757 0.93748 1.21382 0.79587 0.78797 0.92291 1.90732 1.54148 1.53555 1.47640 1.45561 1.36375 1.44534 1.09365 1.21071 0.97150 0.98913 0.82651 1.22072 0.97844 0.97877 0.89074 1.59888 1.11930 1.46947 1.13733 1.21629 0.97192 0.96311 0.91503 1.21075 0.81835 0.81318 0.92497 1.90560 1.54921 1.54559 1.50194 1.41998 1.33562 1.40746 1.06756 1.19014 1.18255 1.25165 0.83716 0.92937 1.26165 0.97708 0.97371 1.00184 1.69810 1.31613 1.35684 1.20464 0.85324 0.79329 0.78212 0.78371 1.18113 1.20111 1.15121 1.16054 0.81064 0.85716 0.77596 1.90952 1.77380 1.20481 1.57080 0.90112 0.91703 0.86953 0.83670 0.81773 0.83390 0.82666 0.73833 0.92569 0.92993 0.91945 0.88187 0.83646 0.89832 0.86118 0.77298 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.54 11.17 127.77 1.43 1.97 16 2 N -0.62 -6.69 3.42 -866.95 -2.96 -9.66 16 3 C 0.07 0.43 7.66 85.76 0.66 1.08 16 4 C 0.52 7.86 8.31 87.94 0.73 8.59 16 5 O -0.50 -10.40 17.76 -2.89 -0.05 -10.46 16 6 N -0.57 -9.61 2.09 -777.22 -1.63 -11.23 16 7 C 0.10 1.33 6.18 85.63 0.53 1.86 16 8 C 0.49 10.38 7.90 87.66 0.69 11.08 16 9 O -0.58 -18.52 16.43 -3.03 -0.05 -18.57 16 10 N -0.70 -10.89 5.56 -463.06 -2.57 -13.46 16 11 C 0.13 2.69 5.93 86.38 0.51 3.21 16 12 C 0.06 1.07 5.80 86.31 0.50 1.57 16 13 N -0.69 -19.59 6.13 -517.93 -3.17 -22.76 16 14 C 0.07 1.88 6.17 85.56 0.53 2.41 16 15 C 0.44 19.96 7.82 87.66 0.69 20.65 16 16 O -0.62 -34.81 15.78 -3.08 -0.05 -34.86 16 17 N -0.59 -27.54 5.09 -306.98 -1.56 -29.10 16 18 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 19 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 20 C -0.02 -0.88 5.50 84.92 0.47 -0.41 16 21 N -0.94 -56.71 13.96 21.66 0.30 -56.41 16 22 Si 0.97 38.32 27.74 68.60 1.90 40.22 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 26 C 0.69 13.23 8.31 179.44 1.49 14.72 16 27 O -0.58 -15.37 17.15 -3.84 -0.07 -15.43 16 28 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.06 0.58 8.04 -2.38 -0.02 0.56 16 30 H 0.11 -0.16 8.14 -2.39 -0.02 -0.17 16 31 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.15 1.33 7.85 -2.39 -0.02 1.32 16 34 H 0.16 1.11 8.00 -2.39 -0.02 1.09 16 35 H 0.42 2.78 8.47 -92.71 -0.79 1.99 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.34 10.81 8.43 -89.69 -0.76 10.06 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 44 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -100.58 386.42 -1.89 -102.47 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -1.06 Total: 31.28 kcal Atomic # 6 Polarization: 38.90 SS G_CDS: 9.08 Total: 47.97 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -11.60 Total: -142.62 kcal Atomic # 8 Polarization: -79.10 SS G_CDS: -0.22 Total: -79.32 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -100.58 -1.89 -102.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150332481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.126 kcal (2) G-P(sol) polarization free energy of solvation -100.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds