Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45207 * 109.46952 * 2 1 4 4 C 1.34233 * 116.99858 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99630 * 179.97438 * 4 3 2 7 7 N 1.46503 * 109.46605 * 179.97438 * 6 4 3 8 8 C 1.46494 * 119.99836 * 269.99768 * 7 6 4 9 9 C 1.50708 * 109.47222 * 270.00184 * 8 7 6 10 10 H 1.07994 * 119.99812 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99752 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00503 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99728 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46927 * 89.99950 * 13 11 9 15 15 H 1.48498 * 109.46851 * 209.99756 * 13 11 9 16 16 H 1.48493 * 109.47105 * 329.99794 * 13 11 9 17 17 C 1.38937 * 119.99550 * 90.00429 * 7 6 4 18 18 C 1.39424 * 119.98015 * 184.99566 * 17 7 6 19 19 N 1.31793 * 120.01721 * 179.97438 * 18 17 7 20 20 C 1.33069 * 119.99238 * 359.97438 * 19 18 17 21 21 C 1.48314 * 120.01536 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.12189 * 0.02562 * 21 20 19 23 23 C 1.38006 * 119.87315 * 179.97438 * 22 21 20 24 24 C 1.38335 * 120.12595 * 359.97438 * 23 22 21 25 25 C 1.38329 * 120.25028 * 0.02562 * 24 23 22 26 26 C 1.38011 * 120.12378 * 359.97438 * 25 24 23 27 27 C 1.39291 * 119.97387 * 0.27688 * 20 19 18 28 28 N 1.32084 * 119.97880 * 359.41133 * 27 20 19 29 29 H 1.08995 * 109.47591 * 60.00239 * 1 2 3 30 30 H 1.09007 * 109.46737 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46929 * 299.99605 * 1 2 3 32 32 H 1.08994 * 109.47300 * 240.00105 * 2 1 3 33 33 H 1.08995 * 109.47591 * 119.99761 * 2 1 3 34 34 H 1.09000 * 109.46913 * 59.99798 * 6 4 3 35 35 H 1.08993 * 109.47087 * 299.99822 * 6 4 3 36 36 H 1.08999 * 109.47723 * 30.00478 * 8 7 6 37 37 H 1.08999 * 109.47031 * 150.00539 * 8 7 6 38 38 H 0.96998 * 120.00078 * 179.97438 * 12 11 9 39 39 H 1.07995 * 119.98954 * 359.97438 * 18 17 7 40 40 H 1.08000 * 120.06338 * 359.95511 * 22 21 20 41 41 H 1.08000 * 119.94216 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.87264 * 179.74766 * 24 23 22 43 43 H 1.07991 * 119.93593 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.05917 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.01362 * 179.70190 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 7 5.3836 2.8608 -0.0010 8 6 6.1150 2.8231 1.2677 9 6 6.4402 4.2291 1.7021 10 1 6.1324 5.0669 1.0941 11 6 7.1306 4.4457 2.8757 12 7 7.5049 3.4255 3.6164 13 14 7.5330 6.1885 3.4145 14 1 6.4290 6.7133 4.2578 15 1 8.7951 6.1857 4.1969 16 1 7.6947 7.0519 2.2173 17 6 6.0774 2.8240 -1.2043 18 6 7.4602 2.6462 -1.2061 19 7 8.1189 2.6106 -2.3470 20 6 7.4639 2.7440 -3.4977 21 6 8.2046 2.7034 -4.7820 22 6 9.5870 2.5253 -4.7869 23 6 10.2710 2.4879 -5.9849 24 6 9.5871 2.6262 -7.1794 25 6 8.2152 2.8033 -7.1806 26 6 7.5209 2.8423 -5.9885 27 6 6.0831 2.9268 -3.4953 28 7 5.4232 2.9561 -2.3515 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 3.5849 3.4699 0.8888 35 1 3.5844 3.4694 -0.8911 36 1 5.4999 2.3412 2.0276 37 1 7.0393 2.2602 1.1377 38 1 7.9910 3.5779 4.4419 39 1 7.9917 2.5376 -0.2722 40 1 10.1218 2.4171 -3.8549 41 1 11.3422 2.3503 -5.9900 42 1 10.1270 2.6004 -8.1144 43 1 7.6865 2.9104 -8.1161 44 1 6.4498 2.9810 -5.9906 45 1 5.5515 3.0399 -4.4286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -2.776102 kcal Electronic energy + Delta-G solvation = -28626.394673 eV Core-core repulsion = 24609.361948 eV Total energy + Delta-G solvation = -4017.032725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.72827 -40.08530 -38.80513 -36.93915 -35.83473 -33.76320 -32.75058 -32.24778 -31.73377 -30.85709 -29.31226 -28.51623 -26.23347 -24.47584 -23.89365 -23.17402 -22.30027 -21.80801 -21.22262 -20.26347 -17.61332 -17.50142 -17.20620 -16.89430 -16.56308 -16.28272 -15.88031 -15.71598 -14.79071 -14.53518 -14.45654 -14.39044 -14.24969 -13.98334 -13.60447 -13.29983 -13.29035 -12.85064 -12.72410 -12.60615 -12.43369 -12.14040 -11.65141 -11.58164 -11.51798 -11.31929 -11.15408 -11.04637 -10.93822 -10.86525 -10.74699 -10.43168 -10.38856 -10.23193 -10.00393 -9.54348 -8.90019 -8.70587 -8.64212 -8.55515 -6.97695 -6.23085 -4.34570 0.84648 1.46159 1.60543 2.07004 2.54993 2.77552 3.19878 3.27716 3.30935 3.52659 3.83239 4.27495 4.44103 4.44858 4.65621 4.85055 4.89028 4.89790 4.98017 5.03878 5.05689 5.09990 5.14824 5.24047 5.27994 5.46107 5.48549 5.58385 5.64988 5.71090 5.74194 5.75274 5.88216 5.91114 6.07552 6.14314 6.39220 6.51956 6.58943 6.64183 6.67670 6.87812 7.01801 7.05894 7.32999 7.69662 7.76960 7.92044 8.05653 8.09247 8.39630 8.73274 9.33721 10.81282 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006878 B = 0.003800 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4069.841677 B = 7365.814470 C =10797.928476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.444 3.556 5 O -0.499 6.499 6 C 0.137 3.863 7 N -0.556 5.556 8 C 0.251 3.749 9 C -0.545 4.545 10 H 0.064 0.936 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.900 3.100 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.379 3.621 18 C 0.023 3.977 19 N -0.398 5.398 20 C 0.010 3.990 21 C -0.010 4.010 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.117 4.117 27 C 0.117 3.883 28 N -0.520 5.520 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.267 0.733 39 H 0.179 0.821 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -3.178 -14.767 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.284 3.716 5 O -0.385 6.385 6 C 0.010 3.990 7 N -0.264 5.264 8 C 0.133 3.867 9 C -0.583 4.583 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.727 3.273 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.197 1.197 17 C 0.139 3.861 18 C -0.149 4.149 19 N -0.111 5.111 20 C -0.128 4.128 21 C -0.012 4.012 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.136 4.136 27 C -0.044 4.044 28 N -0.242 5.242 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.196 0.804 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.934 -3.558 -14.355 15.936 hybrid contribution 0.205 0.666 0.483 0.848 sum -5.729 -2.892 -13.872 15.285 Atomic orbital electron populations 1.21787 0.92874 1.02649 1.03439 1.22935 0.95084 0.80918 1.02360 1.86510 1.25099 1.31857 1.84519 1.24935 0.80255 0.94171 0.72198 1.90652 1.60322 1.43027 1.44530 1.20818 0.81900 0.89576 1.06680 1.46845 1.03127 1.72172 1.04220 1.19572 0.92294 0.97746 0.77100 1.21477 1.37584 0.92130 1.07124 0.91784 1.24939 0.95078 0.97589 0.96025 1.69926 1.38079 1.30296 1.14244 0.86454 0.77981 0.84031 0.78795 1.20437 1.20943 1.19716 1.19469 0.90396 0.89505 0.86705 1.23357 0.91038 1.03208 0.97333 1.68158 1.38527 1.06974 0.97439 1.20120 0.91837 1.08685 0.92143 1.18368 0.93151 0.99341 0.90293 1.21331 0.93504 0.97824 0.98598 1.21119 0.99865 1.00584 0.92411 1.21155 0.94542 1.01008 0.97931 1.20980 0.94427 1.00866 0.97573 1.21145 0.99830 1.01037 0.91602 1.23210 0.91657 0.93718 0.95864 1.67887 1.39074 1.19839 0.97449 0.91571 0.90559 0.91471 0.91639 0.91431 0.85876 0.86269 0.94076 0.93852 0.92297 0.80430 0.84881 0.86106 0.86404 0.86094 0.85850 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.51 10.22 -39.27 -0.40 -5.91 16 4 C 0.44 7.91 8.03 36.01 0.29 8.20 16 5 O -0.50 -10.50 16.18 -18.75 -0.30 -10.81 16 6 C 0.14 2.38 6.07 -5.19 -0.03 2.35 16 7 N -0.56 -11.46 2.06 -176.42 -0.36 -11.82 16 8 C 0.25 5.93 5.01 -5.19 -0.03 5.91 16 9 C -0.54 -13.80 9.39 -34.44 -0.32 -14.12 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 13 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.38 7.73 7.37 -154.70 -1.14 6.59 16 18 C 0.02 0.47 10.42 -17.13 -0.18 0.29 16 19 N -0.40 -7.70 9.59 -9.42 -0.09 -7.79 16 20 C 0.01 0.17 6.72 -82.79 -0.56 -0.39 16 21 C -0.01 -0.15 5.88 -104.90 -0.62 -0.76 16 22 C -0.09 -1.32 9.58 -39.24 -0.38 -1.69 16 23 C -0.12 -1.40 10.03 -39.63 -0.40 -1.80 16 24 C -0.13 -1.32 10.04 -39.51 -0.40 -1.72 16 25 C -0.12 -1.25 10.03 -39.63 -0.40 -1.65 16 26 C -0.12 -1.40 9.43 -39.24 -0.37 -1.77 16 27 C 0.12 1.90 10.60 -17.05 -0.18 1.72 16 28 N -0.52 -9.65 9.23 -11.97 -0.11 -9.76 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.12 1.98 8.07 -51.93 -0.42 1.56 16 35 H 0.12 1.88 7.31 -51.93 -0.38 1.50 16 36 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.04 1.08 5.99 -51.93 -0.31 0.77 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.18 3.79 6.02 -52.49 -0.32 3.47 16 40 H 0.13 1.95 7.55 -52.49 -0.40 1.56 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.21 6.20 -52.49 -0.33 0.89 16 45 H 0.16 1.96 6.19 -52.48 -0.32 1.64 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -30.63 388.35 -9.71 -40.33 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.82 Total: 5.23 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -4.19 Total: 2.87 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.17 Total: -52.86 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.70 Total: -16.72 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.63 -9.71 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.558 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds