Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45207 * 109.46952 * 2 1 4 4 C 1.34233 * 116.99858 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99630 * 179.97438 * 4 3 2 7 7 N 1.46503 * 109.46605 * 179.97438 * 6 4 3 8 8 C 1.46494 * 119.99836 * 269.99768 * 7 6 4 9 9 C 1.50708 * 109.47222 * 270.00184 * 8 7 6 10 10 H 1.07994 * 119.99812 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99752 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00503 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99728 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46927 * 89.99950 * 13 11 9 15 15 H 1.48498 * 109.46851 * 209.99756 * 13 11 9 16 16 H 1.48493 * 109.47105 * 329.99794 * 13 11 9 17 17 C 1.38937 * 119.99550 * 90.00429 * 7 6 4 18 18 C 1.39424 * 119.98015 * 184.99566 * 17 7 6 19 19 N 1.31793 * 120.01721 * 179.97438 * 18 17 7 20 20 C 1.33069 * 119.99238 * 359.97438 * 19 18 17 21 21 C 1.48314 * 120.01536 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.12189 * 0.02562 * 21 20 19 23 23 C 1.38006 * 119.87315 * 179.97438 * 22 21 20 24 24 C 1.38335 * 120.12595 * 359.97438 * 23 22 21 25 25 C 1.38329 * 120.25028 * 0.02562 * 24 23 22 26 26 C 1.38011 * 120.12378 * 359.97438 * 25 24 23 27 27 C 1.39291 * 119.97387 * 0.27688 * 20 19 18 28 28 N 1.32084 * 119.97880 * 359.41133 * 27 20 19 29 29 H 1.08995 * 109.47591 * 60.00239 * 1 2 3 30 30 H 1.09007 * 109.46737 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46929 * 299.99605 * 1 2 3 32 32 H 1.08994 * 109.47300 * 240.00105 * 2 1 3 33 33 H 1.08995 * 109.47591 * 119.99761 * 2 1 3 34 34 H 1.09000 * 109.46913 * 59.99798 * 6 4 3 35 35 H 1.08993 * 109.47087 * 299.99822 * 6 4 3 36 36 H 1.08999 * 109.47723 * 30.00478 * 8 7 6 37 37 H 1.08999 * 109.47031 * 150.00539 * 8 7 6 38 38 H 0.96998 * 120.00078 * 179.97438 * 12 11 9 39 39 H 1.07995 * 119.98954 * 359.97438 * 18 17 7 40 40 H 1.08000 * 120.06338 * 359.95511 * 22 21 20 41 41 H 1.08000 * 119.94216 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.87264 * 179.74766 * 24 23 22 43 43 H 1.07991 * 119.93593 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.05917 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.01362 * 179.70190 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 7 5.3836 2.8608 -0.0010 8 6 6.1150 2.8231 1.2677 9 6 6.4402 4.2291 1.7021 10 1 6.1324 5.0669 1.0941 11 6 7.1306 4.4457 2.8757 12 7 7.5049 3.4255 3.6164 13 14 7.5330 6.1885 3.4145 14 1 6.4290 6.7133 4.2578 15 1 8.7951 6.1857 4.1969 16 1 7.6947 7.0519 2.2173 17 6 6.0774 2.8240 -1.2043 18 6 7.4602 2.6462 -1.2061 19 7 8.1189 2.6106 -2.3470 20 6 7.4639 2.7440 -3.4977 21 6 8.2046 2.7034 -4.7820 22 6 9.5870 2.5253 -4.7869 23 6 10.2710 2.4879 -5.9849 24 6 9.5871 2.6262 -7.1794 25 6 8.2152 2.8033 -7.1806 26 6 7.5209 2.8423 -5.9885 27 6 6.0831 2.9268 -3.4953 28 7 5.4232 2.9561 -2.3515 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 3.5849 3.4699 0.8888 35 1 3.5844 3.4694 -0.8911 36 1 5.4999 2.3412 2.0276 37 1 7.0393 2.2602 1.1377 38 1 7.9910 3.5779 4.4419 39 1 7.9917 2.5376 -0.2722 40 1 10.1218 2.4171 -3.8549 41 1 11.3422 2.3503 -5.9900 42 1 10.1270 2.6004 -8.1144 43 1 7.6865 2.9104 -8.1161 44 1 6.4498 2.9810 -5.9906 45 1 5.5515 3.0399 -4.4286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = -17.949839 kcal Electronic energy + Delta-G solvation = -28627.052656 eV Core-core repulsion = 24609.361948 eV Total energy + Delta-G solvation = -4017.690708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15191 -41.44967 -39.80738 -38.33963 -37.30688 -35.33583 -34.57529 -33.43682 -32.71511 -31.77248 -30.65108 -30.12735 -27.76569 -25.93486 -25.32764 -24.39737 -23.50419 -22.90094 -22.43564 -21.65234 -19.09336 -18.79222 -18.66625 -18.46432 -18.07771 -17.55545 -17.17597 -16.92846 -16.51991 -15.99559 -15.64461 -15.55409 -15.39013 -15.18568 -15.01508 -14.69670 -14.28099 -14.19892 -13.79871 -13.72799 -13.63288 -13.43232 -13.29020 -12.96998 -12.83399 -12.63022 -12.55312 -12.47940 -12.44604 -12.15034 -12.09762 -11.95472 -11.87771 -11.61304 -11.55874 -11.07931 -10.66996 -10.07528 -9.83243 -9.79417 -8.51719 -8.15145 -6.41550 -0.35266 0.15216 0.56264 0.87674 1.13411 1.39569 1.41527 1.46295 1.53838 2.05511 2.38398 2.72408 3.05096 3.16581 3.17337 3.32325 3.51067 3.75685 3.85830 3.96484 4.07872 4.08966 4.13448 4.17032 4.25206 4.31153 4.37332 4.38631 4.58999 4.65615 4.78022 4.79002 4.84029 4.91608 5.01024 5.09646 5.12021 5.22795 5.29111 5.40558 5.56116 5.62246 5.67377 5.67992 5.79677 5.94975 6.13264 6.22250 6.50827 6.71501 6.71652 6.94854 7.30632 8.81110 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006878 B = 0.003800 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4069.841677 B = 7365.814470 C =10797.928476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.450 3.550 5 O -0.538 6.538 6 C 0.137 3.863 7 N -0.567 5.567 8 C 0.272 3.728 9 C -0.547 4.547 10 H 0.061 0.939 11 C 0.020 3.980 12 N -0.922 5.922 13 Si 0.964 3.036 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.360 3.640 18 C -0.007 4.007 19 N -0.415 5.415 20 C 0.017 3.983 21 C -0.044 4.044 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.113 4.113 27 C 0.120 3.880 28 N -0.515 5.515 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.269 0.731 39 H 0.155 0.845 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -2.123 -18.389 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.292 3.708 5 O -0.428 6.428 6 C 0.011 3.989 7 N -0.276 5.276 8 C 0.152 3.848 9 C -0.585 4.585 10 H 0.079 0.921 11 C -0.180 4.180 12 N -0.561 5.561 13 Si 0.789 3.211 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.196 1.196 17 C 0.123 3.877 18 C -0.176 4.176 19 N -0.128 5.128 20 C -0.122 4.122 21 C -0.046 4.046 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.042 4.042 28 N -0.238 5.238 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.172 0.828 40 H 0.130 0.870 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.175 0.825 44 H 0.165 0.835 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.337 -2.498 -17.958 19.559 hybrid contribution 0.684 0.259 1.288 1.481 sum -6.654 -2.239 -16.670 18.088 Atomic orbital electron populations 1.21807 0.89602 1.04450 1.03964 1.23288 0.97571 0.79405 1.01975 1.86506 1.23368 1.33651 1.83766 1.24965 0.80883 0.93810 0.71148 1.90637 1.61397 1.44172 1.46559 1.20994 0.80141 0.89739 1.08018 1.46563 1.04219 1.73508 1.03317 1.19034 0.91199 0.96467 0.78137 1.21672 1.37200 0.92670 1.07007 0.92067 1.25730 0.94951 1.01224 0.96140 1.70039 1.39000 1.32293 1.14739 0.85463 0.77901 0.79475 0.78295 1.19319 1.20811 1.19630 1.19429 0.90255 0.90798 0.87244 1.23036 0.91530 1.05875 0.97207 1.68125 1.39230 1.07504 0.97926 1.20746 0.92750 1.06286 0.92440 1.18452 0.93486 1.02558 0.90071 1.21343 0.93747 0.99250 0.99046 1.21370 1.00970 1.00216 0.91997 1.21619 0.94944 0.98468 0.98565 1.21435 0.94614 0.99180 0.98304 1.21442 1.01071 0.99752 0.90909 1.23952 0.91622 0.92003 0.96613 1.67941 1.39046 1.19345 0.97419 0.90817 0.88093 0.91125 0.91864 0.92150 0.84871 0.84345 0.96254 0.96276 0.92202 0.82807 0.87042 0.84268 0.83106 0.82535 0.83524 0.77704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.26 6.19 71.98 0.45 1.70 16 3 O -0.36 -10.74 10.22 -51.45 -0.53 -11.26 16 4 C 0.45 16.41 8.03 71.24 0.57 16.98 16 5 O -0.54 -23.65 16.18 21.98 0.36 -23.30 16 6 C 0.14 4.85 6.07 85.63 0.52 5.37 16 7 N -0.57 -24.59 2.06 -712.07 -1.47 -26.05 16 8 C 0.27 13.74 5.01 85.64 0.43 14.17 16 9 C -0.55 -28.89 9.39 25.60 0.24 -28.65 16 10 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 11 C 0.02 1.07 5.46 84.65 0.46 1.54 16 12 N -0.92 -52.34 13.29 21.45 0.28 -52.06 16 13 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.36 15.35 7.37 133.06 0.98 16.33 16 18 C -0.01 -0.31 10.42 84.98 0.89 0.58 16 19 N -0.41 -16.93 9.59 -183.71 -1.76 -18.70 16 20 C 0.02 0.60 6.72 41.89 0.28 0.88 16 21 C -0.04 -1.25 5.88 -20.05 -0.12 -1.37 16 22 C -0.11 -3.20 9.58 22.49 0.22 -2.99 16 23 C -0.13 -2.67 10.03 22.24 0.22 -2.45 16 24 C -0.12 -1.94 10.04 22.31 0.22 -1.71 16 25 C -0.12 -1.89 10.03 22.24 0.22 -1.66 16 26 C -0.11 -2.30 9.43 22.49 0.21 -2.09 16 27 C 0.12 3.75 10.60 84.91 0.90 4.65 16 28 N -0.52 -19.00 9.23 -191.79 -1.77 -20.77 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.06 1.56 8.13 -2.39 -0.02 1.55 16 34 H 0.13 4.37 8.07 -2.39 -0.02 4.36 16 35 H 0.14 4.32 7.31 -2.39 -0.02 4.30 16 36 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 37 H 0.02 1.06 5.99 -2.39 -0.01 1.04 16 38 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.15 7.38 6.02 -2.91 -0.02 7.36 16 40 H 0.11 3.49 7.55 -2.91 -0.02 3.46 16 41 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.16 1.44 8.06 -2.92 -0.02 1.42 16 44 H 0.15 2.19 6.20 -2.91 -0.02 2.17 16 45 H 0.21 4.28 6.19 -2.91 -0.02 4.27 16 Total: -1.00 -70.43 388.35 5.59 -64.83 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 1.01 Total: 23.08 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 7.44 Total: 19.78 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -4.71 Total: -117.58 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.17 Total: -34.56 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.43 5.59 -64.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.883 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds