Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47422 * 2 1 4 4 C 1.34227 * 117.00215 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99760 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00283 * 180.02562 * 4 3 2 7 7 N 1.46498 * 109.47558 * 179.97438 * 6 4 3 8 8 C 1.46496 * 120.00004 * 269.99974 * 7 6 4 9 9 C 1.50699 * 109.47042 * 269.99617 * 8 7 6 10 10 H 1.07995 * 120.00309 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99635 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99609 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00201 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47193 * 89.99743 * 13 11 9 15 15 H 1.48492 * 109.47190 * 209.99761 * 13 11 9 16 16 H 1.48501 * 109.47127 * 330.00189 * 13 11 9 17 17 C 1.38846 * 119.99590 * 89.99873 * 7 6 4 18 18 C 1.39266 * 119.57646 * 5.02142 * 17 7 6 19 19 C 1.38025 * 119.22323 * 179.74554 * 18 17 7 20 20 C 1.40016 * 118.39999 * 0.47644 * 19 18 17 21 21 C 1.48292 * 120.45605 * 179.80330 * 20 19 18 22 22 C 1.39808 * 120.90518 * 179.71709 * 21 20 19 23 23 C 1.37946 * 119.01219 * 179.71688 * 22 21 20 24 24 N 1.31945 * 120.88865 * 0.26271 * 23 22 21 25 25 C 1.31940 * 122.00847 * 0.02562 * 24 23 22 26 26 C 1.37946 * 120.88826 * 359.97438 * 25 24 23 27 27 C 1.39207 * 119.08670 * 359.52505 * 20 19 18 28 28 N 1.31788 * 120.68451 * 0.22974 * 27 20 19 29 29 H 1.09007 * 109.46770 * 59.99784 * 1 2 3 30 30 H 1.08994 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47374 * 300.00165 * 1 2 3 32 32 H 1.09002 * 109.47374 * 239.99835 * 2 1 3 33 33 H 1.09004 * 109.46910 * 119.99725 * 2 1 3 34 34 H 1.09003 * 109.47128 * 59.99198 * 6 4 3 35 35 H 1.09001 * 109.47013 * 299.99926 * 6 4 3 36 36 H 1.08998 * 109.46925 * 30.00097 * 8 7 6 37 37 H 1.09005 * 109.46701 * 149.99497 * 8 7 6 38 38 H 0.97003 * 119.99849 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.38506 * 359.97438 * 18 17 7 40 40 H 1.08002 * 120.80122 * 180.27785 * 19 18 17 41 41 H 1.08002 * 120.49648 * 0.02562 * 22 21 20 42 42 H 1.08004 * 119.55681 * 180.27525 * 23 22 21 43 43 H 1.08002 * 119.55678 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.49227 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.65544 * 180.25510 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 7 5.3838 2.8606 0.0023 8 6 6.1143 2.8222 1.2715 9 6 6.4392 4.2278 1.7069 10 1 6.1319 5.0660 1.0992 11 6 7.1279 4.4438 2.8817 12 7 7.4110 5.6705 3.2619 13 14 7.6588 2.9940 3.9332 14 1 9.0111 2.5467 3.5132 15 1 7.6941 3.4040 5.3600 16 1 6.6933 1.8787 3.7623 17 6 6.0779 2.8244 -1.1997 18 6 5.3841 2.9671 -2.3987 19 6 6.0821 2.9353 -3.5891 20 6 7.4690 2.7494 -3.5430 21 6 8.2632 2.7035 -4.7945 22 6 9.6493 2.5241 -4.7592 23 6 10.3489 2.4815 -5.9473 24 7 9.7279 2.6125 -7.1041 25 6 8.4226 2.7891 -7.1811 26 6 7.6470 2.8438 -6.0416 27 6 8.0930 2.6140 -2.3060 28 7 7.3917 2.6550 -1.1910 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5845 3.4693 0.8911 35 1 3.5852 3.4697 -0.8888 36 1 5.4985 2.3398 2.0306 37 1 7.0386 2.2591 1.1418 38 1 7.8958 5.8225 4.0882 39 1 4.3129 3.1048 -2.3970 40 1 5.5703 3.0479 -4.5334 41 1 10.1641 2.4155 -3.8160 42 1 11.4193 2.3389 -5.9305 43 1 7.9550 2.8913 -8.1492 44 1 6.5790 2.9882 -6.1121 45 1 9.1629 2.4743 -2.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = 5.104586 kcal Electronic energy + Delta-G solvation = -28638.961922 eV Core-core repulsion = 24622.270929 eV Total energy + Delta-G solvation = -4016.690993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62921 -40.26143 -39.42086 -36.99696 -35.89826 -33.59467 -32.76262 -31.94224 -31.89323 -31.13631 -29.42239 -29.15273 -26.52293 -24.33787 -23.96645 -23.28696 -22.55347 -21.74762 -21.31421 -20.19769 -17.83132 -17.73195 -16.99676 -16.87093 -16.76692 -16.43327 -15.97920 -15.82963 -15.43696 -14.65846 -14.35430 -14.25551 -14.23175 -13.98810 -13.77977 -13.74086 -13.49717 -13.19645 -12.95972 -12.84408 -12.49456 -12.22751 -12.04711 -11.78884 -11.71415 -11.58490 -11.43314 -11.29248 -10.80367 -10.58520 -10.55843 -10.41173 -10.16174 -9.64230 -9.54833 -9.47131 -9.21088 -8.98648 -8.85501 -8.63962 -7.02020 -6.15424 -4.15024 0.74192 1.12319 1.60557 2.08232 2.32238 2.59748 3.25446 3.31224 3.35291 3.46268 3.82103 4.33376 4.34530 4.41083 4.54615 4.67292 4.73793 4.76934 4.83872 4.87817 4.93201 5.05299 5.07984 5.11627 5.15328 5.19966 5.34047 5.36564 5.52807 5.57807 5.59456 5.59998 5.71565 5.77659 5.87683 5.93254 6.01875 6.27023 6.41593 6.46161 6.59630 6.67168 6.74806 6.96778 7.38738 7.51177 7.79600 7.88884 7.95343 8.40097 8.58008 8.87393 9.44355 10.97417 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007514 B = 0.003675 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.306570 B = 7616.265023 C =10658.237359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.436 3.564 5 O -0.494 6.494 6 C 0.134 3.866 7 N -0.561 5.561 8 C 0.226 3.774 9 C -0.531 4.531 10 H 0.076 0.924 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.872 3.128 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.440 3.560 18 C -0.256 4.256 19 C -0.010 4.010 20 C -0.205 4.205 21 C 0.042 3.958 22 C -0.181 4.181 23 C 0.104 3.896 24 N -0.503 5.503 25 C 0.102 3.898 26 C -0.183 4.183 27 C 0.184 3.816 28 N -0.518 5.518 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.025 0.975 37 H 0.048 0.952 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.133 0.867 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.207 -8.153 -14.235 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.276 3.724 5 O -0.380 6.380 6 C 0.007 3.993 7 N -0.267 5.267 8 C 0.106 3.894 9 C -0.570 4.570 10 H 0.094 0.906 11 C -0.126 4.126 12 N -0.533 5.533 13 Si 0.699 3.301 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.204 3.796 18 C -0.281 4.281 19 C -0.036 4.036 20 C -0.211 4.211 21 C 0.033 3.967 22 C -0.200 4.200 23 C -0.052 4.052 24 N -0.212 5.212 25 C -0.054 4.054 26 C -0.203 4.203 27 C 0.022 3.978 28 N -0.232 5.232 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.133 0.867 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.150 0.850 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.139 -8.484 -13.792 17.696 hybrid contribution -0.585 -0.696 0.753 1.181 sum -7.725 -9.180 -13.039 17.719 Atomic orbital electron populations 1.21795 0.92728 1.02768 1.03526 1.22973 0.95200 0.80690 1.02468 1.86513 1.24844 1.32089 1.84407 1.25011 0.80452 0.94201 0.72743 1.90680 1.60319 1.42901 1.44055 1.20942 0.81421 0.89695 1.07230 1.46404 1.02400 1.72853 1.05012 1.19780 0.92560 0.98380 0.78721 1.21303 1.37125 0.91321 1.07202 0.90592 1.24791 0.95066 0.95535 0.97219 1.69887 1.40207 1.19669 1.23520 0.86909 0.80119 0.83195 0.79863 1.19729 1.21059 1.19121 1.18396 0.88474 0.87068 0.85647 1.21299 1.00861 1.13989 0.91998 1.21175 0.92685 0.92150 0.97557 1.19204 0.93838 1.15022 0.92997 1.19000 0.92820 0.92524 0.92344 1.22208 0.94089 1.03450 1.00301 1.22625 1.00226 0.94911 0.87444 1.67634 1.11046 1.13355 1.29214 1.22591 0.89518 0.95077 0.98241 1.22135 1.01419 1.04037 0.92681 1.22595 0.99334 0.89936 0.85944 1.67306 1.06208 1.19279 1.30446 0.91518 0.90466 0.91397 0.91487 0.91377 0.84980 0.86716 0.95661 0.93415 0.92481 0.85377 0.85247 0.84544 0.82887 0.83068 0.84964 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.79 10.22 -39.25 -0.40 -5.19 16 4 C 0.44 6.88 8.03 36.00 0.29 7.17 16 5 O -0.49 -9.50 16.18 -18.75 -0.30 -9.81 16 6 C 0.13 2.08 5.83 -5.20 -0.03 2.05 16 7 N -0.56 -11.24 2.06 -176.58 -0.36 -11.60 16 8 C 0.23 5.36 4.29 -5.20 -0.02 5.33 16 9 C -0.53 -14.45 9.94 -34.44 -0.34 -14.79 16 10 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 12 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 13 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 17 C 0.44 8.53 7.37 -155.07 -1.14 7.38 16 18 C -0.26 -3.97 9.25 -39.28 -0.36 -4.33 16 19 C -0.01 -0.14 9.55 -38.99 -0.37 -0.51 16 20 C -0.21 -2.98 5.89 -104.74 -0.62 -3.59 16 21 C 0.04 0.53 5.91 -104.59 -0.62 -0.08 16 22 C -0.18 -2.11 9.51 -39.10 -0.37 -2.48 16 23 C 0.10 1.17 11.17 -17.61 -0.20 0.97 16 24 N -0.50 -6.25 10.35 -13.35 -0.14 -6.39 16 25 C 0.10 1.11 11.17 -17.61 -0.20 0.91 16 26 C -0.18 -2.02 9.51 -39.10 -0.37 -2.39 16 27 C 0.18 3.05 10.61 -17.21 -0.18 2.87 16 28 N -0.52 -10.55 9.05 -12.17 -0.11 -10.66 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.13 1.95 8.07 -51.93 -0.42 1.53 16 35 H 0.12 1.40 5.96 -51.93 -0.31 1.09 16 36 H 0.03 0.60 7.13 -51.93 -0.37 0.23 16 37 H 0.05 1.21 6.72 -51.93 -0.35 0.86 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.13 1.64 6.00 -52.49 -0.32 1.32 16 40 H 0.13 1.33 6.41 -52.49 -0.34 0.99 16 41 H 0.14 1.37 6.36 -52.49 -0.33 1.04 16 42 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 1.17 6.40 -52.49 -0.34 0.83 16 45 H 0.15 2.11 6.30 -52.49 -0.33 1.78 16 LS Contribution 382.55 15.07 5.77 5.77 Total: -1.00 -34.89 382.55 -9.12 -44.01 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.65 Total: 2.59 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -4.03 Total: 0.69 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.16 Total: -54.53 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.70 Total: -15.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.89 -9.12 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.110 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds