Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47422 * 2 1 4 4 C 1.34227 * 117.00215 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99760 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00283 * 180.02562 * 4 3 2 7 7 N 1.46498 * 109.47558 * 179.97438 * 6 4 3 8 8 C 1.46496 * 120.00004 * 269.99974 * 7 6 4 9 9 C 1.50699 * 109.47042 * 269.99617 * 8 7 6 10 10 H 1.07995 * 120.00309 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99635 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99609 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00201 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47193 * 89.99743 * 13 11 9 15 15 H 1.48492 * 109.47190 * 209.99761 * 13 11 9 16 16 H 1.48501 * 109.47127 * 330.00189 * 13 11 9 17 17 C 1.38846 * 119.99590 * 89.99873 * 7 6 4 18 18 C 1.39266 * 119.57646 * 5.02142 * 17 7 6 19 19 C 1.38025 * 119.22323 * 179.74554 * 18 17 7 20 20 C 1.40016 * 118.39999 * 0.47644 * 19 18 17 21 21 C 1.48292 * 120.45605 * 179.80330 * 20 19 18 22 22 C 1.39808 * 120.90518 * 179.71709 * 21 20 19 23 23 C 1.37946 * 119.01219 * 179.71688 * 22 21 20 24 24 N 1.31945 * 120.88865 * 0.26271 * 23 22 21 25 25 C 1.31940 * 122.00847 * 0.02562 * 24 23 22 26 26 C 1.37946 * 120.88826 * 359.97438 * 25 24 23 27 27 C 1.39207 * 119.08670 * 359.52505 * 20 19 18 28 28 N 1.31788 * 120.68451 * 0.22974 * 27 20 19 29 29 H 1.09007 * 109.46770 * 59.99784 * 1 2 3 30 30 H 1.08994 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47374 * 300.00165 * 1 2 3 32 32 H 1.09002 * 109.47374 * 239.99835 * 2 1 3 33 33 H 1.09004 * 109.46910 * 119.99725 * 2 1 3 34 34 H 1.09003 * 109.47128 * 59.99198 * 6 4 3 35 35 H 1.09001 * 109.47013 * 299.99926 * 6 4 3 36 36 H 1.08998 * 109.46925 * 30.00097 * 8 7 6 37 37 H 1.09005 * 109.46701 * 149.99497 * 8 7 6 38 38 H 0.97003 * 119.99849 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.38506 * 359.97438 * 18 17 7 40 40 H 1.08002 * 120.80122 * 180.27785 * 19 18 17 41 41 H 1.08002 * 120.49648 * 0.02562 * 22 21 20 42 42 H 1.08004 * 119.55681 * 180.27525 * 23 22 21 43 43 H 1.08002 * 119.55678 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.49227 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.65544 * 180.25510 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 7 5.3838 2.8606 0.0023 8 6 6.1143 2.8222 1.2715 9 6 6.4392 4.2278 1.7069 10 1 6.1319 5.0660 1.0992 11 6 7.1279 4.4438 2.8817 12 7 7.4110 5.6705 3.2619 13 14 7.6588 2.9940 3.9332 14 1 9.0111 2.5467 3.5132 15 1 7.6941 3.4040 5.3600 16 1 6.6933 1.8787 3.7623 17 6 6.0779 2.8244 -1.1997 18 6 5.3841 2.9671 -2.3987 19 6 6.0821 2.9353 -3.5891 20 6 7.4690 2.7494 -3.5430 21 6 8.2632 2.7035 -4.7945 22 6 9.6493 2.5241 -4.7592 23 6 10.3489 2.4815 -5.9473 24 7 9.7279 2.6125 -7.1041 25 6 8.4226 2.7891 -7.1811 26 6 7.6470 2.8438 -6.0416 27 6 8.0930 2.6140 -2.3060 28 7 7.3917 2.6550 -1.1910 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5845 3.4693 0.8911 35 1 3.5852 3.4697 -0.8888 36 1 5.4985 2.3398 2.0306 37 1 7.0386 2.2591 1.1418 38 1 7.8958 5.8225 4.0882 39 1 4.3129 3.1048 -2.3970 40 1 5.5703 3.0479 -4.5334 41 1 10.1641 2.4155 -3.8160 42 1 11.4193 2.3389 -5.9305 43 1 7.9550 2.8913 -8.1492 44 1 6.5790 2.9882 -6.1121 45 1 9.1629 2.4743 -2.2596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = -15.003627 kcal Electronic energy + Delta-G solvation = -28639.833880 eV Core-core repulsion = 24622.270929 eV Total energy + Delta-G solvation = -4017.562951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82711 -41.33166 -40.49796 -38.21962 -37.21934 -34.92775 -34.55327 -33.15297 -32.73571 -32.04747 -30.85386 -30.52049 -27.95861 -25.49159 -25.16451 -24.34592 -23.64291 -22.97515 -22.50249 -21.49249 -19.25736 -18.93373 -18.69367 -18.04030 -17.97923 -17.55396 -17.16613 -16.77738 -16.59663 -16.15032 -15.68621 -15.58601 -15.21881 -15.17620 -14.92557 -14.73153 -14.64136 -14.42713 -14.29665 -13.94422 -13.64478 -13.52928 -13.40566 -13.09388 -12.94345 -12.70626 -12.52020 -12.50746 -12.37076 -12.31837 -11.85342 -11.65400 -11.61893 -11.54030 -10.82009 -10.72619 -10.46511 -10.23434 -10.13378 -10.04730 -8.37978 -8.31922 -6.35902 -0.31486 0.28123 0.41870 0.98266 1.10553 1.31134 1.34167 1.42081 1.47480 2.16164 2.30009 2.84084 3.01842 3.18420 3.43898 3.63250 3.64783 3.71271 3.83507 3.90466 3.95482 4.00401 4.08822 4.14213 4.20759 4.21970 4.30873 4.33647 4.46031 4.67726 4.73783 4.80555 4.82400 4.85772 4.93344 4.94246 5.00060 5.02193 5.13428 5.22493 5.41493 5.44510 5.51777 5.63220 5.81517 5.85274 6.22172 6.42613 6.65691 6.70574 7.09640 7.24507 7.31689 8.83466 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007514 B = 0.003675 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.306570 B = 7616.265023 C =10658.237359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.446 3.554 5 O -0.533 6.533 6 C 0.131 3.869 7 N -0.580 5.580 8 C 0.244 3.756 9 C -0.523 4.523 10 H 0.039 0.961 11 C 0.022 3.978 12 N -0.940 5.940 13 Si 0.935 3.065 14 H -0.272 1.272 15 H -0.276 1.276 16 H -0.255 1.255 17 C 0.405 3.595 18 C -0.251 4.251 19 C -0.008 4.008 20 C -0.189 4.189 21 C 0.018 3.982 22 C -0.186 4.186 23 C 0.097 3.903 24 N -0.521 5.521 25 C 0.097 3.903 26 C -0.176 4.176 27 C 0.159 3.841 28 N -0.566 5.566 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.025 0.975 37 H 0.028 0.972 38 H 0.268 0.732 39 H 0.156 0.844 40 H 0.173 0.827 41 H 0.144 0.856 42 H 0.176 0.824 43 H 0.182 0.818 44 H 0.159 0.841 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -9.229 -16.600 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.287 3.713 5 O -0.422 6.422 6 C 0.006 3.994 7 N -0.288 5.288 8 C 0.122 3.878 9 C -0.562 4.562 10 H 0.057 0.943 11 C -0.176 4.176 12 N -0.580 5.580 13 Si 0.760 3.240 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.179 1.179 17 C 0.171 3.829 18 C -0.275 4.275 19 C -0.033 4.033 20 C -0.195 4.195 21 C 0.010 3.990 22 C -0.206 4.206 23 C -0.059 4.059 24 N -0.231 5.231 25 C -0.059 4.059 26 C -0.196 4.196 27 C -0.001 4.001 28 N -0.282 5.282 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.174 0.826 40 H 0.190 0.810 41 H 0.162 0.838 42 H 0.193 0.807 43 H 0.199 0.801 44 H 0.177 0.823 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.676 -9.565 -16.210 20.725 hybrid contribution -0.094 -0.344 1.238 1.288 sum -8.770 -9.909 -14.973 19.982 Atomic orbital electron populations 1.21814 0.89868 1.04371 1.03962 1.23293 0.97372 0.79360 1.02176 1.86511 1.23244 1.33653 1.83686 1.24962 0.80949 0.93724 0.71625 1.90665 1.61369 1.44039 1.46124 1.21168 0.79256 0.89983 1.09021 1.46220 1.03858 1.74770 1.03953 1.19228 0.92326 0.95420 0.80857 1.21471 1.36176 0.92172 1.06396 0.94289 1.25603 0.95286 0.98039 0.98715 1.70019 1.41734 1.21850 1.24413 0.85899 0.79692 0.80141 0.78305 1.19738 1.20090 1.17899 1.18785 0.88671 0.88933 0.86541 1.21586 1.02204 1.12714 0.91040 1.21661 0.92343 0.90626 0.98656 1.19420 0.94611 1.12489 0.92939 1.19067 0.93234 0.94458 0.92273 1.22403 0.94111 1.03040 1.01026 1.22994 1.01378 0.94496 0.86993 1.67688 1.12084 1.13611 1.29714 1.23118 0.89093 0.94133 0.99570 1.22421 1.02789 1.02570 0.91789 1.22895 1.00053 0.90981 0.86199 1.67176 1.07534 1.20826 1.32697 0.90705 0.88267 0.91295 0.91404 0.92206 0.84748 0.83266 0.95734 0.95377 0.92313 0.82628 0.80986 0.83794 0.80731 0.80108 0.82348 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 10.29 71.98 0.74 -1.10 16 2 C 0.05 1.06 6.19 71.98 0.45 1.50 16 3 O -0.35 -8.92 10.22 -51.39 -0.53 -9.45 16 4 C 0.45 13.82 8.03 71.24 0.57 14.39 16 5 O -0.53 -20.63 16.18 21.98 0.36 -20.27 16 6 C 0.13 4.01 5.83 85.63 0.50 4.51 16 7 N -0.58 -23.69 2.06 -712.56 -1.46 -25.15 16 8 C 0.24 11.94 4.29 85.63 0.37 12.31 16 9 C -0.52 -29.63 9.94 25.60 0.25 -29.38 16 10 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 11 C 0.02 1.28 5.47 84.66 0.46 1.74 16 12 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 13 Si 0.94 44.67 27.47 68.60 1.88 46.55 16 14 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 17 C 0.40 15.87 7.37 133.13 0.98 16.85 16 18 C -0.25 -7.36 9.25 22.47 0.21 -7.16 16 19 C -0.01 -0.19 9.55 22.65 0.22 0.03 16 20 C -0.19 -5.24 5.89 -19.94 -0.12 -5.36 16 21 C 0.02 0.43 5.91 -19.84 -0.12 0.32 16 22 C -0.19 -4.10 9.51 22.58 0.21 -3.89 16 23 C 0.10 2.01 11.17 84.61 0.95 2.96 16 24 N -0.52 -11.73 10.35 -196.15 -2.03 -13.76 16 25 C 0.10 1.79 11.17 84.61 0.95 2.74 16 26 C -0.18 -3.30 9.51 22.58 0.21 -3.08 16 27 C 0.16 5.34 10.61 84.93 0.90 6.24 16 28 N -0.57 -23.86 9.05 -192.43 -1.74 -25.60 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 33 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 34 H 0.13 3.97 8.07 -2.39 -0.02 3.95 16 35 H 0.15 3.38 5.96 -2.39 -0.01 3.36 16 36 H 0.02 1.19 7.13 -2.39 -0.02 1.18 16 37 H 0.03 1.48 6.72 -2.38 -0.02 1.46 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.16 3.52 6.00 -2.91 -0.02 3.50 16 40 H 0.17 2.69 6.41 -2.91 -0.02 2.67 16 41 H 0.14 2.82 6.36 -2.91 -0.02 2.81 16 42 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 2.03 6.40 -2.91 -0.02 2.01 16 45 H 0.17 4.74 6.30 -2.91 -0.02 4.72 16 Total: -1.00 -79.43 382.55 5.48 -73.95 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.97 Total: 17.63 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 7.73 Total: 13.64 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -4.94 Total: -122.05 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.17 Total: -29.72 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -79.43 5.48 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.949 kcal (2) G-P(sol) polarization free energy of solvation -79.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds