Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47132 * 2 1 4 4 C 1.34763 * 116.99935 * 179.97438 * 3 2 1 5 5 O 1.21526 * 120.00403 * 0.02562 * 4 3 2 6 6 C 1.47315 * 120.00254 * 179.97438 * 4 3 2 7 7 C 1.39853 * 121.00109 * 5.14202 * 6 4 3 8 8 N 1.32174 * 118.99202 * 180.02562 * 7 6 4 9 9 C 1.32016 * 121.20789 * 0.02562 * 8 7 6 10 10 C 1.50705 * 118.86831 * 179.97438 * 9 8 7 11 11 N 1.31631 * 122.25473 * 359.70722 * 9 8 7 12 12 C 1.33028 * 120.84519 * 0.58541 * 11 9 8 13 13 N 1.37915 * 120.64588 * 179.71679 * 12 11 9 14 14 C 1.36906 * 119.99493 * 270.46008 * 13 12 11 15 15 H 1.07998 * 119.99728 * 185.41055 * 14 13 12 16 16 C 1.38907 * 120.00049 * 5.40986 * 14 13 12 17 17 N 1.31477 * 120.00156 * 352.13049 * 16 14 13 18 18 Si 1.86802 * 120.00004 * 172.40682 * 16 14 13 19 19 H 1.48500 * 109.47247 * 89.99973 * 18 16 14 20 20 H 1.48501 * 109.47188 * 210.00326 * 18 16 14 21 21 H 1.48502 * 109.47066 * 330.00088 * 18 16 14 22 22 C 1.46494 * 120.00285 * 90.45933 * 13 12 11 23 23 C 1.50701 * 109.47008 * 265.32293 * 22 13 12 24 24 C 1.38229 * 120.00571 * 274.43023 * 23 22 13 25 25 C 1.38232 * 120.00504 * 179.76577 * 24 23 22 26 26 C 1.38236 * 119.99563 * 0.50945 * 25 24 23 27 27 C 1.38229 * 120.00118 * 359.74076 * 26 25 24 28 28 C 1.38228 * 120.00149 * 0.02562 * 27 26 25 29 29 H 1.09006 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47379 * 300.00152 * 1 2 3 31 31 H 1.09010 * 109.47248 * 59.99800 * 1 2 3 32 32 H 1.09002 * 109.46809 * 239.99923 * 2 1 3 33 33 H 1.08996 * 109.46749 * 120.00355 * 2 1 3 34 34 H 1.08008 * 120.50671 * 0.03508 * 7 6 4 35 35 H 1.08995 * 109.47260 * 90.00046 * 10 9 8 36 36 H 1.09007 * 109.46677 * 209.99771 * 10 9 8 37 37 H 1.08995 * 109.47195 * 329.99184 * 10 9 8 38 38 H 0.97004 * 120.00308 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47046 * 25.32031 * 22 13 12 40 40 H 1.08996 * 109.47004 * 145.32534 * 22 13 12 41 41 H 1.08006 * 119.99505 * 359.97438 * 24 23 22 42 42 H 1.08002 * 120.00460 * 180.22455 * 25 24 23 43 43 H 1.08001 * 119.99329 * 179.72520 * 26 25 24 44 44 H 1.08003 * 119.99674 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00385 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9131 2.9068 0.0000 7 6 3.0852 4.0289 0.1064 8 7 3.6327 5.2318 0.1013 9 6 4.9395 5.3882 -0.0025 10 6 5.5075 6.7841 -0.0034 11 7 5.7637 4.3665 -0.1000 12 6 5.3043 3.1181 -0.1094 13 7 6.1711 2.0508 -0.2176 14 6 6.5147 1.5706 -1.4528 15 1 7.1227 0.6821 -1.5367 16 6 6.0813 2.2264 -2.5981 17 7 5.2173 3.2129 -2.5036 18 14 6.7199 1.7014 -4.2732 19 1 5.8303 0.6541 -4.8362 20 1 6.7425 2.8739 -5.1841 21 1 8.0949 1.1586 -4.1309 22 6 6.7241 1.4310 0.9891 23 6 8.0692 2.0383 1.2944 24 6 9.2069 1.5376 0.6897 25 6 10.4401 2.0978 0.9660 26 6 10.5367 3.1518 1.8552 27 6 9.3996 3.6491 2.4638 28 6 8.1659 3.0921 2.1838 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 2.0146 3.9142 0.1916 35 1 5.7298 7.0866 1.0199 36 1 6.4229 6.8034 -0.5950 37 1 4.7808 7.4717 -0.4359 38 1 4.9149 3.6711 -3.3034 39 1 6.0492 1.6027 1.8276 40 1 6.8377 0.3591 0.8275 41 1 9.1319 0.7109 -0.0013 42 1 11.3286 1.7090 0.4908 43 1 11.5008 3.5865 2.0744 44 1 9.4753 4.4724 3.1588 45 1 7.2775 3.4804 2.6597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166992282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 21.010339 kcal Electronic energy + Delta-G solvation = -30748.461796 eV Core-core repulsion = 26732.460528 eV Total energy + Delta-G solvation = -4016.001268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.18426 -39.04419 -38.64981 -36.36001 -35.41020 -32.58182 -32.23003 -31.75095 -31.24917 -30.34609 -29.79951 -28.08032 -25.77631 -24.61474 -23.47927 -22.54214 -22.01640 -21.61123 -20.63451 -20.05466 -17.84723 -17.28281 -16.43422 -16.27877 -15.92574 -15.71687 -15.43245 -14.79729 -14.56498 -14.45133 -14.09097 -13.57565 -13.46769 -13.32236 -13.11635 -12.88297 -12.86514 -12.58127 -12.35467 -12.06434 -11.82484 -11.80540 -11.48939 -11.44802 -11.32475 -11.12710 -11.00347 -10.80989 -10.56593 -10.44808 -10.41073 -10.08926 -10.01076 -9.52069 -9.34533 -9.02471 -8.35925 -8.33325 -8.23577 -8.09687 -7.31988 -6.04911 -3.46276 1.54636 1.91435 1.96907 2.39611 3.27759 3.29523 3.32912 3.34826 3.58329 4.15995 4.40982 4.69812 4.93612 4.97248 5.15447 5.20095 5.22324 5.36152 5.37768 5.42043 5.45890 5.55395 5.56800 5.69455 5.90342 5.91530 5.96490 5.97770 6.05610 6.06764 6.09381 6.12106 6.18170 6.27648 6.46450 6.49224 6.57227 6.60618 6.74773 6.98875 7.01309 7.10730 7.26242 7.34327 7.48510 7.57300 7.99130 8.17897 8.69245 8.95072 9.29914 9.49405 9.86043 11.00035 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.004968 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.722224 B = 5634.163706 C = 5951.447089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.369 6.369 4 C 0.520 3.480 5 O -0.481 6.481 6 C -0.241 4.241 7 C 0.195 3.805 8 N -0.564 5.564 9 C 0.341 3.659 10 C -0.078 4.078 11 N -0.520 5.520 12 C 0.593 3.407 13 N -0.530 5.530 14 C -0.219 4.219 15 H 0.091 0.909 16 C -0.010 4.010 17 N -0.903 5.903 18 Si 0.927 3.073 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.198 3.802 23 C -0.084 4.084 24 C -0.095 4.095 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.126 4.126 28 C -0.101 4.101 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.265 0.735 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -0.987 8.060 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 O -0.288 6.288 4 C 0.363 3.637 5 O -0.367 6.367 6 C -0.252 4.252 7 C 0.028 3.972 8 N -0.281 5.281 9 C 0.072 3.928 10 C -0.137 4.137 11 N -0.239 5.239 12 C 0.356 3.644 13 N -0.245 5.245 14 C -0.346 4.346 15 H 0.109 0.891 16 C -0.207 4.207 17 N -0.548 5.548 18 Si 0.757 3.243 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.202 1.202 22 C 0.072 3.928 23 C -0.087 4.087 24 C -0.114 4.114 25 C -0.145 4.145 26 C -0.152 4.152 27 C -0.144 4.144 28 C -0.120 4.120 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.978 -0.400 7.832 7.903 hybrid contribution -0.128 -1.038 -1.437 1.777 sum -1.105 -1.438 6.394 6.646 Atomic orbital electron populations 1.21777 0.93403 1.02308 1.03210 1.22794 0.94552 0.81353 1.02109 1.86534 1.25448 1.31128 1.85687 1.20699 0.79526 0.89999 0.73477 1.90813 1.59550 1.41881 1.44466 1.21009 0.96783 0.91236 1.16189 1.23002 0.99302 0.86835 0.88098 1.68030 1.14002 1.25622 1.20482 1.22785 0.85630 0.95326 0.89053 1.20436 1.01057 0.89762 1.02441 1.68390 1.40420 0.99414 1.15642 1.17319 0.84965 0.85918 0.76166 1.41053 1.49098 1.31004 1.03372 1.19391 1.26681 1.07997 0.80563 0.89087 1.24848 0.99167 0.97644 0.98996 1.69038 1.33156 1.24580 1.28024 0.85849 0.78610 0.77362 0.82485 1.21431 1.21454 1.20241 1.19832 0.88774 0.96603 0.87545 1.20862 0.96974 0.96228 0.94595 1.20977 0.91902 1.00062 0.98439 1.21033 0.97440 0.97289 0.98768 1.20936 0.97878 0.97805 0.98609 1.20959 0.92946 0.99865 1.00623 1.20881 0.96814 0.96034 0.98223 0.90833 0.91771 0.91683 0.91668 0.91879 0.82816 0.90825 0.90399 0.90713 0.92212 0.93168 0.90911 0.86410 0.86986 0.87158 0.87083 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 37.16 0.38 -1.26 16 2 C 0.07 0.99 6.20 37.16 0.23 1.22 16 3 O -0.37 -6.91 9.58 -40.66 -0.39 -7.30 16 4 C 0.52 11.48 7.89 34.42 0.27 11.75 16 5 O -0.48 -11.40 13.90 -19.29 -0.27 -11.66 16 6 C -0.24 -5.52 5.21 -104.50 -0.54 -6.06 16 7 C 0.19 4.05 10.89 -16.80 -0.18 3.86 16 8 N -0.56 -11.85 10.30 -10.43 -0.11 -11.96 16 9 C 0.34 7.31 7.64 -157.14 -1.20 6.11 16 10 C -0.08 -1.31 10.31 36.01 0.37 -0.94 16 11 N -0.52 -12.42 9.80 -9.70 -0.10 -12.51 16 12 C 0.59 14.40 3.58 -154.77 -0.55 13.85 16 13 N -0.53 -12.79 1.25 -115.85 -0.15 -12.93 16 14 C -0.22 -5.71 9.23 -15.04 -0.14 -5.85 16 15 H 0.09 2.30 7.84 -52.49 -0.41 1.88 16 16 C -0.01 -0.26 5.43 -17.46 -0.09 -0.36 16 17 N -0.90 -25.07 9.79 55.49 0.54 -24.53 16 18 Si 0.93 21.89 29.56 -169.99 -5.02 16.86 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.20 4.08 4.95 -5.20 -0.03 4.06 16 23 C -0.08 -1.60 5.43 -104.62 -0.57 -2.17 16 24 C -0.09 -1.72 9.72 -39.59 -0.38 -2.11 16 25 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 26 C -0.13 -2.04 10.05 -39.59 -0.40 -2.43 16 27 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 28 C -0.10 -1.80 9.68 -39.58 -0.38 -2.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.15 2.72 7.72 -52.48 -0.40 2.32 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 1.00 7.92 -51.93 -0.41 0.59 16 40 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 41 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -31.32 387.34 -9.94 -41.26 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.28 Total: 4.28 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -4.02 Total: 12.65 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.20 Total: -61.93 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.66 Total: -18.96 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.32 -9.94 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.270 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds