Wall clock time and date at job start Sat Apr 11 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47345 * 2 1 4 4 C 1.34233 * 117.00197 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00040 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.46823 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47434 * 55.00161 * 7 6 4 9 9 N 1.46496 * 109.47280 * 294.99721 * 7 6 4 10 10 C 1.32215 * 119.99892 * 126.72716 * 9 7 6 11 11 C 1.46915 * 120.82936 * 6.01090 * 10 9 7 12 12 C 1.34384 * 119.36458 * 179.74494 * 11 10 9 13 13 N 1.36418 * 121.22180 * 0.51144 * 12 11 10 14 14 H 0.97003 * 119.09239 * 179.71813 * 13 12 11 15 15 C 1.37772 * 121.82131 * 359.74295 * 13 12 11 16 16 C 1.40178 * 119.74364 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99610 * 204.10726 * 16 15 13 18 18 C 1.40356 * 120.00190 * 24.10863 * 16 15 13 19 19 N 1.30580 * 119.99791 * 16.37084 * 18 16 15 20 20 Si 1.86802 * 119.99990 * 196.37393 * 18 16 15 21 21 H 1.48502 * 109.47100 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46994 * 119.99979 * 20 18 16 23 23 H 1.48495 * 109.46884 * 239.99749 * 20 18 16 24 24 C 1.39068 * 120.51250 * 359.97438 * 15 13 12 25 25 C 1.50701 * 109.46638 * 175.00221 * 7 6 4 26 26 C 1.38677 * 120.41748 * 259.99719 * 25 7 6 27 27 C 1.38631 * 118.41824 * 180.02562 * 26 25 7 28 28 C 1.38222 * 119.16539 * 0.02562 * 27 26 25 29 29 N 1.31856 * 120.76319 * 0.02562 * 28 27 26 30 30 C 1.31897 * 121.72429 * 359.70611 * 29 28 27 31 31 H 1.09003 * 109.47029 * 300.00404 * 1 2 3 32 32 H 1.08997 * 109.47244 * 60.00040 * 1 2 3 33 33 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47029 * 239.99596 * 2 1 3 35 35 H 1.09006 * 109.46979 * 119.99870 * 2 1 3 36 36 H 1.09000 * 109.47005 * 300.00087 * 6 4 3 37 37 H 1.09005 * 109.46627 * 59.99932 * 6 4 3 38 38 H 1.08000 * 120.31875 * 359.97438 * 11 10 9 39 39 H 1.08005 * 119.38634 * 180.21203 * 12 11 10 40 40 H 0.97001 * 120.00287 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.62769 * 180.02562 * 24 15 13 42 42 H 1.07999 * 120.78580 * 359.97438 * 26 25 7 43 43 H 1.08003 * 120.41554 * 180.02562 * 27 26 25 44 44 H 1.07993 * 119.62005 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.61742 * 180.31133 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8572 -0.0010 8 1 5.7807 2.2492 -0.8425 9 7 5.9057 2.2494 1.2511 10 6 6.7182 1.2067 1.2218 11 6 7.2781 0.7239 -0.0478 12 6 8.1050 -0.3354 -0.0429 13 7 8.4257 -0.9767 1.1177 14 1 9.0225 -1.7408 1.0849 15 6 7.9250 -0.5696 2.3349 16 6 8.2831 -1.2610 3.5006 17 1 7.6391 -1.2283 4.3670 18 6 9.4783 -1.9956 3.5417 19 7 10.4026 -1.7894 2.6427 20 14 9.7466 -3.2684 4.8824 21 1 8.5574 -3.3098 5.7708 22 1 9.9500 -4.6032 4.2641 23 1 10.9460 -2.9036 5.6782 24 6 7.0672 0.5220 2.4161 25 6 6.0244 4.2444 -0.1254 26 6 6.4793 4.7085 -1.3505 27 6 7.0015 5.9909 -1.4176 28 6 7.0516 6.7587 -0.2693 29 7 6.6107 6.2841 0.8792 30 6 6.1028 5.0709 0.9791 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5845 3.4693 -0.8912 37 1 3.5851 3.4697 0.8889 38 1 7.0305 1.2179 -0.9758 39 1 8.5196 -0.6884 -0.9756 40 1 11.2289 -2.2968 2.6713 41 1 6.6740 0.8430 3.3694 42 1 6.4286 4.0854 -2.2311 43 1 7.3646 6.3851 -2.3552 44 1 7.4573 7.7586 -0.3131 45 1 5.7471 4.7184 1.9359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169679666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:03 Heat of formation + Delta-G solvation = -15.146365 kcal Electronic energy + Delta-G solvation = -29052.656482 eV Core-core repulsion = 25035.087341 eV Total energy + Delta-G solvation = -4017.569140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.17097 -39.66378 -38.51466 -36.55129 -35.24531 -33.92792 -32.36342 -31.83010 -31.47568 -30.56149 -29.72157 -27.90002 -26.20063 -24.52981 -23.21556 -22.98730 -21.77884 -21.33144 -20.72304 -19.37033 -18.04328 -17.35597 -16.69278 -16.61432 -16.44303 -16.04526 -15.91161 -15.32424 -14.89865 -14.50057 -14.38640 -13.93781 -13.59829 -13.56562 -13.26221 -13.04133 -12.89988 -12.75578 -12.71734 -12.56099 -12.22954 -11.93580 -11.65605 -11.55656 -11.48872 -11.45170 -11.15669 -11.02453 -10.82684 -10.59368 -10.30040 -10.20855 -9.95254 -9.70574 -9.49503 -9.44691 -9.04408 -8.58059 -8.18435 -7.54360 -7.27173 -5.95932 -4.78043 1.47640 1.59689 2.59268 2.74064 2.80704 2.88855 2.95818 3.01871 3.16544 3.65841 4.17158 4.29218 4.64141 4.79478 4.96333 4.97326 5.03916 5.11083 5.22342 5.29572 5.32670 5.34756 5.41244 5.52962 5.64048 5.67319 5.72355 5.78255 5.88498 5.92542 6.08537 6.17314 6.23719 6.35844 6.41049 6.62274 6.72077 6.74878 6.82626 6.85544 6.90976 7.10183 7.42675 7.67345 7.78643 7.99060 8.26735 8.28971 8.31133 8.34517 8.82068 8.94037 9.70675 9.73034 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007931 B = 0.003730 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.815907 B = 7505.854913 C =10094.542339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.459 3.541 5 O -0.479 6.479 6 C -0.091 4.091 7 C 0.139 3.861 8 H 0.053 0.947 9 N -0.668 5.668 10 C 0.313 3.687 11 C -0.283 4.283 12 C 0.120 3.880 13 N -0.600 5.600 14 H 0.412 0.588 15 C 0.334 3.666 16 C -0.467 4.467 17 H 0.103 0.897 18 C 0.077 3.923 19 N -0.814 5.814 20 Si 0.922 3.078 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.354 4.354 25 C -0.110 4.110 26 C -0.083 4.083 27 C -0.180 4.180 28 C 0.080 3.920 29 N -0.492 5.492 30 C 0.129 3.871 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.291 0.709 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 3.005 -8.354 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.300 3.700 5 O -0.363 6.363 6 C -0.130 4.130 7 C 0.026 3.974 8 H 0.071 0.929 9 N -0.396 5.396 10 C 0.153 3.847 11 C -0.313 4.313 12 C -0.010 4.010 13 N -0.210 5.210 14 H 0.252 0.748 15 C 0.225 3.775 16 C -0.500 4.500 17 H 0.121 0.879 18 C -0.141 4.141 19 N -0.442 5.442 20 Si 0.746 3.254 21 H -0.178 1.178 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.383 4.383 25 C -0.113 4.113 26 C -0.109 4.109 27 C -0.200 4.200 28 C -0.077 4.077 29 N -0.200 5.200 30 C -0.028 4.028 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.164 0.836 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.996 3.775 -7.153 11.373 hybrid contribution 0.930 -1.834 -1.310 2.438 sum -7.066 1.942 -8.462 11.195 Atomic orbital electron populations 1.21783 0.93162 1.02578 1.03192 1.22889 0.94803 0.81025 1.02464 1.86485 1.25673 1.31714 1.85023 1.23743 0.79934 0.93258 0.73016 1.90742 1.59775 1.42742 1.43077 1.21449 0.96834 0.90464 1.04225 1.19837 0.90217 0.90188 0.97159 0.92925 1.73433 1.28400 1.18243 1.19562 1.20014 0.86514 0.87949 0.90239 1.22154 1.07213 1.02613 0.99301 1.21198 0.96284 0.94146 0.89349 1.42020 1.44824 1.30044 1.04113 0.74814 1.17630 0.86901 0.89462 0.83515 1.19541 1.05080 1.26165 0.99246 0.87925 1.26182 0.94466 0.96109 0.97373 1.69366 1.05962 1.34872 1.33969 0.85998 0.79707 0.79317 0.80396 1.17849 1.19470 1.19541 1.20199 1.18357 1.03320 0.96404 1.21259 0.98809 0.97619 0.93620 1.21502 0.96424 0.95424 0.97598 1.21995 1.02501 0.95562 0.99962 1.22637 0.97025 0.99628 0.88375 1.67749 1.09944 1.15171 1.27170 1.22778 0.93179 0.87742 0.99124 0.91592 0.91815 0.90599 0.91745 0.91294 0.89329 0.87811 0.87048 0.85439 0.89771 0.86974 0.85605 0.85538 0.83584 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.79 10.22 -39.26 -0.40 -6.20 16 4 C 0.46 8.20 7.82 36.01 0.28 8.48 16 5 O -0.48 -10.19 14.28 -18.75 -0.27 -10.46 16 6 C -0.09 -1.47 5.47 -27.88 -0.15 -1.63 16 7 C 0.14 2.59 1.98 -69.08 -0.14 2.45 16 8 H 0.05 1.02 5.04 -51.93 -0.26 0.76 16 9 N -0.67 -15.07 8.86 -51.91 -0.46 -15.53 16 10 C 0.31 7.57 5.89 -82.74 -0.49 7.08 16 11 C -0.28 -6.17 9.26 -37.43 -0.35 -6.52 16 12 C 0.12 2.43 11.15 -16.87 -0.19 2.25 16 13 N -0.60 -13.38 4.87 -10.83 -0.05 -13.43 16 14 H 0.41 8.79 6.42 -40.82 -0.26 8.53 16 15 C 0.33 8.27 6.35 -84.16 -0.53 7.73 16 16 C -0.47 -11.22 9.03 -38.06 -0.34 -11.56 16 17 H 0.10 2.42 7.90 -52.49 -0.41 2.00 16 18 C 0.08 1.69 5.18 -17.29 -0.09 1.60 16 19 N -0.81 -18.01 11.17 55.57 0.62 -17.39 16 20 Si 0.92 16.61 29.59 -169.99 -5.03 11.58 16 21 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 22 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 24 C -0.35 -9.08 9.83 -37.82 -0.37 -9.45 16 25 C -0.11 -1.90 4.96 -104.48 -0.52 -2.41 16 26 C -0.08 -1.21 9.82 -39.27 -0.39 -1.60 16 27 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 16 28 C 0.08 1.14 11.18 -17.55 -0.20 0.95 16 29 N -0.49 -8.49 10.36 -13.25 -0.14 -8.62 16 30 C 0.13 2.32 10.49 -17.54 -0.18 2.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 35 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.11 2.25 6.00 -52.49 -0.31 1.93 16 39 H 0.13 2.06 8.06 -52.48 -0.42 1.63 16 40 H 0.29 5.79 8.29 -40.82 -0.34 5.45 16 41 H 0.11 2.94 8.06 -52.49 -0.42 2.51 16 42 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.16 3.06 7.73 -52.49 -0.41 2.65 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -29.24 384.34 -9.24 -38.48 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -5.87 Total: 19.02 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.44 Total: -3.25 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.03 Total: -54.98 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.67 Total: -16.65 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.24 -9.24 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169679666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.338 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds