Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.47345 * 2 1 4 4 C 1.34233 * 117.00197 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00040 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.46823 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47434 * 55.00161 * 7 6 4 9 9 N 1.46496 * 109.47280 * 294.99721 * 7 6 4 10 10 C 1.32215 * 119.99892 * 126.72716 * 9 7 6 11 11 C 1.46915 * 120.82936 * 6.01090 * 10 9 7 12 12 C 1.34384 * 119.36458 * 179.74494 * 11 10 9 13 13 N 1.36418 * 121.22180 * 0.51144 * 12 11 10 14 14 H 0.97003 * 119.09239 * 179.71813 * 13 12 11 15 15 C 1.37772 * 121.82131 * 359.74295 * 13 12 11 16 16 C 1.40178 * 119.74364 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99610 * 204.10726 * 16 15 13 18 18 C 1.40356 * 120.00190 * 24.10863 * 16 15 13 19 19 N 1.30580 * 119.99791 * 16.37084 * 18 16 15 20 20 Si 1.86802 * 119.99990 * 196.37393 * 18 16 15 21 21 H 1.48502 * 109.47100 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46994 * 119.99979 * 20 18 16 23 23 H 1.48495 * 109.46884 * 239.99749 * 20 18 16 24 24 C 1.39068 * 120.51250 * 359.97438 * 15 13 12 25 25 C 1.50701 * 109.46638 * 175.00221 * 7 6 4 26 26 C 1.38677 * 120.41748 * 259.99719 * 25 7 6 27 27 C 1.38631 * 118.41824 * 180.02562 * 26 25 7 28 28 C 1.38222 * 119.16539 * 0.02562 * 27 26 25 29 29 N 1.31856 * 120.76319 * 0.02562 * 28 27 26 30 30 C 1.31897 * 121.72429 * 359.70611 * 29 28 27 31 31 H 1.09003 * 109.47029 * 300.00404 * 1 2 3 32 32 H 1.08997 * 109.47244 * 60.00040 * 1 2 3 33 33 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47029 * 239.99596 * 2 1 3 35 35 H 1.09006 * 109.46979 * 119.99870 * 2 1 3 36 36 H 1.09000 * 109.47005 * 300.00087 * 6 4 3 37 37 H 1.09005 * 109.46627 * 59.99932 * 6 4 3 38 38 H 1.08000 * 120.31875 * 359.97438 * 11 10 9 39 39 H 1.08005 * 119.38634 * 180.21203 * 12 11 10 40 40 H 0.97001 * 120.00287 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.62769 * 180.02562 * 24 15 13 42 42 H 1.07999 * 120.78580 * 359.97438 * 26 25 7 43 43 H 1.08003 * 120.41554 * 180.02562 * 27 26 25 44 44 H 1.07993 * 119.62005 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.61742 * 180.31133 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8572 -0.0010 8 1 5.7807 2.2492 -0.8425 9 7 5.9057 2.2494 1.2511 10 6 6.7182 1.2067 1.2218 11 6 7.2781 0.7239 -0.0478 12 6 8.1050 -0.3354 -0.0429 13 7 8.4257 -0.9767 1.1177 14 1 9.0225 -1.7408 1.0849 15 6 7.9250 -0.5696 2.3349 16 6 8.2831 -1.2610 3.5006 17 1 7.6391 -1.2283 4.3670 18 6 9.4783 -1.9956 3.5417 19 7 10.4026 -1.7894 2.6427 20 14 9.7466 -3.2684 4.8824 21 1 8.5574 -3.3098 5.7708 22 1 9.9500 -4.6032 4.2641 23 1 10.9460 -2.9036 5.6782 24 6 7.0672 0.5220 2.4161 25 6 6.0244 4.2444 -0.1254 26 6 6.4793 4.7085 -1.3505 27 6 7.0015 5.9909 -1.4176 28 6 7.0516 6.7587 -0.2693 29 7 6.6107 6.2841 0.8792 30 6 6.1028 5.0709 0.9791 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.5845 3.4693 -0.8912 37 1 3.5851 3.4697 0.8889 38 1 7.0305 1.2179 -0.9758 39 1 8.5196 -0.6884 -0.9756 40 1 11.2289 -2.2968 2.6713 41 1 6.6740 0.8430 3.3694 42 1 6.4286 4.0854 -2.2311 43 1 7.3646 6.3851 -2.3552 44 1 7.4573 7.7586 -0.3131 45 1 5.7471 4.7184 1.9359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169679666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = -31.921487 kcal Electronic energy + Delta-G solvation = -29053.383905 eV Core-core repulsion = 25035.087341 eV Total energy + Delta-G solvation = -4018.296564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53200 -40.92170 -40.22592 -37.92929 -36.78782 -35.59737 -33.88741 -32.98456 -32.60181 -32.30291 -30.97795 -29.55133 -27.92633 -25.92029 -24.43720 -24.03560 -23.37489 -22.85138 -22.18868 -20.85395 -19.76688 -18.71792 -18.37529 -17.87729 -17.79047 -17.38642 -17.28887 -16.85792 -16.36024 -15.97072 -15.64391 -15.42107 -14.99890 -14.87670 -14.63575 -14.46297 -14.35838 -14.11772 -13.89528 -13.61432 -13.57215 -13.36077 -13.19981 -12.90631 -12.80556 -12.78015 -12.55871 -12.43964 -12.34726 -12.27612 -11.83332 -11.50658 -11.45273 -11.33989 -11.08134 -10.65978 -10.31846 -9.94944 -9.81832 -9.22194 -8.96689 -7.69955 -6.63226 0.27682 0.41515 0.96838 1.12318 1.34299 1.39853 1.54412 1.60154 1.78330 2.15233 2.56864 2.92902 2.96937 3.49637 3.65202 3.78843 3.85505 3.98097 4.03522 4.09944 4.10829 4.16440 4.19531 4.33322 4.33928 4.40013 4.55173 4.67983 4.75650 4.84459 4.90696 4.92486 4.97836 4.99745 5.04863 5.09115 5.14175 5.22548 5.27288 5.47956 5.54952 5.67745 5.83815 5.91106 6.00585 6.11819 6.51883 6.52323 6.89422 7.02731 7.12738 7.20613 8.00022 8.05213 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007931 B = 0.003730 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.815907 B = 7505.854913 C =10094.542339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 O -0.367 6.367 4 C 0.459 3.541 5 O -0.519 6.519 6 C -0.087 4.087 7 C 0.142 3.858 8 H 0.047 0.953 9 N -0.683 5.683 10 C 0.294 3.706 11 C -0.298 4.298 12 C 0.124 3.876 13 N -0.602 5.602 14 H 0.416 0.584 15 C 0.322 3.678 16 C -0.499 4.499 17 H 0.092 0.908 18 C 0.050 3.950 19 N -0.825 5.825 20 Si 0.994 3.006 21 H -0.263 1.263 22 H -0.253 1.253 23 H -0.265 1.265 24 C -0.401 4.401 25 C -0.126 4.126 26 C -0.083 4.083 27 C -0.164 4.164 28 C 0.076 3.924 29 N -0.517 5.517 30 C 0.106 3.894 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.177 0.823 40 H 0.305 0.695 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.171 0.829 44 H 0.181 0.819 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 3.093 -10.879 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.302 3.698 5 O -0.406 6.406 6 C -0.125 4.125 7 C 0.029 3.971 8 H 0.065 0.935 9 N -0.410 5.410 10 C 0.132 3.868 11 C -0.327 4.327 12 C -0.005 4.005 13 N -0.213 5.213 14 H 0.256 0.744 15 C 0.213 3.787 16 C -0.531 4.531 17 H 0.110 0.890 18 C -0.168 4.168 19 N -0.452 5.452 20 Si 0.814 3.186 21 H -0.187 1.187 22 H -0.177 1.177 23 H -0.189 1.189 24 C -0.430 4.430 25 C -0.128 4.128 26 C -0.109 4.109 27 C -0.184 4.184 28 C -0.081 4.081 29 N -0.226 5.226 30 C -0.050 4.050 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.194 0.806 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.169 0.831 43 H 0.188 0.812 44 H 0.198 0.802 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.450 3.897 -9.700 12.837 hybrid contribution 0.737 -1.733 -0.580 1.971 sum -6.713 2.164 -10.281 12.468 Atomic orbital electron populations 1.21794 0.89841 1.04327 1.03798 1.23183 0.97361 0.79714 1.01722 1.86486 1.24385 1.33243 1.84395 1.24083 0.80408 0.93415 0.71891 1.90730 1.60762 1.44025 1.45084 1.21461 0.95284 0.89919 1.05873 1.19858 0.91572 0.90705 0.94961 0.93493 1.73292 1.27240 1.17531 1.22897 1.20097 0.87396 0.88539 0.90789 1.22255 1.07993 1.03666 0.98802 1.21848 0.95196 0.93153 0.90260 1.41989 1.44987 1.30373 1.03921 0.74372 1.17729 0.86886 0.89213 0.84916 1.19706 1.06409 1.27871 0.99137 0.89028 1.26898 0.93264 0.96987 0.99607 1.69348 1.06346 1.34911 1.34619 0.84956 0.79174 0.77110 0.77402 1.18660 1.17732 1.18933 1.20149 1.21098 1.05541 0.96167 1.21094 1.00320 0.96648 0.94776 1.21825 0.95427 0.96518 0.97153 1.22436 1.00327 0.94370 1.01225 1.23309 0.95874 1.01133 0.87824 1.67705 1.10834 1.14856 1.29216 1.22461 0.95050 0.88833 0.98660 0.91488 0.90644 0.88266 0.91577 0.93083 0.85663 0.87910 0.85417 0.80568 0.88331 0.89934 0.83146 0.81182 0.80191 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.73 16 2 C 0.05 1.43 6.19 71.98 0.45 1.88 16 3 O -0.37 -11.54 10.22 -51.44 -0.53 -12.07 16 4 C 0.46 16.77 7.82 71.24 0.56 17.33 16 5 O -0.52 -22.93 14.28 21.95 0.31 -22.61 16 6 C -0.09 -2.84 5.47 29.85 0.16 -2.68 16 7 C 0.14 5.37 1.98 44.25 0.09 5.46 16 8 H 0.05 1.83 5.04 -2.39 -0.01 1.82 16 9 N -0.68 -32.66 8.86 -318.15 -2.82 -35.48 16 10 C 0.29 15.04 5.89 42.30 0.25 15.29 16 11 C -0.30 -13.19 9.26 23.66 0.22 -12.97 16 12 C 0.12 5.00 11.15 83.10 0.93 5.93 16 13 N -0.60 -27.29 4.87 -188.18 -0.92 -28.21 16 14 H 0.42 17.73 6.42 -92.71 -0.60 17.13 16 15 C 0.32 16.82 6.35 38.88 0.25 17.07 16 16 C -0.50 -25.13 9.03 23.26 0.21 -24.92 16 17 H 0.09 4.64 7.90 -2.91 -0.02 4.62 16 18 C 0.05 2.20 5.18 85.39 0.44 2.64 16 19 N -0.83 -36.07 11.17 21.89 0.24 -35.82 16 20 Si 0.99 33.65 29.59 68.60 2.03 35.68 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 23 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 24 C -0.40 -22.26 9.83 23.41 0.23 -22.03 16 25 C -0.13 -4.30 4.96 -19.77 -0.10 -4.40 16 26 C -0.08 -2.21 9.82 22.47 0.22 -1.99 16 27 C -0.16 -3.68 10.11 22.36 0.23 -3.45 16 28 C 0.08 1.96 11.18 84.69 0.95 2.91 16 29 N -0.52 -17.75 10.36 -195.84 -2.03 -19.78 16 30 C 0.11 3.95 10.49 84.67 0.89 4.84 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 35 H 0.05 1.53 8.13 -2.38 -0.02 1.51 16 36 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 38 H 0.13 5.10 6.00 -2.91 -0.02 5.09 16 39 H 0.18 5.22 8.06 -2.91 -0.02 5.20 16 40 H 0.30 11.68 8.29 -92.71 -0.77 10.91 16 41 H 0.08 4.85 8.06 -2.91 -0.02 4.82 16 42 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 45 H 0.14 5.61 7.73 -2.91 -0.02 5.59 16 Total: -1.00 -68.99 384.34 3.43 -65.57 By element: Atomic # 1 Polarization: 53.14 SS G_CDS: 0.43 Total: 53.57 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.70 Total: -0.84 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -5.52 Total: -119.30 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.21 Total: -34.68 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Total: -68.99 3.43 -65.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169679666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.646 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds