Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45196 * 109.46840 * 2 1 4 4 C 1.34226 * 116.99727 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00472 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99952 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47196 * 60.00513 * 6 4 3 8 8 C 1.53004 * 109.47236 * 300.00211 * 6 4 3 9 9 C 1.50701 * 109.47045 * 175.00138 * 8 6 4 10 10 C 1.38223 * 119.61713 * 125.00286 * 9 8 6 11 11 C 1.38632 * 119.16191 * 179.97438 * 10 9 8 12 12 C 1.38665 * 118.41872 * 359.97438 * 11 10 9 13 13 C 1.38183 * 119.16239 * 0.27722 * 12 11 10 14 14 N 1.31846 * 119.61732 * 304.97898 * 9 8 6 15 15 N 1.46509 * 109.47091 * 180.02562 * 6 4 3 16 16 C 1.38361 * 120.00225 * 274.99841 * 15 6 4 17 17 C 1.39711 * 119.42857 * 359.72775 * 16 15 6 18 18 C 1.36562 * 119.49200 * 179.75991 * 17 16 15 19 19 C 1.41331 * 118.40888 * 0.50518 * 18 17 16 20 20 C 1.41197 * 120.56958 * 179.76301 * 19 18 17 21 21 H 1.08003 * 120.00257 * 330.33527 * 20 19 18 22 22 C 1.39872 * 119.99511 * 150.33260 * 20 19 18 23 23 N 1.30907 * 119.99650 * 161.77788 * 22 20 19 24 24 Si 1.86799 * 120.00262 * 341.77404 * 22 20 19 25 25 H 1.48494 * 109.46855 * 95.41097 * 24 22 20 26 26 H 1.48499 * 109.47125 * 215.40836 * 24 22 20 27 27 H 1.48491 * 109.47148 * 335.40868 * 24 22 20 28 28 C 1.40757 * 118.85670 * 359.74058 * 19 18 17 29 29 N 1.31488 * 120.36737 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47173 * 59.99762 * 1 2 3 31 31 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47079 * 299.99627 * 1 2 3 33 33 H 1.09004 * 109.46935 * 239.99846 * 2 1 3 34 34 H 1.09000 * 109.47173 * 120.00238 * 2 1 3 35 35 H 1.08998 * 109.46932 * 55.00185 * 8 6 4 36 36 H 1.09006 * 109.47082 * 294.99971 * 8 6 4 37 37 H 1.08001 * 120.42038 * 359.95106 * 10 9 8 38 38 H 1.08004 * 120.78955 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.42158 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.61531 * 179.70233 * 13 12 11 41 41 H 0.97001 * 119.99567 * 95.00005 * 15 6 4 42 42 H 1.07997 * 120.25367 * 0.02562 * 17 16 15 43 43 H 1.08002 * 120.79810 * 180.22349 * 18 17 16 44 44 H 0.96994 * 119.99871 * 180.02562 * 23 22 20 45 45 H 1.07997 * 119.81408 * 179.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4495 3.6848 -1.2480 9 6 3.9237 5.1139 -1.1871 10 6 4.6658 5.6326 -2.2315 11 6 5.0966 6.9486 -2.1658 12 6 4.7630 7.6972 -1.0473 13 6 4.0224 7.1091 -0.0398 14 7 3.6254 5.8552 -0.1383 15 7 5.3838 2.8607 0.0010 16 6 6.0693 2.7197 1.1946 17 6 5.3546 2.6574 2.3935 18 6 6.0296 2.5133 3.5718 19 6 7.4406 2.4427 3.5342 20 6 8.1845 2.2988 4.7257 21 1 7.8036 2.7025 5.6522 22 6 9.4146 1.6334 4.7060 23 7 10.2635 1.7978 5.6888 24 14 9.8461 0.5099 3.2773 25 1 10.6489 1.2630 2.2805 26 1 10.6342 -0.6454 3.7766 27 1 8.5984 0.0192 2.6391 28 6 8.0915 2.5178 2.2884 29 7 7.3948 2.6519 1.1814 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3607 3.6648 -1.2943 36 1 3.8598 3.2034 -2.1358 37 1 4.9072 5.0203 -3.0877 38 1 5.6776 7.3808 -2.9672 39 1 5.0814 8.7257 -0.9627 40 1 3.7625 7.6839 0.8368 41 1 5.8718 2.9088 -0.8358 42 1 4.2764 2.7184 2.3880 43 1 5.4981 2.4592 4.5105 44 1 11.1167 1.3367 5.6750 45 1 9.1693 2.4659 2.2417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170829251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = -12.801671 kcal Electronic energy + Delta-G solvation = -29241.602987 eV Core-core repulsion = 25224.135521 eV Total energy + Delta-G solvation = -4017.467467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69659 -40.07823 -38.77608 -36.80939 -35.71604 -33.83766 -32.68373 -32.33235 -31.82003 -31.28388 -30.02146 -28.63405 -25.68953 -24.50935 -23.65159 -23.13913 -22.52760 -21.78818 -20.98402 -20.29139 -17.79993 -17.48458 -17.13952 -16.93047 -16.49270 -16.30714 -16.21244 -15.69597 -15.45801 -14.87964 -14.44351 -14.05508 -13.85915 -13.71046 -13.59298 -13.35827 -13.16149 -12.97253 -12.89740 -12.65299 -12.64157 -12.25810 -12.02600 -11.83126 -11.79041 -11.64419 -11.53593 -11.07234 -10.81927 -10.52413 -10.42405 -10.39034 -9.99251 -9.95103 -9.51680 -9.46522 -9.07061 -8.91354 -8.53015 -8.15881 -6.94470 -6.87307 -4.30042 1.00265 1.19991 2.36233 2.48300 2.60987 2.81547 3.19161 3.26995 3.40318 3.68205 3.80422 4.03949 4.15593 4.41547 4.62378 4.74112 4.76874 4.81389 4.84539 4.94934 4.97766 5.02999 5.10410 5.16426 5.38380 5.46954 5.51882 5.57650 5.63315 5.65031 5.68102 5.80847 5.86058 6.00857 6.06839 6.13180 6.27956 6.50410 6.51474 6.59811 6.91490 7.04420 7.25404 7.33241 7.75924 7.90026 7.91693 8.01506 8.29970 8.36588 8.62957 8.80884 9.47955 10.15607 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008582 B = 0.003942 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.922027 B = 7101.059198 C = 9350.848705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.432 3.568 5 O -0.484 6.484 6 C 0.190 3.810 7 H 0.126 0.874 8 C -0.070 4.070 9 C 0.141 3.859 10 C -0.167 4.167 11 C -0.072 4.072 12 C -0.179 4.179 13 C 0.108 3.892 14 N -0.474 5.474 15 N -0.712 5.712 16 C 0.283 3.717 17 C -0.179 4.179 18 C -0.136 4.136 19 C 0.015 3.985 20 C -0.443 4.443 21 H 0.090 0.910 22 C 0.085 3.915 23 N -0.814 5.814 24 Si 0.902 3.098 25 H -0.267 1.267 26 H -0.289 1.289 27 H -0.248 1.248 28 C 0.005 3.995 29 N -0.503 5.503 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.156 0.844 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.284 0.716 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.249 5.769 -15.408 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.271 3.729 5 O -0.369 6.369 6 C 0.079 3.921 7 H 0.143 0.857 8 C -0.108 4.108 9 C 0.003 3.997 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.198 4.198 13 C -0.049 4.049 14 N -0.183 5.183 15 N -0.349 5.349 16 C 0.051 3.949 17 C -0.203 4.203 18 C -0.162 4.162 19 C 0.009 3.991 20 C -0.473 4.473 21 H 0.108 0.892 22 C -0.133 4.133 23 N -0.439 5.439 24 Si 0.729 3.271 25 H -0.193 1.193 26 H -0.216 1.216 27 H -0.172 1.172 28 C -0.154 4.154 29 N -0.217 5.217 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.231 0.769 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.094 0.906 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.990 5.083 -15.229 22.659 hybrid contribution 0.753 -0.448 -0.606 1.066 sum -15.236 4.635 -15.835 22.458 Atomic orbital electron populations 1.21792 0.92815 1.02734 1.03426 1.22972 0.95137 0.80886 1.02499 1.86527 1.25085 1.31922 1.84418 1.25244 0.80371 0.94282 0.73033 1.90699 1.60259 1.42668 1.43252 1.20141 0.82558 0.87971 1.01460 0.85666 1.20738 1.02989 0.89801 0.97306 1.20842 0.93902 0.95151 0.89809 1.21926 0.99949 0.96517 1.00305 1.21543 0.96715 0.93868 0.97706 1.22129 1.00721 1.01537 0.95452 1.22729 0.93546 0.90813 0.97842 1.67388 1.20887 1.06336 1.23711 1.43282 1.01346 1.83712 1.06610 1.17537 0.88188 1.04227 0.84903 1.20709 0.98259 1.08441 0.92872 1.20982 0.93902 1.04983 0.96368 1.18495 0.92311 0.94125 0.94137 1.19211 1.01110 1.31576 0.95417 0.89199 1.26047 0.94582 0.95963 0.96719 1.69718 1.06985 1.35265 1.31897 0.86455 0.80121 0.79691 0.80826 1.19336 1.21589 1.17158 1.22222 0.97735 1.07851 0.87568 1.66474 1.06024 1.16296 1.32878 0.91618 0.90517 0.91416 0.91562 0.91327 0.87346 0.89361 0.84916 0.84981 0.84943 0.82718 0.76922 0.88353 0.87102 0.90577 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.75 10.03 -39.25 -0.39 -5.14 16 4 C 0.43 6.76 7.12 36.01 0.26 7.02 16 5 O -0.48 -9.46 16.10 -18.75 -0.30 -9.76 16 6 C 0.19 2.77 2.10 -69.08 -0.15 2.62 16 7 H 0.13 1.93 6.06 -51.93 -0.31 1.62 16 8 C -0.07 -0.75 5.12 -27.88 -0.14 -0.89 16 9 C 0.14 1.66 5.90 -82.59 -0.49 1.17 16 10 C -0.17 -1.69 9.71 -39.44 -0.38 -2.07 16 11 C -0.07 -0.68 10.18 -39.28 -0.40 -1.08 16 12 C -0.18 -1.72 10.11 -39.44 -0.40 -2.12 16 13 C 0.11 1.21 11.18 -17.55 -0.20 1.02 16 14 N -0.47 -6.20 9.78 -9.47 -0.09 -6.30 16 15 N -0.71 -12.70 4.45 -54.99 -0.24 -12.94 16 16 C 0.28 6.36 7.52 -155.14 -1.17 5.19 16 17 C -0.18 -3.99 9.07 -39.64 -0.36 -4.35 16 18 C -0.14 -3.26 9.88 -39.01 -0.39 -3.65 16 19 C 0.01 0.39 5.12 -106.65 -0.55 -0.16 16 20 C -0.44 -12.25 9.58 -37.85 -0.36 -12.61 16 21 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 22 C 0.08 2.28 5.41 -17.33 -0.09 2.19 16 23 N -0.81 -22.15 13.93 55.54 0.77 -21.37 16 24 Si 0.90 21.81 24.52 -169.99 -4.17 17.65 16 25 H -0.27 -6.29 6.71 56.52 0.38 -5.91 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.25 -6.39 6.85 56.52 0.39 -6.00 16 28 C 0.00 0.13 8.37 -16.75 -0.14 -0.01 16 29 N -0.50 -12.54 10.37 -11.79 -0.12 -12.66 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.11 1.00 7.99 -51.93 -0.42 0.58 16 36 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 37 H 0.13 1.03 7.95 -52.49 -0.42 0.62 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 41 H 0.40 6.66 8.72 -40.82 -0.36 6.31 16 42 H 0.10 1.93 6.10 -52.49 -0.32 1.61 16 43 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 44 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 45 H 0.13 3.42 4.72 -52.49 -0.25 3.17 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -33.60 381.41 -9.02 -42.62 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.88 Total: 9.79 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -4.34 Total: -7.63 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.31 Total: -53.28 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.70 Total: -14.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.17 Total: 17.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.60 -9.02 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170829251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.817 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds