Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45196 * 109.46840 * 2 1 4 4 C 1.34226 * 116.99727 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00472 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99952 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47196 * 60.00513 * 6 4 3 8 8 C 1.53004 * 109.47236 * 300.00211 * 6 4 3 9 9 C 1.50701 * 109.47045 * 175.00138 * 8 6 4 10 10 C 1.38223 * 119.61713 * 125.00286 * 9 8 6 11 11 C 1.38632 * 119.16191 * 179.97438 * 10 9 8 12 12 C 1.38665 * 118.41872 * 359.97438 * 11 10 9 13 13 C 1.38183 * 119.16239 * 0.27722 * 12 11 10 14 14 N 1.31846 * 119.61732 * 304.97898 * 9 8 6 15 15 N 1.46509 * 109.47091 * 180.02562 * 6 4 3 16 16 C 1.38361 * 120.00225 * 274.99841 * 15 6 4 17 17 C 1.39711 * 119.42857 * 359.72775 * 16 15 6 18 18 C 1.36562 * 119.49200 * 179.75991 * 17 16 15 19 19 C 1.41331 * 118.40888 * 0.50518 * 18 17 16 20 20 C 1.41197 * 120.56958 * 179.76301 * 19 18 17 21 21 H 1.08003 * 120.00257 * 330.33527 * 20 19 18 22 22 C 1.39872 * 119.99511 * 150.33260 * 20 19 18 23 23 N 1.30907 * 119.99650 * 161.77788 * 22 20 19 24 24 Si 1.86799 * 120.00262 * 341.77404 * 22 20 19 25 25 H 1.48494 * 109.46855 * 95.41097 * 24 22 20 26 26 H 1.48499 * 109.47125 * 215.40836 * 24 22 20 27 27 H 1.48491 * 109.47148 * 335.40868 * 24 22 20 28 28 C 1.40757 * 118.85670 * 359.74058 * 19 18 17 29 29 N 1.31488 * 120.36737 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47173 * 59.99762 * 1 2 3 31 31 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47079 * 299.99627 * 1 2 3 33 33 H 1.09004 * 109.46935 * 239.99846 * 2 1 3 34 34 H 1.09000 * 109.47173 * 120.00238 * 2 1 3 35 35 H 1.08998 * 109.46932 * 55.00185 * 8 6 4 36 36 H 1.09006 * 109.47082 * 294.99971 * 8 6 4 37 37 H 1.08001 * 120.42038 * 359.95106 * 10 9 8 38 38 H 1.08004 * 120.78955 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.42158 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.61531 * 179.70233 * 13 12 11 41 41 H 0.97001 * 119.99567 * 95.00005 * 15 6 4 42 42 H 1.07997 * 120.25367 * 0.02562 * 17 16 15 43 43 H 1.08002 * 120.79810 * 180.22349 * 18 17 16 44 44 H 0.96994 * 119.99871 * 180.02562 * 23 22 20 45 45 H 1.07997 * 119.81408 * 179.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4692 0.8912 8 6 3.4495 3.6848 -1.2480 9 6 3.9237 5.1139 -1.1871 10 6 4.6658 5.6326 -2.2315 11 6 5.0966 6.9486 -2.1658 12 6 4.7630 7.6972 -1.0473 13 6 4.0224 7.1091 -0.0398 14 7 3.6254 5.8552 -0.1383 15 7 5.3838 2.8607 0.0010 16 6 6.0693 2.7197 1.1946 17 6 5.3546 2.6574 2.3935 18 6 6.0296 2.5133 3.5718 19 6 7.4406 2.4427 3.5342 20 6 8.1845 2.2988 4.7257 21 1 7.8036 2.7025 5.6522 22 6 9.4146 1.6334 4.7060 23 7 10.2635 1.7978 5.6888 24 14 9.8461 0.5099 3.2773 25 1 10.6489 1.2630 2.2805 26 1 10.6342 -0.6454 3.7766 27 1 8.5984 0.0192 2.6391 28 6 8.0915 2.5178 2.2884 29 7 7.3948 2.6519 1.1814 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3607 3.6648 -1.2943 36 1 3.8598 3.2034 -2.1358 37 1 4.9072 5.0203 -3.0877 38 1 5.6776 7.3808 -2.9672 39 1 5.0814 8.7257 -0.9627 40 1 3.7625 7.6839 0.8368 41 1 5.8718 2.9088 -0.8358 42 1 4.2764 2.7184 2.3880 43 1 5.4981 2.4592 4.5105 44 1 11.1167 1.3367 5.6750 45 1 9.1693 2.4659 2.2417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170829251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = -33.530104 kcal Electronic energy + Delta-G solvation = -29242.501840 eV Core-core repulsion = 25224.135521 eV Total energy + Delta-G solvation = -4018.366319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87020 -40.96510 -40.57279 -38.07465 -37.06832 -35.64077 -33.97976 -33.23927 -33.10044 -32.61839 -31.53226 -30.03171 -26.79291 -26.27520 -24.56741 -24.37143 -23.84819 -22.80538 -22.65629 -21.62083 -19.56789 -18.88376 -18.56548 -18.14989 -17.66688 -17.45490 -17.29056 -17.07089 -16.52132 -16.23514 -15.84997 -15.41491 -15.17546 -14.99450 -14.90187 -14.82751 -14.51533 -14.34531 -14.11036 -13.75961 -13.69140 -13.58584 -13.33551 -13.09110 -12.90409 -12.78103 -12.69679 -12.56578 -12.46824 -12.25099 -11.97334 -11.78935 -11.51305 -11.32635 -10.76175 -10.68245 -10.44354 -10.30556 -10.09790 -9.84164 -8.89235 -8.75583 -6.34961 0.22556 0.44737 0.60661 0.75712 1.12950 1.23358 1.33706 1.42869 1.56794 2.08249 2.36611 2.64453 2.90102 3.31671 3.48876 3.52741 3.81538 3.87374 3.94726 4.01407 4.10035 4.11463 4.15705 4.26321 4.30872 4.32413 4.36148 4.42865 4.57932 4.65970 4.68757 4.83509 4.86862 4.93132 4.95241 5.01819 5.10148 5.15553 5.28172 5.34742 5.40814 5.41268 5.44924 5.85330 5.86946 6.10887 6.32372 6.49683 6.72538 6.74548 6.85665 7.12126 7.57866 8.19816 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008582 B = 0.003942 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.922027 B = 7101.059198 C = 9350.848705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.441 3.559 5 O -0.528 6.528 6 C 0.189 3.811 7 H 0.120 0.880 8 C -0.060 4.060 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.079 4.079 12 C -0.179 4.179 13 C 0.084 3.916 14 N -0.504 5.504 15 N -0.702 5.702 16 C 0.303 3.697 17 C -0.184 4.184 18 C -0.133 4.133 19 C -0.009 4.009 20 C -0.473 4.473 21 H 0.065 0.935 22 C 0.056 3.944 23 N -0.848 5.848 24 Si 0.953 3.047 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.005 4.005 29 N -0.524 5.524 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.403 0.597 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.293 0.707 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 6.111 -18.240 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.282 3.718 5 O -0.416 6.416 6 C 0.079 3.921 7 H 0.138 0.862 8 C -0.098 4.098 9 C -0.018 4.018 10 C -0.191 4.191 11 C -0.104 4.104 12 C -0.199 4.199 13 C -0.073 4.073 14 N -0.214 5.214 15 N -0.339 5.339 16 C 0.068 3.932 17 C -0.208 4.208 18 C -0.160 4.160 19 C -0.014 4.014 20 C -0.504 4.504 21 H 0.083 0.917 22 C -0.158 4.158 23 N -0.475 5.475 24 Si 0.778 3.222 25 H -0.184 1.184 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.162 4.162 29 N -0.239 5.239 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.183 0.817 41 H 0.239 0.761 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.875 5.444 -18.079 26.000 hybrid contribution 1.022 -0.456 0.101 1.124 sum -16.853 4.988 -17.978 25.141 Atomic orbital electron populations 1.21810 0.89892 1.04294 1.03995 1.23281 0.97377 0.79568 1.02099 1.86522 1.23446 1.33369 1.83606 1.25212 0.80934 0.93879 0.71811 1.90697 1.61346 1.43980 1.45533 1.20348 0.80392 0.87824 1.03500 0.86237 1.20761 1.04125 0.89046 0.95866 1.21022 0.94962 0.95431 0.90377 1.22245 0.99064 0.97212 1.00541 1.21961 0.96468 0.93738 0.98275 1.22447 0.99731 1.02704 0.94980 1.23069 0.94381 0.90777 0.99041 1.67338 1.21973 1.07307 1.24786 1.43390 1.02853 1.82354 1.05348 1.17979 0.87831 1.00673 0.86707 1.20993 0.99775 1.07804 0.92203 1.21282 0.93368 1.03492 0.97847 1.18577 0.93356 0.95603 0.93896 1.19169 1.02466 1.33692 0.95046 0.91715 1.26513 0.94345 0.96555 0.98420 1.69726 1.07804 1.36742 1.33241 0.85690 0.78922 0.78862 0.78725 1.18373 1.19593 1.19891 1.22194 0.97862 1.08230 0.87895 1.66550 1.07101 1.17960 1.32335 0.90489 0.88473 0.91373 0.91240 0.92612 0.85516 0.87194 0.82611 0.82306 0.82612 0.81678 0.76077 0.85488 0.85667 0.89610 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.29 71.99 0.74 -1.06 16 2 C 0.05 1.02 6.19 71.99 0.45 1.47 16 3 O -0.35 -8.46 10.03 -51.38 -0.52 -8.97 16 4 C 0.44 12.94 7.12 71.24 0.51 13.44 16 5 O -0.53 -19.95 16.10 21.96 0.35 -19.60 16 6 C 0.19 5.10 2.10 44.24 0.09 5.19 16 7 H 0.12 3.44 6.06 -2.39 -0.01 3.43 16 8 C -0.06 -1.11 5.12 29.85 0.15 -0.96 16 9 C 0.12 2.53 5.90 42.55 0.25 2.78 16 10 C -0.17 -2.95 9.71 22.36 0.22 -2.73 16 11 C -0.08 -1.24 10.18 22.47 0.23 -1.01 16 12 C -0.18 -3.04 10.11 22.36 0.23 -2.81 16 13 C 0.08 1.77 11.18 84.67 0.95 2.72 16 14 N -0.50 -12.40 9.78 -183.89 -1.80 -14.20 16 15 N -0.70 -23.74 4.45 -327.88 -1.46 -25.20 16 16 C 0.30 13.27 7.52 133.32 1.00 14.28 16 17 C -0.18 -8.01 9.07 22.23 0.20 -7.81 16 18 C -0.13 -6.42 9.88 22.64 0.22 -6.20 16 19 C -0.01 -0.48 5.12 -21.18 -0.11 -0.59 16 20 C -0.47 -27.19 9.58 23.39 0.22 -26.97 16 21 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 22 C 0.06 3.10 5.41 85.23 0.46 3.56 16 23 N -0.85 -47.39 13.93 21.82 0.30 -47.09 16 24 Si 0.95 45.83 24.52 68.60 1.68 47.51 16 25 H -0.26 -11.89 6.71 99.48 0.67 -11.22 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.27 -14.23 6.85 99.48 0.68 -13.54 16 28 C -0.01 -0.28 8.37 85.36 0.71 0.43 16 29 N -0.52 -25.91 10.37 -191.21 -1.98 -27.90 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.37 8.13 -2.38 -0.02 1.35 16 34 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 35 H 0.13 1.91 7.99 -2.39 -0.02 1.89 16 36 H 0.11 1.57 7.87 -2.38 -0.02 1.55 16 37 H 0.16 1.84 7.95 -2.91 -0.02 1.82 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.40 12.68 8.72 -92.71 -0.81 11.87 16 42 H 0.13 4.74 6.10 -2.91 -0.02 4.73 16 43 H 0.13 5.55 8.06 -2.91 -0.02 5.53 16 44 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 45 H 0.13 6.69 4.72 -2.91 -0.01 6.68 16 Total: -1.00 -74.40 381.41 3.27 -71.13 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.16 Total: 30.58 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 6.53 Total: -6.27 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -4.94 Total: -114.39 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.16 Total: -28.57 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.68 Total: 47.51 kcal Total: -74.40 3.27 -71.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170829251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.603 kcal (2) G-P(sol) polarization free energy of solvation -74.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds