Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47204 * 2 1 4 4 C 1.34231 * 117.00164 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99605 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99860 * 179.97438 * 4 3 2 7 7 H 1.08991 * 109.47194 * 299.99356 * 6 4 3 8 8 C 1.53001 * 109.47079 * 59.99805 * 6 4 3 9 9 C 1.50704 * 109.46769 * 185.00088 * 8 6 4 10 10 C 1.38220 * 119.61957 * 124.97804 * 9 8 6 11 11 C 1.38633 * 119.16161 * 179.79153 * 10 9 8 12 12 C 1.38674 * 118.41666 * 0.46595 * 11 10 9 13 13 C 1.38174 * 119.16532 * 359.51416 * 12 11 10 14 14 N 1.31860 * 119.61381 * 304.99291 * 9 8 6 15 15 N 1.46507 * 109.46527 * 179.97438 * 6 4 3 16 16 C 1.38372 * 119.99861 * 85.00128 * 15 6 4 17 17 C 1.39705 * 119.42734 * 359.72442 * 16 15 6 18 18 C 1.36573 * 119.48683 * 179.76668 * 17 16 15 19 19 C 1.41313 * 118.40956 * 0.49381 * 18 17 16 20 20 C 1.41204 * 120.57404 * 179.77106 * 19 18 17 21 21 H 1.08001 * 119.99431 * 330.33293 * 20 19 18 22 22 C 1.39869 * 120.00451 * 150.33737 * 20 19 18 23 23 N 1.30894 * 120.00142 * 161.77464 * 22 20 19 24 24 Si 1.86798 * 119.99854 * 341.77364 * 22 20 19 25 25 H 1.48505 * 109.47082 * 95.40932 * 24 22 20 26 26 H 1.48500 * 109.47073 * 215.41059 * 24 22 20 27 27 H 1.48503 * 109.47202 * 335.40696 * 24 22 20 28 28 C 1.40760 * 118.85893 * 359.74951 * 19 18 17 29 29 N 1.31479 * 120.37007 * 359.97438 * 28 19 18 30 30 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47137 * 300.00708 * 1 2 3 32 32 H 1.09000 * 109.47018 * 60.00397 * 1 2 3 33 33 H 1.08995 * 109.47374 * 239.99789 * 2 1 3 34 34 H 1.09000 * 109.47018 * 119.99603 * 2 1 3 35 35 H 1.09000 * 109.47370 * 64.99929 * 8 6 4 36 36 H 1.08996 * 109.46829 * 304.99460 * 8 6 4 37 37 H 1.07998 * 120.41883 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.78990 * 180.23511 * 11 10 9 39 39 H 1.08006 * 120.41467 * 179.78519 * 12 11 10 40 40 H 1.08004 * 119.62285 * 180.25442 * 13 12 11 41 41 H 0.96998 * 119.99844 * 264.99352 * 15 6 4 42 42 H 1.07996 * 120.26152 * 359.97438 * 17 16 15 43 43 H 1.08001 * 120.79235 * 180.22646 * 18 17 16 44 44 H 0.97004 * 120.00242 * 179.97438 * 23 22 20 45 45 H 1.08007 * 119.81104 * 179.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5845 3.4693 -0.8912 8 6 3.4495 3.6848 1.2480 9 6 3.9236 5.1140 1.1870 10 6 3.0077 6.1430 1.3002 11 6 3.4548 7.4542 1.2472 12 6 4.8113 7.6823 1.0716 13 6 5.6675 6.6029 0.9663 14 7 5.2074 5.3684 1.0259 15 7 5.3838 2.8607 -0.0010 16 6 6.0692 2.7196 -1.1947 17 6 5.3539 2.6458 -2.3925 18 6 6.0294 2.5114 -3.5718 19 6 7.4403 2.4408 -3.5341 20 6 8.1843 2.2969 -4.7256 21 1 7.7551 1.7795 -5.5710 22 6 9.4769 2.8242 -4.8111 23 7 10.2950 2.4038 -5.7423 24 14 10.0357 4.1285 -3.5963 25 1 10.7651 3.4816 -2.4761 26 1 10.9348 5.0911 -4.2821 27 1 8.8514 4.8499 -3.0648 28 6 8.0913 2.5169 -2.2885 29 7 7.3948 2.6518 -1.1815 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8598 3.2035 2.1358 36 1 2.3607 3.6648 1.2942 37 1 1.9575 5.9282 1.4314 38 1 2.7626 8.2783 1.3367 39 1 5.1942 8.6910 1.0221 40 1 6.7260 6.7721 0.8335 41 1 5.8719 2.9089 0.8358 42 1 4.2752 2.6980 -2.3862 43 1 5.4978 2.4559 -4.5103 44 1 11.1914 2.7697 -5.8019 45 1 9.1691 2.4641 -2.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170829252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = -8.756055 kcal Electronic energy + Delta-G solvation = -29328.727081 eV Core-core repulsion = 25311.435045 eV Total energy + Delta-G solvation = -4017.292035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69118 -40.07140 -38.71812 -36.79158 -35.68794 -33.79192 -32.56067 -32.39501 -31.82788 -31.23419 -29.99783 -28.57130 -25.65685 -24.47021 -23.56291 -23.15812 -22.49792 -21.78061 -20.91732 -20.29530 -17.77025 -17.46961 -17.05105 -17.00722 -16.42224 -16.25453 -16.10452 -15.78051 -15.43831 -14.94554 -14.33667 -14.09454 -13.82341 -13.69701 -13.42575 -13.38101 -13.11444 -12.99491 -12.86772 -12.68735 -12.59141 -12.14425 -12.02788 -11.82195 -11.76226 -11.64918 -11.56269 -11.08500 -10.78745 -10.53674 -10.39072 -10.38202 -9.95990 -9.93920 -9.51051 -9.29818 -9.08518 -8.83155 -8.48276 -8.08052 -6.84652 -6.82641 -4.24418 0.98950 1.21301 2.36132 2.50407 2.64024 2.84605 3.21175 3.28813 3.39813 3.71441 3.90159 4.06026 4.12767 4.47889 4.66002 4.75729 4.75940 4.79644 4.83596 4.94278 4.95805 5.00047 5.10041 5.15079 5.36621 5.46182 5.53715 5.58781 5.61395 5.63036 5.69200 5.78307 5.86460 5.99844 6.05965 6.16778 6.31719 6.50126 6.56244 6.60732 6.96222 7.10066 7.32674 7.37380 7.81432 7.93337 8.00055 8.09069 8.37920 8.46164 8.70955 8.85884 9.56379 10.20631 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.004086 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.696095 B = 6851.027327 C = 9420.236333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.431 3.569 5 O -0.482 6.482 6 C 0.193 3.807 7 H 0.111 0.889 8 C -0.070 4.070 9 C 0.129 3.871 10 C -0.169 4.169 11 C -0.078 4.078 12 C -0.178 4.178 13 C 0.108 3.892 14 N -0.453 5.453 15 N -0.695 5.695 16 C 0.295 3.705 17 C -0.190 4.190 18 C -0.135 4.135 19 C 0.011 3.989 20 C -0.445 4.445 21 H 0.088 0.912 22 C 0.083 3.917 23 N -0.817 5.817 24 Si 0.904 3.096 25 H -0.267 1.267 26 H -0.290 1.290 27 H -0.249 1.249 28 C 0.010 3.990 29 N -0.501 5.501 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.404 0.596 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.283 0.717 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.280 7.109 14.512 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.269 3.731 5 O -0.366 6.366 6 C 0.080 3.920 7 H 0.128 0.872 8 C -0.109 4.109 9 C -0.010 4.010 10 C -0.189 4.189 11 C -0.104 4.104 12 C -0.198 4.198 13 C -0.049 4.049 14 N -0.162 5.162 15 N -0.332 5.332 16 C 0.063 3.937 17 C -0.213 4.213 18 C -0.162 4.162 19 C 0.006 3.994 20 C -0.476 4.476 21 H 0.106 0.894 22 C -0.134 4.134 23 N -0.442 5.442 24 Si 0.731 3.269 25 H -0.193 1.193 26 H -0.218 1.218 27 H -0.172 1.172 28 C -0.149 4.149 29 N -0.215 5.215 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.240 0.760 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.934 6.106 14.952 23.402 hybrid contribution -0.414 1.005 -0.205 1.107 sum -17.348 7.112 14.747 23.854 Atomic orbital electron populations 1.21790 0.92857 1.02763 1.03346 1.22964 0.95078 0.80906 1.02538 1.86515 1.25224 1.31975 1.84525 1.25319 0.80293 0.94369 0.73087 1.90698 1.60238 1.42598 1.43026 1.19998 0.83547 0.87968 1.00462 0.87200 1.20767 1.01928 0.90442 0.97747 1.20970 0.89402 0.95124 0.95461 1.21940 1.00846 0.93234 1.02903 1.21526 0.95798 0.96919 0.96154 1.22169 0.94501 1.00817 1.02308 1.22833 1.00555 0.87416 0.94133 1.67596 1.15315 1.23258 1.09994 1.43169 1.00703 1.82501 1.06872 1.17555 0.88148 1.03047 0.84942 1.20689 0.97980 1.09582 0.93089 1.20951 0.94310 1.04761 0.96186 1.18482 0.92474 0.94256 0.94194 1.19187 0.97416 1.31834 0.99122 0.89360 1.26041 0.95390 0.96509 0.95438 1.69721 1.06611 1.36535 1.31346 0.86431 0.79586 0.81025 0.79833 1.19341 1.21762 1.17246 1.22254 0.97880 1.07624 0.87129 1.66509 1.06010 1.16286 1.32661 0.90509 0.91631 0.91486 0.91334 0.91525 0.88955 0.87748 0.84825 0.85052 0.85027 0.82809 0.75959 0.88717 0.87311 0.90672 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.37 -4.56 10.03 -39.26 -0.39 -4.95 16 4 C 0.43 6.58 7.09 36.01 0.26 6.83 16 5 O -0.48 -9.30 16.10 -18.75 -0.30 -9.60 16 6 C 0.19 2.75 2.15 -69.08 -0.15 2.60 16 7 H 0.11 1.58 6.43 -51.93 -0.33 1.24 16 8 C -0.07 -0.74 5.15 -27.88 -0.14 -0.88 16 9 C 0.13 1.49 6.18 -82.58 -0.51 0.98 16 10 C -0.17 -1.56 9.71 -39.44 -0.38 -1.94 16 11 C -0.08 -0.68 10.18 -39.27 -0.40 -1.08 16 12 C -0.18 -1.73 10.11 -39.44 -0.40 -2.13 16 13 C 0.11 1.34 11.18 -17.55 -0.20 1.14 16 14 N -0.45 -6.36 8.57 -9.47 -0.08 -6.45 16 15 N -0.69 -12.61 3.50 -54.99 -0.19 -12.80 16 16 C 0.30 6.65 7.52 -155.13 -1.17 5.48 16 17 C -0.19 -4.21 9.06 -39.64 -0.36 -4.57 16 18 C -0.14 -3.27 9.88 -39.01 -0.39 -3.65 16 19 C 0.01 0.30 5.12 -106.65 -0.55 -0.24 16 20 C -0.45 -12.41 9.58 -37.85 -0.36 -12.77 16 21 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 22 C 0.08 2.25 5.41 -17.34 -0.09 2.16 16 23 N -0.82 -22.41 13.93 55.54 0.77 -21.64 16 24 Si 0.90 21.56 24.52 -169.99 -4.17 17.40 16 25 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.25 -6.17 6.86 56.52 0.39 -5.78 16 28 C 0.01 0.26 8.37 -16.75 -0.14 0.12 16 29 N -0.50 -12.57 10.37 -11.79 -0.12 -12.69 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.79 7.72 -51.93 -0.40 0.39 16 37 H 0.13 0.85 7.95 -52.49 -0.42 0.43 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.15 1.77 8.06 -52.48 -0.42 1.34 16 41 H 0.40 7.29 8.34 -40.82 -0.34 6.95 16 42 H 0.09 1.83 6.10 -52.49 -0.32 1.51 16 43 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 44 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 45 H 0.13 3.43 4.72 -52.48 -0.25 3.18 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -33.64 379.53 -9.01 -42.66 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.88 Total: 10.14 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -4.37 Total: -7.80 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.38 Total: -53.57 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.70 Total: -14.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.64 -9.01 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170829252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.901 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds