Wall clock time and date at job start Sat Apr 11 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47204 * 2 1 4 4 C 1.34231 * 117.00164 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99605 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99860 * 179.97438 * 4 3 2 7 7 H 1.08991 * 109.47194 * 299.99356 * 6 4 3 8 8 C 1.53001 * 109.47079 * 59.99805 * 6 4 3 9 9 C 1.50704 * 109.46769 * 185.00088 * 8 6 4 10 10 C 1.38220 * 119.61957 * 124.97804 * 9 8 6 11 11 C 1.38633 * 119.16161 * 179.79153 * 10 9 8 12 12 C 1.38674 * 118.41666 * 0.46595 * 11 10 9 13 13 C 1.38174 * 119.16532 * 359.51416 * 12 11 10 14 14 N 1.31860 * 119.61381 * 304.99291 * 9 8 6 15 15 N 1.46507 * 109.46527 * 179.97438 * 6 4 3 16 16 C 1.38372 * 119.99861 * 85.00128 * 15 6 4 17 17 C 1.39705 * 119.42734 * 359.72442 * 16 15 6 18 18 C 1.36573 * 119.48683 * 179.76668 * 17 16 15 19 19 C 1.41313 * 118.40956 * 0.49381 * 18 17 16 20 20 C 1.41204 * 120.57404 * 179.77106 * 19 18 17 21 21 H 1.08001 * 119.99431 * 330.33293 * 20 19 18 22 22 C 1.39869 * 120.00451 * 150.33737 * 20 19 18 23 23 N 1.30894 * 120.00142 * 161.77464 * 22 20 19 24 24 Si 1.86798 * 119.99854 * 341.77364 * 22 20 19 25 25 H 1.48505 * 109.47082 * 95.40932 * 24 22 20 26 26 H 1.48500 * 109.47073 * 215.41059 * 24 22 20 27 27 H 1.48503 * 109.47202 * 335.40696 * 24 22 20 28 28 C 1.40760 * 118.85893 * 359.74951 * 19 18 17 29 29 N 1.31479 * 120.37007 * 359.97438 * 28 19 18 30 30 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47137 * 300.00708 * 1 2 3 32 32 H 1.09000 * 109.47018 * 60.00397 * 1 2 3 33 33 H 1.08995 * 109.47374 * 239.99789 * 2 1 3 34 34 H 1.09000 * 109.47018 * 119.99603 * 2 1 3 35 35 H 1.09000 * 109.47370 * 64.99929 * 8 6 4 36 36 H 1.08996 * 109.46829 * 304.99460 * 8 6 4 37 37 H 1.07998 * 120.41883 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.78990 * 180.23511 * 11 10 9 39 39 H 1.08006 * 120.41467 * 179.78519 * 12 11 10 40 40 H 1.08004 * 119.62285 * 180.25442 * 13 12 11 41 41 H 0.96998 * 119.99844 * 264.99352 * 15 6 4 42 42 H 1.07996 * 120.26152 * 359.97438 * 17 16 15 43 43 H 1.08001 * 120.79235 * 180.22646 * 18 17 16 44 44 H 0.97004 * 120.00242 * 179.97438 * 23 22 20 45 45 H 1.08007 * 119.81104 * 179.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5845 3.4693 -0.8912 8 6 3.4495 3.6848 1.2480 9 6 3.9236 5.1140 1.1870 10 6 3.0077 6.1430 1.3002 11 6 3.4548 7.4542 1.2472 12 6 4.8113 7.6823 1.0716 13 6 5.6675 6.6029 0.9663 14 7 5.2074 5.3684 1.0259 15 7 5.3838 2.8607 -0.0010 16 6 6.0692 2.7196 -1.1947 17 6 5.3539 2.6458 -2.3925 18 6 6.0294 2.5114 -3.5718 19 6 7.4403 2.4408 -3.5341 20 6 8.1843 2.2969 -4.7256 21 1 7.7551 1.7795 -5.5710 22 6 9.4769 2.8242 -4.8111 23 7 10.2950 2.4038 -5.7423 24 14 10.0357 4.1285 -3.5963 25 1 10.7651 3.4816 -2.4761 26 1 10.9348 5.0911 -4.2821 27 1 8.8514 4.8499 -3.0648 28 6 8.0913 2.5169 -2.2885 29 7 7.3948 2.6518 -1.1815 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8598 3.2035 2.1358 36 1 2.3607 3.6648 1.2942 37 1 1.9575 5.9282 1.4314 38 1 2.7626 8.2783 1.3367 39 1 5.1942 8.6910 1.0221 40 1 6.7260 6.7721 0.8335 41 1 5.8719 2.9089 0.8358 42 1 4.2752 2.6980 -2.3862 43 1 5.4978 2.4559 -4.5103 44 1 11.1914 2.7697 -5.8019 45 1 9.1691 2.4641 -2.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170829252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:14 Heat of formation + Delta-G solvation = -29.394248 kcal Electronic energy + Delta-G solvation = -29329.622020 eV Core-core repulsion = 25311.435045 eV Total energy + Delta-G solvation = -4018.186975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83853 -40.95337 -40.52172 -38.02281 -37.02146 -35.60626 -33.91079 -33.22522 -33.07577 -32.58889 -31.50310 -29.97499 -26.75840 -26.20315 -24.49910 -24.36769 -23.81134 -22.76352 -22.59349 -21.61890 -19.52949 -18.87009 -18.47741 -18.08777 -17.63621 -17.39998 -17.27374 -16.96050 -16.63877 -16.20798 -15.73010 -15.54980 -15.06451 -15.03799 -14.81130 -14.77034 -14.44947 -14.24912 -14.04491 -13.75569 -13.65782 -13.57895 -13.17445 -13.04656 -12.91538 -12.77645 -12.69922 -12.54431 -12.44445 -12.29052 -11.90560 -11.74143 -11.49017 -11.27391 -10.70864 -10.69495 -10.40736 -10.16077 -10.02381 -9.85016 -8.85799 -8.65322 -6.30807 0.22512 0.48592 0.64149 0.80750 1.15946 1.26482 1.35739 1.45119 1.59660 2.11273 2.47352 2.68177 2.91295 3.31788 3.53479 3.59433 3.82282 3.91320 3.98964 4.03065 4.06084 4.12731 4.14577 4.29883 4.32876 4.34891 4.38679 4.44587 4.60531 4.67922 4.71636 4.86241 4.88931 4.94878 4.97929 5.04977 5.14638 5.18100 5.29974 5.35575 5.43533 5.45044 5.47798 5.87870 5.91088 6.14893 6.40322 6.55227 6.76579 6.78790 6.95368 7.20122 7.66565 8.23505 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008829 B = 0.004086 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.696095 B = 6851.027327 C = 9420.236333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.441 3.559 5 O -0.529 6.529 6 C 0.188 3.812 7 H 0.117 0.883 8 C -0.059 4.059 9 C 0.107 3.893 10 C -0.160 4.160 11 C -0.078 4.078 12 C -0.175 4.175 13 C 0.075 3.925 14 N -0.495 5.495 15 N -0.687 5.687 16 C 0.315 3.685 17 C -0.193 4.193 18 C -0.132 4.132 19 C -0.014 4.014 20 C -0.476 4.476 21 H 0.061 0.939 22 C 0.052 3.948 23 N -0.854 5.854 24 Si 0.958 3.042 25 H -0.264 1.264 26 H -0.270 1.270 27 H -0.266 1.266 28 C -0.001 4.001 29 N -0.526 5.526 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.405 0.595 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.292 0.708 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.115 8.847 16.727 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.281 3.719 5 O -0.416 6.416 6 C 0.077 3.923 7 H 0.134 0.866 8 C -0.097 4.097 9 C -0.031 4.031 10 C -0.179 4.179 11 C -0.104 4.104 12 C -0.194 4.194 13 C -0.081 4.081 14 N -0.205 5.205 15 N -0.323 5.323 16 C 0.080 3.920 17 C -0.216 4.216 18 C -0.159 4.159 19 C -0.019 4.019 20 C -0.507 4.507 21 H 0.079 0.921 22 C -0.162 4.162 23 N -0.481 5.481 24 Si 0.783 3.217 25 H -0.190 1.190 26 H -0.196 1.196 27 H -0.191 1.191 28 C -0.157 4.157 29 N -0.242 5.242 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.241 0.759 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.103 0.897 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.806 7.857 17.184 28.105 hybrid contribution 0.441 0.452 -0.691 0.936 sum -20.365 8.309 16.493 27.491 Atomic orbital electron populations 1.21802 0.89753 1.04250 1.04108 1.23264 0.97423 0.79664 1.01965 1.86501 1.23310 1.33242 1.83663 1.25270 0.80940 0.93909 0.71777 1.90700 1.61456 1.44030 1.45457 1.20329 0.80987 0.87946 1.02994 0.86607 1.20820 1.03990 0.89432 0.95480 1.21191 0.89170 0.96100 0.96655 1.22316 1.02083 0.92715 1.00800 1.21985 0.95712 0.97945 0.94722 1.22415 0.95010 1.01003 1.01009 1.22895 1.00935 0.88133 0.96175 1.67470 1.17115 1.24377 1.11503 1.43332 1.02586 1.81093 1.05333 1.18017 0.87750 0.99504 0.86774 1.20987 0.99729 1.08768 0.92162 1.21259 0.93665 1.03173 0.97754 1.18556 0.93641 0.95920 0.93794 1.19140 0.98650 1.33805 0.99094 0.92116 1.26575 0.95197 0.97640 0.96760 1.69737 1.07406 1.38042 1.32927 0.85609 0.78736 0.79119 0.78235 1.18967 1.19642 1.19066 1.22191 0.97917 1.08136 0.87472 1.66576 1.07318 1.18143 1.32174 0.88701 0.90332 0.91201 0.92716 0.91511 0.88757 0.83924 0.81333 0.81648 0.82921 0.83761 0.75903 0.85292 0.85765 0.89739 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 10.29 71.98 0.74 -0.83 16 2 C 0.05 0.97 6.19 71.98 0.45 1.41 16 3 O -0.35 -7.68 10.03 -51.42 -0.52 -8.19 16 4 C 0.44 12.46 7.09 71.24 0.50 12.97 16 5 O -0.53 -19.92 16.10 21.98 0.35 -19.56 16 6 C 0.19 4.89 2.15 44.24 0.10 4.98 16 7 H 0.12 2.94 6.43 -2.39 -0.02 2.92 16 8 C -0.06 -1.04 5.15 29.85 0.15 -0.88 16 9 C 0.11 2.17 6.18 42.55 0.26 2.43 16 10 C -0.16 -2.23 9.71 22.36 0.22 -2.02 16 11 C -0.08 -1.03 10.18 22.47 0.23 -0.81 16 12 C -0.17 -2.99 10.11 22.36 0.23 -2.76 16 13 C 0.08 1.83 11.18 84.67 0.95 2.77 16 14 N -0.50 -13.40 8.57 -183.88 -1.58 -14.98 16 15 N -0.69 -24.19 3.50 -327.89 -1.15 -25.34 16 16 C 0.31 14.03 7.52 133.31 1.00 15.03 16 17 C -0.19 -8.34 9.06 22.23 0.20 -8.14 16 18 C -0.13 -6.37 9.88 22.64 0.22 -6.15 16 19 C -0.01 -0.75 5.12 -21.18 -0.11 -0.85 16 20 C -0.48 -27.80 9.58 23.39 0.22 -27.57 16 21 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 22 C 0.05 2.90 5.41 85.23 0.46 3.36 16 23 N -0.85 -48.52 13.93 21.82 0.30 -48.22 16 24 Si 0.96 45.87 24.52 68.60 1.68 47.56 16 25 H -0.26 -12.33 6.71 99.48 0.67 -11.66 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.27 -13.35 6.86 99.48 0.68 -12.67 16 28 C 0.00 -0.03 8.37 85.36 0.71 0.68 16 29 N -0.53 -26.74 10.37 -191.20 -1.98 -28.73 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 34 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.14 1.41 7.72 -2.39 -0.02 1.39 16 37 H 0.17 1.11 7.95 -2.91 -0.02 1.08 16 38 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.40 14.40 8.34 -92.71 -0.77 13.63 16 42 H 0.13 4.64 6.10 -2.91 -0.02 4.62 16 43 H 0.12 5.51 8.06 -2.91 -0.02 5.49 16 44 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 45 H 0.12 6.71 4.72 -2.91 -0.01 6.70 16 Total: -1.00 -76.94 379.53 3.85 -73.09 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.19 Total: 30.73 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 6.54 Total: -6.36 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.40 Total: -117.26 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.16 Total: -27.76 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.68 Total: 47.56 kcal Total: -76.94 3.85 -73.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170829252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.693 kcal (2) G-P(sol) polarization free energy of solvation -76.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds