Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.45190 * 109.46885 * 2 1 4 4 C 1.34233 * 117.00157 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99417 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00415 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.47384 * 60.00203 * 6 4 3 8 8 C 1.52996 * 109.47324 * 299.99855 * 6 4 3 9 9 C 1.50697 * 109.47317 * 175.00032 * 8 6 4 10 10 C 1.38227 * 119.61831 * 125.00330 * 9 8 6 11 11 C 1.38630 * 119.15892 * 179.97438 * 10 9 8 12 12 C 1.38668 * 118.42428 * 359.97438 * 11 10 9 13 13 C 1.38180 * 119.16208 * 0.28114 * 12 11 10 14 14 N 1.31855 * 119.61551 * 304.97545 * 9 8 6 15 15 N 1.46502 * 109.47007 * 179.97438 * 6 4 3 16 16 C 1.32215 * 120.00009 * 246.26272 * 15 6 4 17 17 C 1.46911 * 120.83446 * 6.06148 * 16 15 6 18 18 C 1.34374 * 119.37283 * 179.97438 * 17 16 15 19 19 N 1.36429 * 121.21813 * 359.97438 * 18 17 16 20 20 H 0.96995 * 119.09417 * 179.97438 * 19 18 17 21 21 C 1.37766 * 121.82180 * 0.02835 * 19 18 17 22 22 C 1.40173 * 119.74819 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00300 * 199.35401 * 22 21 19 24 24 C 1.40359 * 119.99701 * 19.36067 * 22 21 19 25 25 N 1.30589 * 119.99993 * 21.19810 * 24 22 21 26 26 Si 1.86799 * 119.99804 * 201.20125 * 24 22 21 27 27 H 1.48498 * 109.47460 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46951 * 119.99689 * 26 24 22 29 29 H 1.48499 * 109.47157 * 239.99347 * 26 24 22 30 30 C 1.39074 * 120.51156 * 359.68428 * 21 19 18 31 31 H 1.09001 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47085 * 300.00235 * 1 2 3 33 33 H 1.08997 * 109.46442 * 60.00477 * 1 2 3 34 34 H 1.09000 * 109.47020 * 239.99371 * 2 1 3 35 35 H 1.09000 * 109.46454 * 120.00057 * 2 1 3 36 36 H 1.09000 * 109.47153 * 54.99929 * 8 6 4 37 37 H 1.09005 * 109.47285 * 295.00415 * 8 6 4 38 38 H 1.08003 * 120.42012 * 359.95126 * 10 9 8 39 39 H 1.07999 * 120.78672 * 180.02562 * 11 10 9 40 40 H 1.07999 * 120.41993 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.62256 * 179.69797 * 13 12 11 42 42 H 1.08007 * 120.31698 * 0.02562 * 17 16 15 43 43 H 1.07997 * 119.39702 * 179.97438 * 18 17 16 44 44 H 0.96998 * 119.99662 * 180.02562 * 25 24 22 45 45 H 1.07994 * 120.62907 * 180.28433 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 0.8895 8 6 3.4499 3.6836 -1.2499 9 6 3.9240 5.1128 -1.1902 10 6 4.6663 5.6306 -2.2350 11 6 5.0970 6.9466 -2.1703 12 6 4.7632 7.6963 -1.0526 13 6 4.0225 7.1091 -0.0446 14 7 3.6254 5.8551 -0.1421 15 7 5.3838 2.8607 0.0014 16 6 6.0671 3.2871 1.0498 17 6 5.3778 3.7178 2.2736 18 6 6.1014 4.1455 3.3219 19 7 7.4641 4.1866 3.2709 20 1 7.9558 4.5012 4.0455 21 6 8.1612 3.7948 2.1490 22 6 9.5616 3.8555 2.1438 23 1 10.0985 3.8578 1.2068 24 6 10.2660 3.9132 3.3565 25 7 9.7005 3.5039 4.4601 26 14 12.0122 4.5756 3.3916 27 1 12.4195 4.9707 2.0193 28 1 12.0749 5.7587 4.2870 29 1 12.9306 3.5236 3.8965 30 6 7.4864 3.3338 1.0237 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.3610 3.6636 -1.2964 37 1 3.8602 3.2014 -2.1372 38 1 4.9079 5.0174 -3.0906 39 1 5.6782 7.3781 -2.9720 40 1 5.0816 8.7249 -0.9689 41 1 3.7625 7.6846 0.8314 42 1 4.2995 3.6900 2.3304 43 1 5.5950 4.4625 4.2216 44 1 10.1872 3.5442 5.2982 45 1 8.0311 3.0219 0.1449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170837703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = -32.514111 kcal Electronic energy + Delta-G solvation = -29242.116071 eV Core-core repulsion = 25223.793809 eV Total energy + Delta-G solvation = -4018.322262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54672 -40.88815 -40.30594 -37.78073 -36.81158 -35.62535 -34.04414 -33.15637 -32.61664 -32.42766 -31.23711 -29.18028 -27.81186 -26.27494 -24.35653 -24.05606 -23.34051 -22.68765 -22.64387 -21.03788 -19.82447 -18.64985 -18.43264 -17.96763 -17.52160 -17.36770 -17.06503 -16.85195 -16.33000 -16.23591 -16.14752 -15.50812 -14.97492 -14.88074 -14.63012 -14.49937 -14.37950 -14.07311 -13.72404 -13.65363 -13.54631 -13.32862 -13.27339 -12.93501 -12.80627 -12.66060 -12.55268 -12.46059 -12.41378 -12.29315 -11.90952 -11.70067 -11.52133 -11.34200 -11.04853 -10.66967 -10.25516 -10.04734 -9.75334 -9.32868 -9.03905 -7.82003 -6.67911 0.30031 0.49796 0.88904 0.99125 1.26089 1.40190 1.52009 1.57844 1.85030 2.14515 2.54276 2.87353 2.97876 3.40722 3.54012 3.74101 3.95447 3.97569 4.06612 4.07925 4.12619 4.14376 4.30953 4.33643 4.35388 4.41401 4.49042 4.63013 4.80319 4.82932 4.87836 4.91320 4.91452 4.97910 5.01166 5.03028 5.13413 5.16109 5.34223 5.37440 5.46806 5.60046 5.75497 5.92541 5.95618 6.06490 6.40532 6.46164 6.88328 6.97019 7.15790 7.19158 7.87354 7.97755 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009680 B = 0.003616 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.732068 B = 7740.717671 C = 9682.032959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 O -0.362 6.362 4 C 0.459 3.541 5 O -0.535 6.535 6 C 0.112 3.888 7 H 0.078 0.922 8 C -0.043 4.043 9 C 0.134 3.866 10 C -0.177 4.177 11 C -0.078 4.078 12 C -0.181 4.181 13 C 0.086 3.914 14 N -0.502 5.502 15 N -0.674 5.674 16 C 0.283 3.717 17 C -0.313 4.313 18 C 0.139 3.861 19 N -0.601 5.601 20 H 0.418 0.582 21 C 0.322 3.678 22 C -0.489 4.489 23 H 0.096 0.904 24 C 0.051 3.949 25 N -0.815 5.815 26 Si 0.994 3.006 27 H -0.261 1.261 28 H -0.251 1.251 29 H -0.265 1.265 30 C -0.400 4.400 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.125 0.875 43 H 0.182 0.818 44 H 0.308 0.692 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 7.613 -2.009 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.302 3.698 5 O -0.424 6.424 6 C -0.002 4.002 7 H 0.096 0.904 8 C -0.081 4.081 9 C -0.003 4.003 10 C -0.197 4.197 11 C -0.104 4.104 12 C -0.200 4.200 13 C -0.071 4.071 14 N -0.212 5.212 15 N -0.403 5.403 16 C 0.124 3.876 17 C -0.343 4.343 18 C 0.010 3.990 19 N -0.213 5.213 20 H 0.260 0.740 21 C 0.213 3.787 22 C -0.521 4.521 23 H 0.114 0.886 24 C -0.168 4.168 25 N -0.441 5.441 26 Si 0.813 3.187 27 H -0.184 1.184 28 H -0.175 1.175 29 H -0.190 1.190 30 C -0.429 4.429 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.190 0.810 42 H 0.143 0.857 43 H 0.199 0.801 44 H 0.120 0.880 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.073 6.475 -1.983 12.138 hybrid contribution 1.074 0.125 0.305 1.124 sum -8.999 6.600 -1.678 11.286 Atomic orbital electron populations 1.21797 0.89516 1.04441 1.03869 1.23280 0.97655 0.79873 1.01829 1.86553 1.24006 1.33328 1.83990 1.24961 0.80210 0.93663 0.70975 1.90574 1.61478 1.44214 1.46101 1.20924 0.93130 0.86623 0.99528 0.90425 1.20386 1.00897 0.89690 0.97137 1.20950 0.94267 0.95064 0.90052 1.22117 0.99662 0.97321 1.00585 1.21900 0.96511 0.93228 0.98747 1.22414 1.00088 1.02694 0.94806 1.23140 0.94299 0.90632 0.99019 1.67345 1.22447 1.07259 1.24150 1.73505 1.01543 1.37492 1.27805 1.20349 0.93347 0.85517 0.88434 1.22251 0.99277 1.16242 0.96494 1.21856 0.83427 0.94522 0.99233 1.42056 1.04874 1.57534 1.16859 0.74040 1.17697 0.91751 0.85374 0.83926 1.19757 0.90206 1.46616 0.95506 0.88631 1.26984 1.05930 0.90335 0.93550 1.69355 1.42272 1.30777 1.01709 0.84948 0.74622 0.79020 0.80061 1.18431 1.17487 1.18988 1.20051 0.91420 1.30206 1.01251 0.87975 0.91245 0.90866 0.91875 0.92490 0.88356 0.90518 0.84555 0.82331 0.81981 0.81014 0.85690 0.80078 0.87976 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.29 71.99 0.74 -1.80 16 2 C 0.05 1.33 6.19 71.99 0.45 1.77 16 3 O -0.36 -12.74 10.03 -51.44 -0.52 -13.26 16 4 C 0.46 19.94 7.32 71.23 0.52 20.46 16 5 O -0.54 -27.33 16.18 21.95 0.36 -26.98 16 6 C 0.11 4.85 2.63 44.24 0.12 4.96 16 7 H 0.08 3.40 4.98 -2.39 -0.01 3.39 16 8 C -0.04 -1.55 5.26 29.85 0.16 -1.39 16 9 C 0.13 4.76 5.91 42.55 0.25 5.01 16 10 C -0.18 -5.59 9.71 22.36 0.22 -5.37 16 11 C -0.08 -2.04 10.18 22.47 0.23 -1.81 16 12 C -0.18 -4.45 10.11 22.36 0.23 -4.22 16 13 C 0.09 2.47 11.18 84.67 0.95 3.41 16 14 N -0.50 -17.56 9.79 -183.88 -1.80 -19.36 16 15 N -0.67 -34.73 9.42 -318.15 -3.00 -37.73 16 16 C 0.28 14.80 6.80 42.30 0.29 15.09 16 17 C -0.31 -14.00 9.34 23.66 0.22 -13.78 16 18 C 0.14 5.45 11.15 83.09 0.93 6.38 16 19 N -0.60 -26.29 4.92 -188.19 -0.93 -27.22 16 20 H 0.42 16.99 6.25 -92.71 -0.58 16.41 16 21 C 0.32 16.32 6.40 38.88 0.25 16.57 16 22 C -0.49 -23.73 9.01 23.26 0.21 -23.53 16 23 H 0.10 4.66 7.93 -2.91 -0.02 4.64 16 24 C 0.05 2.15 5.13 85.39 0.44 2.59 16 25 N -0.81 -34.17 11.16 21.90 0.24 -33.93 16 26 Si 0.99 31.89 29.61 68.60 2.03 33.92 16 27 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 28 H -0.25 -7.37 7.11 99.48 0.71 -6.67 16 29 H -0.27 -8.34 7.11 99.48 0.71 -7.63 16 30 C -0.40 -22.07 9.83 23.41 0.23 -21.84 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 35 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 36 H 0.10 3.13 8.00 -2.39 -0.02 3.11 16 37 H 0.08 2.78 7.87 -2.38 -0.02 2.76 16 38 H 0.14 3.94 7.95 -2.91 -0.02 3.91 16 39 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.13 5.26 5.99 -2.91 -0.02 5.24 16 43 H 0.18 5.15 8.06 -2.91 -0.02 5.13 16 44 H 0.31 11.21 8.29 -92.71 -0.77 10.44 16 45 H 0.08 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -70.82 387.09 3.25 -67.57 By element: Atomic # 1 Polarization: 54.03 SS G_CDS: 0.44 Total: 54.47 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 6.41 Total: 2.51 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -5.48 Total: -118.23 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.16 Total: -40.24 kcal Atomic # 14 Polarization: 31.89 SS G_CDS: 2.03 Total: 33.92 kcal Total: -70.82 3.25 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170837703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.055 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds