Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47244 * 2 1 4 4 C 1.34224 * 116.99979 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00304 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99776 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47004 * 299.99913 * 6 4 3 8 8 C 1.53000 * 109.47366 * 60.00065 * 6 4 3 9 9 C 1.50701 * 109.46781 * 185.00001 * 8 6 4 10 10 C 1.38230 * 119.61276 * 124.98006 * 9 8 6 11 11 C 1.38630 * 119.15565 * 179.78514 * 10 9 8 12 12 C 1.38672 * 118.42284 * 0.47746 * 11 10 9 13 13 C 1.38185 * 119.16175 * 359.50014 * 12 11 10 14 14 N 1.31852 * 119.61785 * 304.99779 * 9 8 6 15 15 N 1.46498 * 109.46995 * 180.02562 * 6 4 3 16 16 C 1.32214 * 120.00472 * 114.59200 * 15 6 4 17 17 C 1.46918 * 120.83050 * 5.41492 * 16 15 6 18 18 C 1.34381 * 119.36857 * 179.75359 * 17 16 15 19 19 N 1.36421 * 121.21978 * 0.50911 * 18 17 16 20 20 H 0.96995 * 119.08888 * 179.72122 * 19 18 17 21 21 C 1.37770 * 121.82049 * 359.74409 * 19 18 17 22 22 C 1.40183 * 119.74441 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00041 * 156.45182 * 22 21 19 24 24 C 1.40348 * 120.00012 * 336.44945 * 22 21 19 25 25 N 1.30587 * 119.99912 * 343.11046 * 24 22 21 26 26 Si 1.86793 * 120.00059 * 163.10782 * 24 22 21 27 27 H 1.48503 * 109.47087 * 94.75463 * 26 24 22 28 28 H 1.48504 * 109.47307 * 214.75461 * 26 24 22 29 29 H 1.48497 * 109.47444 * 334.75128 * 26 24 22 30 30 C 1.39070 * 120.51612 * 359.97438 * 21 19 18 31 31 H 1.09002 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47062 * 300.00383 * 1 2 3 33 33 H 1.09004 * 109.46635 * 60.00401 * 1 2 3 34 34 H 1.08996 * 109.47327 * 240.00091 * 2 1 3 35 35 H 1.09004 * 109.46635 * 119.99599 * 2 1 3 36 36 H 1.08996 * 109.46891 * 65.00041 * 8 6 4 37 37 H 1.08997 * 109.46774 * 304.99684 * 8 6 4 38 38 H 1.07992 * 120.42203 * 359.97438 * 10 9 8 39 39 H 1.08005 * 120.78752 * 180.23129 * 11 10 9 40 40 H 1.07998 * 120.42218 * 179.77860 * 12 11 10 41 41 H 1.07999 * 119.61525 * 180.25251 * 13 12 11 42 42 H 1.08004 * 120.31451 * 359.97438 * 17 16 15 43 43 H 1.07997 * 119.38960 * 180.21483 * 18 17 16 44 44 H 0.97003 * 119.99860 * 179.97438 * 25 24 22 45 45 H 1.07992 * 120.62917 * 179.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 3.4487 3.6840 1.2504 9 6 3.9229 5.1132 1.1905 10 6 3.0069 6.1422 1.3038 11 6 3.4540 7.4533 1.2519 12 6 4.8106 7.6816 1.0772 13 6 5.6670 6.6023 0.9719 14 7 5.2067 5.3677 1.0303 15 7 5.3837 2.8607 0.0010 16 6 6.0688 3.3024 -1.0399 17 6 5.3922 3.9803 -2.1540 18 6 6.1180 4.4219 -3.1952 19 7 7.4697 4.2433 -3.2413 20 1 7.9626 4.5710 -4.0097 21 6 8.1538 3.6101 -2.2269 22 6 9.5433 3.4496 -2.3196 23 1 10.1327 3.3182 -1.4242 24 6 10.1686 3.4596 -3.5761 25 7 9.4602 3.2863 -4.6593 26 14 12.0141 3.7208 -3.6989 27 1 12.6976 2.4038 -3.7579 28 1 12.3238 4.4948 -4.9278 29 1 12.4881 4.4716 -2.5086 30 6 7.4766 3.1288 -1.1116 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.8584 3.2022 2.1381 37 1 2.3599 3.6641 1.2959 38 1 1.9566 5.9274 1.4342 39 1 2.7617 8.2775 1.3414 40 1 5.1936 8.6903 1.0286 41 1 6.7254 6.7716 0.8398 42 1 4.3221 4.1254 -2.1347 43 1 5.6214 4.9233 -4.0127 44 1 9.8923 3.2936 -5.5278 45 1 8.0110 2.6318 -0.3156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170837704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = -7.119445 kcal Electronic energy + Delta-G solvation = -29311.560335 eV Core-core repulsion = 25294.339268 eV Total energy + Delta-G solvation = -4017.221067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.06528 -39.60655 -38.50387 -36.23153 -35.11348 -33.89055 -32.46108 -32.00443 -31.54082 -30.59953 -29.79367 -27.49871 -26.03197 -24.81761 -23.19346 -22.83931 -21.63778 -21.35099 -20.98458 -19.42599 -18.03162 -17.06546 -16.64386 -16.58072 -16.19088 -15.95096 -15.75275 -15.30310 -15.06731 -14.85744 -14.37158 -13.87584 -13.65331 -13.50668 -13.14054 -13.01736 -12.83305 -12.79073 -12.67834 -12.41494 -12.01631 -11.88166 -11.64980 -11.54613 -11.46288 -11.31593 -11.15712 -11.02679 -10.84971 -10.57649 -10.23658 -10.20410 -9.82655 -9.65897 -9.52367 -9.40512 -8.73089 -8.62160 -8.19575 -7.45768 -7.25542 -5.92741 -4.72350 1.41062 1.62467 2.59935 2.70622 2.90063 2.91619 2.94972 3.05499 3.38755 3.67707 4.18195 4.33893 4.65681 4.69182 4.91587 5.00462 5.06494 5.11496 5.27515 5.27982 5.38117 5.38690 5.46939 5.52571 5.63174 5.73743 5.80793 5.81887 5.89594 5.96285 5.99013 6.18250 6.27530 6.31980 6.41774 6.49647 6.57083 6.73775 6.81452 6.89419 6.94538 7.04438 7.43040 7.68201 7.79508 8.05021 8.27332 8.33292 8.51508 8.54273 8.83881 8.96000 9.74323 9.77169 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.003639 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.824849 B = 7693.439646 C = 9809.847435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.372 6.372 4 C 0.455 3.545 5 O -0.487 6.487 6 C 0.111 3.889 7 H 0.065 0.935 8 C -0.053 4.053 9 C 0.141 3.859 10 C -0.180 4.180 11 C -0.083 4.083 12 C -0.188 4.188 13 C 0.105 3.895 14 N -0.429 5.429 15 N -0.615 5.615 16 C 0.307 3.693 17 C -0.303 4.303 18 C 0.127 3.873 19 N -0.600 5.600 20 H 0.412 0.588 21 C 0.329 3.671 22 C -0.466 4.466 23 H 0.103 0.897 24 C 0.077 3.923 25 N -0.815 5.815 26 Si 0.922 3.078 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.256 1.256 30 C -0.341 4.341 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.291 0.709 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 6.485 2.979 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.290 6.290 4 C 0.295 3.705 5 O -0.371 6.371 6 C -0.004 4.004 7 H 0.082 0.918 8 C -0.092 4.092 9 C 0.003 3.997 10 C -0.200 4.200 11 C -0.109 4.109 12 C -0.208 4.208 13 C -0.053 4.053 14 N -0.136 5.136 15 N -0.343 5.343 16 C 0.146 3.854 17 C -0.333 4.333 18 C -0.003 4.003 19 N -0.210 5.210 20 H 0.252 0.748 21 C 0.220 3.780 22 C -0.499 4.499 23 H 0.121 0.879 24 C -0.141 4.141 25 N -0.443 5.443 26 Si 0.745 3.255 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.179 1.179 30 C -0.369 4.369 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.168 0.832 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.102 0.898 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.444 5.017 3.560 12.121 hybrid contribution -0.229 1.175 -1.341 1.798 sum -10.674 6.192 2.219 12.537 Atomic orbital electron populations 1.21775 0.93236 1.02427 1.03189 1.22866 0.94796 0.81739 1.02171 1.86551 1.26233 1.31175 1.85010 1.24848 0.79313 0.94029 0.72268 1.90605 1.60167 1.42916 1.43444 1.20801 0.95974 0.86396 0.97224 0.91788 1.20526 0.99072 0.90131 0.99457 1.21172 0.89183 0.95480 0.93846 1.21955 1.00695 0.93406 1.03955 1.21421 0.95723 0.96682 0.97105 1.22105 0.94539 1.00531 1.03648 1.22901 1.00363 0.87697 0.94295 1.67856 1.15181 1.22109 1.08496 1.73671 0.98138 1.37848 1.24679 1.20075 0.93604 0.85863 0.85862 1.22209 0.98663 1.13142 0.99300 1.21177 0.84607 0.96967 0.97587 1.42035 1.05113 1.51187 1.22709 0.74786 1.17621 0.90788 0.84993 0.84591 1.19505 0.91166 1.44987 0.94201 0.87917 1.26183 1.02403 0.90600 0.94962 1.69367 1.39519 1.35390 0.99985 0.86047 0.80594 0.79722 0.79131 1.19048 1.19902 1.17922 1.20199 0.91083 1.22170 1.03488 0.90773 0.91692 0.91727 0.91811 0.91728 0.89523 0.90456 0.85410 0.85615 0.85578 0.83209 0.87252 0.85473 0.89784 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.37 -6.28 10.03 -39.24 -0.39 -6.68 16 4 C 0.45 9.38 7.32 36.01 0.26 9.65 16 5 O -0.49 -11.82 16.18 -18.75 -0.30 -12.12 16 6 C 0.11 2.26 2.72 -69.08 -0.19 2.08 16 7 H 0.06 1.30 5.21 -51.93 -0.27 1.03 16 8 C -0.05 -0.92 5.29 -27.88 -0.15 -1.06 16 9 C 0.14 2.40 6.18 -82.59 -0.51 1.89 16 10 C -0.18 -2.44 9.71 -39.44 -0.38 -2.83 16 11 C -0.08 -1.01 10.18 -39.28 -0.40 -1.41 16 12 C -0.19 -2.45 10.11 -39.44 -0.40 -2.85 16 13 C 0.11 1.71 11.18 -17.55 -0.20 1.51 16 14 N -0.43 -8.19 8.33 -9.47 -0.08 -8.27 16 15 N -0.62 -14.95 8.49 -51.91 -0.44 -15.39 16 16 C 0.31 7.54 6.18 -82.74 -0.51 7.03 16 17 C -0.30 -6.56 9.40 -37.43 -0.35 -6.91 16 18 C 0.13 2.52 11.15 -16.87 -0.19 2.34 16 19 N -0.60 -13.15 4.88 -10.83 -0.05 -13.20 16 20 H 0.41 8.64 6.40 -40.82 -0.26 8.38 16 21 C 0.33 8.06 6.35 -84.16 -0.53 7.53 16 22 C -0.47 -11.13 9.03 -38.06 -0.34 -11.47 16 23 H 0.10 2.41 7.91 -52.48 -0.41 1.99 16 24 C 0.08 1.68 5.17 -17.29 -0.09 1.59 16 25 N -0.81 -18.02 11.16 55.57 0.62 -17.40 16 26 Si 0.92 16.57 29.59 -169.99 -5.03 11.54 16 27 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 28 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 29 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 30 C -0.34 -8.82 9.83 -37.82 -0.37 -9.19 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.08 1.08 7.72 -51.93 -0.40 0.68 16 38 H 0.13 1.39 7.95 -52.49 -0.42 0.97 16 39 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.11 2.20 5.87 -52.48 -0.31 1.89 16 43 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 45 H 0.11 3.08 8.06 -52.49 -0.42 2.65 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -30.74 384.73 -9.48 -40.22 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -5.86 Total: 17.64 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.74 Total: -2.14 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.05 Total: -54.25 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.70 Total: -18.80 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.03 Total: 11.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.74 -9.48 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170837704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.097 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds