Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47244 * 2 1 4 4 C 1.34224 * 116.99979 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00304 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99776 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47004 * 299.99913 * 6 4 3 8 8 C 1.53000 * 109.47366 * 60.00065 * 6 4 3 9 9 C 1.50701 * 109.46781 * 185.00001 * 8 6 4 10 10 C 1.38230 * 119.61276 * 124.98006 * 9 8 6 11 11 C 1.38630 * 119.15565 * 179.78514 * 10 9 8 12 12 C 1.38672 * 118.42284 * 0.47746 * 11 10 9 13 13 C 1.38185 * 119.16175 * 359.50014 * 12 11 10 14 14 N 1.31852 * 119.61785 * 304.99779 * 9 8 6 15 15 N 1.46498 * 109.46995 * 180.02562 * 6 4 3 16 16 C 1.32214 * 120.00472 * 114.59200 * 15 6 4 17 17 C 1.46918 * 120.83050 * 5.41492 * 16 15 6 18 18 C 1.34381 * 119.36857 * 179.75359 * 17 16 15 19 19 N 1.36421 * 121.21978 * 0.50911 * 18 17 16 20 20 H 0.96995 * 119.08888 * 179.72122 * 19 18 17 21 21 C 1.37770 * 121.82049 * 359.74409 * 19 18 17 22 22 C 1.40183 * 119.74441 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00041 * 156.45182 * 22 21 19 24 24 C 1.40348 * 120.00012 * 336.44945 * 22 21 19 25 25 N 1.30587 * 119.99912 * 343.11046 * 24 22 21 26 26 Si 1.86793 * 120.00059 * 163.10782 * 24 22 21 27 27 H 1.48503 * 109.47087 * 94.75463 * 26 24 22 28 28 H 1.48504 * 109.47307 * 214.75461 * 26 24 22 29 29 H 1.48497 * 109.47444 * 334.75128 * 26 24 22 30 30 C 1.39070 * 120.51612 * 359.97438 * 21 19 18 31 31 H 1.09002 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47062 * 300.00383 * 1 2 3 33 33 H 1.09004 * 109.46635 * 60.00401 * 1 2 3 34 34 H 1.08996 * 109.47327 * 240.00091 * 2 1 3 35 35 H 1.09004 * 109.46635 * 119.99599 * 2 1 3 36 36 H 1.08996 * 109.46891 * 65.00041 * 8 6 4 37 37 H 1.08997 * 109.46774 * 304.99684 * 8 6 4 38 38 H 1.07992 * 120.42203 * 359.97438 * 10 9 8 39 39 H 1.08005 * 120.78752 * 180.23129 * 11 10 9 40 40 H 1.07998 * 120.42218 * 179.77860 * 12 11 10 41 41 H 1.07999 * 119.61525 * 180.25251 * 13 12 11 42 42 H 1.08004 * 120.31451 * 359.97438 * 17 16 15 43 43 H 1.07997 * 119.38960 * 180.21483 * 18 17 16 44 44 H 0.97003 * 119.99860 * 179.97438 * 25 24 22 45 45 H 1.07992 * 120.62917 * 179.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 3.4487 3.6840 1.2504 9 6 3.9229 5.1132 1.1905 10 6 3.0069 6.1422 1.3038 11 6 3.4540 7.4533 1.2519 12 6 4.8106 7.6816 1.0772 13 6 5.6670 6.6023 0.9719 14 7 5.2067 5.3677 1.0303 15 7 5.3837 2.8607 0.0010 16 6 6.0688 3.3024 -1.0399 17 6 5.3922 3.9803 -2.1540 18 6 6.1180 4.4219 -3.1952 19 7 7.4697 4.2433 -3.2413 20 1 7.9626 4.5710 -4.0097 21 6 8.1538 3.6101 -2.2269 22 6 9.5433 3.4496 -2.3196 23 1 10.1327 3.3182 -1.4242 24 6 10.1686 3.4596 -3.5761 25 7 9.4602 3.2863 -4.6593 26 14 12.0141 3.7208 -3.6989 27 1 12.6976 2.4038 -3.7579 28 1 12.3238 4.4948 -4.9278 29 1 12.4881 4.4716 -2.5086 30 6 7.4766 3.1288 -1.1116 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.8584 3.2022 2.1381 37 1 2.3599 3.6641 1.2959 38 1 1.9566 5.9274 1.4342 39 1 2.7617 8.2775 1.3414 40 1 5.1936 8.6903 1.0286 41 1 6.7254 6.7716 0.8398 42 1 4.3221 4.1254 -2.1347 43 1 5.6214 4.9233 -4.0127 44 1 9.8923 3.2936 -5.5278 45 1 8.0110 2.6318 -0.3156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170837704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = -25.150175 kcal Electronic energy + Delta-G solvation = -29312.342206 eV Core-core repulsion = 25294.339268 eV Total energy + Delta-G solvation = -4018.002938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52828 -40.86910 -40.23577 -37.74992 -36.77116 -35.56166 -33.96929 -33.11997 -32.59445 -32.35656 -31.20812 -29.12968 -27.74560 -26.23177 -24.32393 -23.99025 -23.30782 -22.61237 -22.59791 -21.03084 -19.78695 -18.63444 -18.37645 -17.90475 -17.57707 -17.24666 -17.00081 -16.88520 -16.45673 -16.17316 -15.96523 -15.39295 -15.07820 -14.81781 -14.59512 -14.48179 -14.25607 -14.04763 -13.64555 -13.62316 -13.54147 -13.21040 -13.18082 -12.94184 -12.79234 -12.70182 -12.52638 -12.45070 -12.35833 -12.30217 -11.87780 -11.52672 -11.50787 -11.32470 -11.05749 -10.62917 -9.96799 -9.92539 -9.78051 -9.20197 -8.96543 -7.70264 -6.60689 0.29110 0.58371 0.95795 1.04712 1.28051 1.41123 1.51378 1.58486 1.88135 2.16582 2.61208 2.94103 3.03339 3.48533 3.59959 3.77438 3.96194 4.00785 4.07732 4.11088 4.12311 4.15153 4.30784 4.33593 4.36741 4.40179 4.55374 4.64880 4.79823 4.87491 4.91931 4.93243 4.96184 4.98458 5.05972 5.08975 5.15359 5.20083 5.35402 5.38254 5.47820 5.65841 5.82803 5.96111 6.00219 6.13177 6.48640 6.52957 6.91199 7.03301 7.21115 7.40332 8.01617 8.05913 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.003639 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.824849 B = 7693.439646 C = 9809.847435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 O -0.359 6.359 4 C 0.460 3.540 5 O -0.535 6.535 6 C 0.108 3.892 7 H 0.069 0.931 8 C -0.044 4.044 9 C 0.111 3.889 10 C -0.169 4.169 11 C -0.076 4.076 12 C -0.174 4.174 13 C 0.074 3.926 14 N -0.479 5.479 15 N -0.646 5.646 16 C 0.295 3.705 17 C -0.317 4.317 18 C 0.137 3.863 19 N -0.600 5.600 20 H 0.417 0.583 21 C 0.322 3.678 22 C -0.496 4.496 23 H 0.092 0.908 24 C 0.050 3.950 25 N -0.825 5.825 26 Si 0.993 3.007 27 H -0.267 1.267 28 H -0.254 1.254 29 H -0.259 1.259 30 C -0.388 4.388 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.180 0.820 44 H 0.305 0.695 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.477 8.882 1.488 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 O -0.276 6.276 4 C 0.303 3.697 5 O -0.423 6.423 6 C -0.006 4.006 7 H 0.086 0.914 8 C -0.083 4.083 9 C -0.027 4.027 10 C -0.189 4.189 11 C -0.102 4.102 12 C -0.193 4.193 13 C -0.083 4.083 14 N -0.188 5.188 15 N -0.373 5.373 16 C 0.133 3.867 17 C -0.347 4.347 18 C 0.007 3.993 19 N -0.211 5.211 20 H 0.258 0.742 21 C 0.213 3.787 22 C -0.529 4.529 23 H 0.110 0.890 24 C -0.167 4.167 25 N -0.452 5.452 26 Si 0.813 3.187 27 H -0.192 1.192 28 H -0.178 1.178 29 H -0.183 1.183 30 C -0.417 4.417 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.179 0.821 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.158 0.842 42 H 0.143 0.857 43 H 0.197 0.803 44 H 0.117 0.883 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.729 7.423 2.067 14.880 hybrid contribution 0.388 0.397 -0.872 1.034 sum -12.341 7.820 1.195 14.659 Atomic orbital electron populations 1.21792 0.89342 1.04417 1.03987 1.23274 0.97720 0.79905 1.01721 1.86523 1.23792 1.33251 1.84068 1.24886 0.80254 0.93574 0.71011 1.90582 1.61545 1.44278 1.45933 1.20897 0.93999 0.86691 0.99054 0.91390 1.20476 1.00833 0.90340 0.96613 1.21209 0.89367 0.95930 0.96234 1.22264 1.01583 0.93105 1.01909 1.21923 0.95846 0.97310 0.95143 1.22402 0.94771 1.00838 1.01332 1.22952 1.00802 0.88206 0.96331 1.67674 1.16993 1.24056 1.10095 1.73496 1.00879 1.37613 1.25299 1.20098 0.93134 0.86443 0.87011 1.22238 0.99440 1.13937 0.99075 1.21830 0.83684 0.95501 0.98241 1.42000 1.05952 1.51021 1.22129 0.74210 1.17658 0.91305 0.84885 0.84834 1.19683 0.91327 1.46652 0.95191 0.89014 1.26902 1.06714 0.89362 0.93767 1.69347 1.41478 1.33640 1.00735 0.84997 0.74642 0.79497 0.79560 1.19189 1.17787 1.18303 1.20069 0.92359 1.25184 1.04115 0.88172 0.90660 0.91105 0.92645 0.92052 0.91795 0.86954 0.82141 0.81247 0.82410 0.84228 0.85711 0.80311 0.88304 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.29 71.98 0.74 -1.61 16 2 C 0.05 1.29 6.19 71.98 0.45 1.74 16 3 O -0.36 -12.03 10.03 -51.36 -0.52 -12.55 16 4 C 0.46 19.62 7.32 71.24 0.52 20.15 16 5 O -0.54 -27.45 16.18 21.98 0.36 -27.10 16 6 C 0.11 4.57 2.72 44.25 0.12 4.69 16 7 H 0.07 2.80 5.21 -2.39 -0.01 2.79 16 8 C -0.04 -1.54 5.29 29.85 0.16 -1.39 16 9 C 0.11 3.75 6.18 42.55 0.26 4.01 16 10 C -0.17 -4.11 9.71 22.36 0.22 -3.89 16 11 C -0.08 -1.57 10.18 22.47 0.23 -1.34 16 12 C -0.17 -4.15 10.11 22.36 0.23 -3.92 16 13 C 0.07 2.48 11.18 84.67 0.95 3.43 16 14 N -0.48 -19.14 8.33 -183.88 -1.53 -20.67 16 15 N -0.65 -33.59 8.49 -318.13 -2.70 -36.29 16 16 C 0.30 15.47 6.18 42.30 0.26 15.73 16 17 C -0.32 -13.99 9.40 23.66 0.22 -13.77 16 18 C 0.14 5.37 11.15 83.10 0.93 6.30 16 19 N -0.60 -26.61 4.88 -188.18 -0.92 -27.53 16 20 H 0.42 17.31 6.40 -92.71 -0.59 16.72 16 21 C 0.32 16.71 6.35 38.88 0.25 16.96 16 22 C -0.50 -24.90 9.03 23.26 0.21 -24.69 16 23 H 0.09 4.64 7.91 -2.91 -0.02 4.62 16 24 C 0.05 2.20 5.17 85.39 0.44 2.64 16 25 N -0.82 -35.86 11.16 21.89 0.24 -35.62 16 26 Si 0.99 33.46 29.59 68.60 2.03 35.49 16 27 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 28 H -0.25 -7.75 7.11 99.48 0.71 -7.04 16 29 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 30 C -0.39 -21.94 9.83 23.41 0.23 -21.71 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 35 H 0.06 1.71 8.13 -2.38 -0.02 1.69 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.11 2.98 7.72 -2.39 -0.02 2.97 16 38 H 0.16 2.76 7.95 -2.91 -0.02 2.73 16 39 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.13 5.00 5.87 -2.91 -0.02 4.98 16 43 H 0.18 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.31 11.64 8.29 -92.71 -0.77 10.87 16 45 H 0.08 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -74.40 384.73 3.80 -70.60 By element: Atomic # 1 Polarization: 49.90 SS G_CDS: 0.43 Total: 50.33 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.41 Total: 3.33 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -4.90 Total: -120.11 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.16 Total: -39.64 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Total: -74.40 3.80 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170837704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.449 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds