Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.46993 * 2 1 4 4 C 1.34238 * 116.99612 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99943 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99488 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47146 * 60.00508 * 6 4 3 8 8 C 1.52998 * 109.47581 * 300.00149 * 6 4 3 9 9 C 1.50700 * 109.47575 * 175.00225 * 8 6 4 10 10 C 1.38226 * 119.61993 * 124.99836 * 9 8 6 11 11 C 1.38626 * 119.16325 * 179.97438 * 10 9 8 12 12 C 1.38673 * 118.41599 * 359.97438 * 11 10 9 13 13 C 1.38175 * 119.16735 * 0.27730 * 12 11 10 14 14 N 1.31849 * 119.61546 * 304.98244 * 9 8 6 15 15 N 1.46499 * 109.46765 * 180.02562 * 6 4 3 16 16 C 1.39721 * 120.00135 * 275.00076 * 15 6 4 17 17 C 1.39339 * 120.36358 * 0.02562 * 16 15 6 18 18 N 1.31977 * 121.20782 * 180.02562 * 17 16 15 19 19 C 1.31492 * 122.06261 * 359.97438 * 18 17 16 20 20 C 1.40765 * 120.56236 * 359.97438 * 19 18 17 21 21 C 1.41422 * 120.62144 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00190 * 330.40118 * 21 20 19 23 23 C 1.39941 * 120.00211 * 150.40644 * 21 20 19 24 24 N 1.30829 * 119.99994 * 161.69229 * 23 21 20 25 25 Si 1.86797 * 119.99679 * 341.69109 * 23 21 20 26 26 H 1.48502 * 109.47122 * 95.41776 * 25 23 21 27 27 H 1.48497 * 109.47190 * 215.41377 * 25 23 21 28 28 H 1.48495 * 109.47437 * 335.41984 * 25 23 21 29 29 C 1.38660 * 120.36701 * 179.72563 * 16 15 6 30 30 H 1.09000 * 109.47781 * 59.99903 * 1 2 3 31 31 H 1.09007 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47133 * 299.99425 * 1 2 3 33 33 H 1.09009 * 109.46538 * 240.00151 * 2 1 3 34 34 H 1.09000 * 109.47264 * 120.00663 * 2 1 3 35 35 H 1.09003 * 109.47060 * 55.00019 * 8 6 4 36 36 H 1.09003 * 109.47113 * 295.00553 * 8 6 4 37 37 H 1.08001 * 120.41895 * 359.96002 * 10 9 8 38 38 H 1.07991 * 120.79255 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.41865 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.62137 * 179.69974 * 13 12 11 41 41 H 0.97001 * 120.00070 * 95.00687 * 15 6 4 42 42 H 1.08007 * 119.39329 * 359.97438 * 17 16 15 43 43 H 1.08000 * 119.72222 * 180.02562 * 19 18 17 44 44 H 0.96992 * 119.99498 * 180.02562 * 24 23 21 45 45 H 1.08005 * 120.92425 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0806 0.5866 -0.0015 6 6 3.9206 2.9373 0.0000 7 1 3.5852 3.4689 0.8905 8 6 3.4485 3.6851 -1.2485 9 6 3.9226 5.1143 -1.1875 10 6 4.6639 5.6333 -2.2324 11 6 5.0948 6.9493 -2.1667 12 6 4.7619 7.6975 -1.0477 13 6 4.0221 7.1092 -0.0398 14 7 3.6253 5.8552 -0.1383 15 7 5.3836 2.8607 -0.0014 16 6 6.0769 2.7178 1.2033 17 6 5.3843 2.6470 2.4103 18 7 6.0222 2.5126 3.5579 19 6 7.3334 2.4386 3.6231 20 6 8.1129 2.5005 2.4526 21 6 9.5232 2.4204 2.5213 22 1 10.0426 2.7805 3.3970 23 6 10.2459 1.8747 1.4544 24 7 11.5271 2.1142 1.3416 25 14 9.3810 0.8042 0.1912 26 1 8.9873 1.6348 -0.9751 27 1 10.2994 -0.2736 -0.2562 28 1 8.1689 0.2005 0.8007 29 6 7.4612 2.6388 1.2103 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.3596 3.6652 -1.2939 36 1 3.8580 3.2040 -2.1367 37 1 4.9046 5.0212 -3.0891 38 1 5.6751 7.3817 -2.9683 39 1 5.0804 8.7261 -0.9630 40 1 3.7629 7.6837 0.8372 41 1 5.8711 2.9091 -0.8386 42 1 4.3058 2.7040 2.4068 43 1 7.8165 2.3284 4.5828 44 1 12.0278 1.7362 0.6019 45 1 8.0245 2.6855 0.2900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170840183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = -21.167599 kcal Electronic energy + Delta-G solvation = -29544.071855 eV Core-core repulsion = 25526.241614 eV Total energy + Delta-G solvation = -4017.830240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70332 -40.08279 -38.66553 -36.82147 -35.74344 -33.88130 -33.10736 -32.41077 -31.82113 -31.12513 -30.04983 -27.47246 -25.88085 -25.19108 -23.64972 -23.12185 -22.44512 -21.78662 -21.10552 -20.16609 -17.72315 -17.49241 -17.18647 -16.61137 -16.36852 -16.27435 -16.23098 -15.71027 -15.45107 -15.04027 -14.71755 -14.15017 -14.05334 -13.92045 -13.62982 -13.36432 -13.01401 -12.97019 -12.89231 -12.63276 -12.39806 -12.19680 -11.99246 -11.88470 -11.82419 -11.64878 -11.44282 -11.17827 -10.81124 -10.59539 -10.52495 -10.33322 -9.99779 -9.93202 -9.72040 -9.49336 -9.40759 -9.06233 -8.10277 -7.99904 -7.01053 -6.76131 -4.56258 0.99813 1.19976 2.35469 2.47605 2.67326 2.88629 3.09204 3.22079 3.36653 3.67552 3.79850 3.97863 4.14640 4.40506 4.58368 4.73125 4.76587 4.81425 4.83889 4.94310 4.96699 5.02778 5.10062 5.16682 5.37706 5.49996 5.52868 5.57327 5.63515 5.65700 5.67317 5.80976 5.96472 6.02410 6.07081 6.21184 6.35648 6.48065 6.50813 6.59456 6.81775 6.94912 7.25325 7.55514 7.69680 7.89405 7.91653 8.03183 8.09434 8.31149 8.57885 8.72519 9.56032 10.00369 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007791 B = 0.004658 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.857193 B = 6009.258969 C = 8002.882867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.435 3.565 5 O -0.484 6.484 6 C 0.181 3.819 7 H 0.130 0.870 8 C -0.071 4.071 9 C 0.139 3.861 10 C -0.169 4.169 11 C -0.072 4.072 12 C -0.178 4.178 13 C 0.108 3.892 14 N -0.473 5.473 15 N -0.725 5.725 16 C 0.205 3.795 17 C -0.093 4.093 18 N -0.434 5.434 19 C -0.030 4.030 20 C 0.079 3.921 21 C -0.435 4.435 22 H 0.096 0.904 23 C 0.087 3.913 24 N -0.803 5.803 25 Si 0.913 3.087 26 H -0.274 1.274 27 H -0.291 1.291 28 H -0.242 1.242 29 C -0.273 4.273 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.156 0.844 41 H 0.395 0.605 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.286 0.714 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 5.337 -10.872 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.279 6.279 4 C 0.274 3.726 5 O -0.369 6.369 6 C 0.071 3.929 7 H 0.147 0.853 8 C -0.109 4.109 9 C 0.001 3.999 10 C -0.188 4.188 11 C -0.098 4.098 12 C -0.197 4.197 13 C -0.049 4.049 14 N -0.182 5.182 15 N -0.358 5.358 16 C 0.104 3.896 17 C -0.251 4.251 18 N -0.141 5.141 19 C -0.197 4.197 20 C 0.074 3.926 21 C -0.464 4.464 22 H 0.114 0.886 23 C -0.133 4.133 24 N -0.426 5.426 25 Si 0.740 3.260 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.165 1.165 29 C -0.303 4.303 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.230 0.770 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.096 0.904 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.025 4.593 -9.466 20.872 hybrid contribution 1.225 -0.248 -2.513 2.806 sum -16.801 4.346 -11.979 21.087 Atomic orbital electron populations 1.21790 0.92786 1.02744 1.03437 1.22975 0.95153 0.80808 1.02525 1.86520 1.24955 1.31977 1.84406 1.25045 0.80445 0.94078 0.73037 1.90701 1.60271 1.42635 1.43278 1.20237 0.82921 0.88079 1.01662 0.85304 1.20745 1.03100 0.89849 0.97237 1.20841 0.94010 0.95163 0.89868 1.21932 1.00035 0.96581 1.00298 1.21549 0.96656 0.93836 0.97740 1.22137 1.00637 1.01564 0.95398 1.22735 0.93514 0.90783 0.97843 1.67395 1.20827 1.06355 1.23664 1.44147 1.01965 1.82704 1.07007 1.18441 0.91599 0.93738 0.85825 1.21163 0.97359 1.19716 0.86852 1.66860 1.11485 1.07708 1.28066 1.22408 0.88306 1.11417 0.97541 1.18381 0.94321 0.88603 0.91340 1.19453 0.89630 1.34110 1.03209 0.88620 1.26160 0.94735 0.95047 0.97355 1.69699 1.08891 1.34834 1.29197 0.86278 0.80307 0.79510 0.79953 1.20017 1.21853 1.16544 1.20738 0.91380 1.19845 0.98300 0.91628 0.90495 0.91387 0.91565 0.91270 0.87287 0.89425 0.84951 0.84931 0.84884 0.82672 0.76996 0.86791 0.85058 0.90365 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.15 0.38 -0.81 16 2 C 0.06 0.68 6.18 37.15 0.23 0.91 16 3 O -0.36 -4.88 10.03 -39.28 -0.39 -5.27 16 4 C 0.44 7.00 7.19 36.01 0.26 7.26 16 5 O -0.48 -9.65 16.11 -18.74 -0.30 -9.95 16 6 C 0.18 2.72 2.11 -69.08 -0.15 2.57 16 7 H 0.13 2.06 6.16 -51.93 -0.32 1.74 16 8 C -0.07 -0.79 5.12 -27.88 -0.14 -0.93 16 9 C 0.14 1.69 5.91 -82.59 -0.49 1.20 16 10 C -0.17 -1.78 9.71 -39.44 -0.38 -2.16 16 11 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 12 C -0.18 -1.76 10.11 -39.44 -0.40 -2.16 16 13 C 0.11 1.25 11.18 -17.55 -0.20 1.05 16 14 N -0.47 -6.36 9.79 -9.47 -0.09 -6.45 16 15 N -0.73 -13.15 4.48 -53.23 -0.24 -13.39 16 16 C 0.20 4.64 6.56 -83.70 -0.55 4.09 16 17 C -0.09 -2.19 10.34 -17.08 -0.18 -2.36 16 18 N -0.43 -10.86 10.33 -12.37 -0.13 -10.99 16 19 C -0.03 -0.77 10.97 -16.74 -0.18 -0.96 16 20 C 0.08 2.08 5.12 -106.70 -0.55 1.53 16 21 C -0.43 -11.83 9.60 -37.73 -0.36 -12.20 16 22 H 0.10 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.09 2.30 5.42 -17.34 -0.09 2.20 16 24 N -0.80 -21.32 13.93 55.55 0.77 -20.54 16 25 Si 0.91 21.62 24.53 -169.99 -4.17 17.45 16 26 H -0.27 -6.20 6.70 56.52 0.38 -5.82 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.24 -6.19 6.85 56.52 0.39 -5.80 16 29 C -0.27 -6.80 7.16 -38.39 -0.27 -7.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.73 8.13 -51.92 -0.42 0.31 16 34 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.11 1.05 8.00 -51.93 -0.42 0.63 16 36 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.13 1.10 7.95 -52.49 -0.42 0.68 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.40 6.66 8.62 -40.82 -0.35 6.31 16 42 H 0.11 2.45 6.19 -52.48 -0.32 2.12 16 43 H 0.13 3.10 8.06 -52.49 -0.42 2.68 16 44 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 45 H 0.11 2.60 4.77 -52.48 -0.25 2.35 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -33.25 381.82 -8.15 -41.40 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.89 Total: 10.94 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.47 Total: -8.94 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.31 Total: -51.37 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.70 Total: -15.23 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.17 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.25 -8.15 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170840183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.236 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds