Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.46993 * 2 1 4 4 C 1.34238 * 116.99612 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99943 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99488 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.47146 * 60.00508 * 6 4 3 8 8 C 1.52998 * 109.47581 * 300.00149 * 6 4 3 9 9 C 1.50700 * 109.47575 * 175.00225 * 8 6 4 10 10 C 1.38226 * 119.61993 * 124.99836 * 9 8 6 11 11 C 1.38626 * 119.16325 * 179.97438 * 10 9 8 12 12 C 1.38673 * 118.41599 * 359.97438 * 11 10 9 13 13 C 1.38175 * 119.16735 * 0.27730 * 12 11 10 14 14 N 1.31849 * 119.61546 * 304.98244 * 9 8 6 15 15 N 1.46499 * 109.46765 * 180.02562 * 6 4 3 16 16 C 1.39721 * 120.00135 * 275.00076 * 15 6 4 17 17 C 1.39339 * 120.36358 * 0.02562 * 16 15 6 18 18 N 1.31977 * 121.20782 * 180.02562 * 17 16 15 19 19 C 1.31492 * 122.06261 * 359.97438 * 18 17 16 20 20 C 1.40765 * 120.56236 * 359.97438 * 19 18 17 21 21 C 1.41422 * 120.62144 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00190 * 330.40118 * 21 20 19 23 23 C 1.39941 * 120.00211 * 150.40644 * 21 20 19 24 24 N 1.30829 * 119.99994 * 161.69229 * 23 21 20 25 25 Si 1.86797 * 119.99679 * 341.69109 * 23 21 20 26 26 H 1.48502 * 109.47122 * 95.41776 * 25 23 21 27 27 H 1.48497 * 109.47190 * 215.41377 * 25 23 21 28 28 H 1.48495 * 109.47437 * 335.41984 * 25 23 21 29 29 C 1.38660 * 120.36701 * 179.72563 * 16 15 6 30 30 H 1.09000 * 109.47781 * 59.99903 * 1 2 3 31 31 H 1.09007 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47133 * 299.99425 * 1 2 3 33 33 H 1.09009 * 109.46538 * 240.00151 * 2 1 3 34 34 H 1.09000 * 109.47264 * 120.00663 * 2 1 3 35 35 H 1.09003 * 109.47060 * 55.00019 * 8 6 4 36 36 H 1.09003 * 109.47113 * 295.00553 * 8 6 4 37 37 H 1.08001 * 120.41895 * 359.96002 * 10 9 8 38 38 H 1.07991 * 120.79255 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.41865 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.62137 * 179.69974 * 13 12 11 41 41 H 0.97001 * 120.00070 * 95.00687 * 15 6 4 42 42 H 1.08007 * 119.39329 * 359.97438 * 17 16 15 43 43 H 1.08000 * 119.72222 * 180.02562 * 19 18 17 44 44 H 0.96992 * 119.99498 * 180.02562 * 24 23 21 45 45 H 1.08005 * 120.92425 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0806 0.5866 -0.0015 6 6 3.9206 2.9373 0.0000 7 1 3.5852 3.4689 0.8905 8 6 3.4485 3.6851 -1.2485 9 6 3.9226 5.1143 -1.1875 10 6 4.6639 5.6333 -2.2324 11 6 5.0948 6.9493 -2.1667 12 6 4.7619 7.6975 -1.0477 13 6 4.0221 7.1092 -0.0398 14 7 3.6253 5.8552 -0.1383 15 7 5.3836 2.8607 -0.0014 16 6 6.0769 2.7178 1.2033 17 6 5.3843 2.6470 2.4103 18 7 6.0222 2.5126 3.5579 19 6 7.3334 2.4386 3.6231 20 6 8.1129 2.5005 2.4526 21 6 9.5232 2.4204 2.5213 22 1 10.0426 2.7805 3.3970 23 6 10.2459 1.8747 1.4544 24 7 11.5271 2.1142 1.3416 25 14 9.3810 0.8042 0.1912 26 1 8.9873 1.6348 -0.9751 27 1 10.2994 -0.2736 -0.2562 28 1 8.1689 0.2005 0.8007 29 6 7.4612 2.6388 1.2103 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.3596 3.6652 -1.2939 36 1 3.8580 3.2040 -2.1367 37 1 4.9046 5.0212 -3.0891 38 1 5.6751 7.3817 -2.9683 39 1 5.0804 8.7261 -0.9630 40 1 3.7629 7.6837 0.8372 41 1 5.8711 2.9091 -0.8386 42 1 4.3058 2.7040 2.4068 43 1 7.8165 2.3284 4.5828 44 1 12.0278 1.7362 0.6019 45 1 8.0245 2.6855 0.2900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170840183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -42.150507 kcal Electronic energy + Delta-G solvation = -29544.981742 eV Core-core repulsion = 25526.241614 eV Total energy + Delta-G solvation = -4018.740128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89233 -40.99302 -40.47092 -38.11216 -37.09726 -35.85160 -34.34805 -33.24165 -33.04767 -32.64524 -31.28478 -28.97861 -27.58620 -26.50705 -24.47679 -24.30046 -23.99347 -22.77302 -22.67942 -21.61519 -19.40348 -18.95101 -18.39841 -17.99178 -17.61575 -17.48613 -17.38929 -17.12965 -16.66643 -16.40362 -16.23430 -15.60532 -15.22557 -14.98220 -14.88270 -14.71435 -14.46697 -14.14337 -13.97113 -13.83976 -13.75550 -13.61093 -13.37924 -13.26607 -12.92237 -12.73949 -12.62156 -12.58348 -12.49491 -12.27054 -12.05180 -11.87993 -11.53603 -11.40208 -11.24263 -10.74121 -10.32813 -10.06485 -9.98140 -9.86963 -9.00657 -8.49021 -6.62661 0.19775 0.42284 0.64614 0.83625 1.09293 1.18262 1.31224 1.43694 1.56209 2.06260 2.36938 2.59306 2.87521 3.28787 3.47391 3.53392 3.82039 3.83008 3.98778 4.00393 4.08598 4.09557 4.16354 4.27128 4.28035 4.29836 4.34107 4.50341 4.53630 4.63487 4.64438 4.80589 4.84466 4.90554 4.91602 4.93642 5.08734 5.13485 5.25733 5.32499 5.35266 5.42083 5.65478 5.74374 5.83916 6.04845 6.30713 6.43688 6.67881 6.70020 6.75064 7.09828 7.59955 8.06440 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007791 B = 0.004658 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.857193 B = 6009.258969 C = 8002.882867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.443 3.557 5 O -0.527 6.527 6 C 0.181 3.819 7 H 0.121 0.879 8 C -0.061 4.061 9 C 0.118 3.882 10 C -0.173 4.173 11 C -0.078 4.078 12 C -0.178 4.178 13 C 0.085 3.915 14 N -0.504 5.504 15 N -0.715 5.715 16 C 0.216 3.784 17 C -0.094 4.094 18 N -0.443 5.443 19 C -0.053 4.053 20 C 0.069 3.931 21 C -0.465 4.465 22 H 0.072 0.928 23 C 0.061 3.939 24 N -0.830 5.830 25 Si 0.962 3.038 26 H -0.253 1.253 27 H -0.274 1.274 28 H -0.273 1.273 29 C -0.286 4.286 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.404 0.596 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.298 0.702 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.352 5.685 -13.591 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.284 3.716 5 O -0.415 6.415 6 C 0.072 3.928 7 H 0.138 0.862 8 C -0.099 4.099 9 C -0.019 4.019 10 C -0.192 4.192 11 C -0.104 4.104 12 C -0.197 4.197 13 C -0.072 4.072 14 N -0.214 5.214 15 N -0.347 5.347 16 C 0.112 3.888 17 C -0.253 4.253 18 N -0.150 5.150 19 C -0.218 4.218 20 C 0.063 3.937 21 C -0.494 4.494 22 H 0.090 0.910 23 C -0.156 4.156 24 N -0.455 5.455 25 Si 0.786 3.214 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.197 1.197 29 C -0.316 4.316 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.184 0.816 41 H 0.240 0.760 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.109 0.891 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.071 4.967 -12.211 24.013 hybrid contribution 1.638 -0.293 -1.661 2.351 sum -18.433 4.674 -13.873 23.539 Atomic orbital electron populations 1.21809 0.89807 1.04345 1.03995 1.23290 0.97437 0.79484 1.02109 1.86518 1.23335 1.33462 1.83595 1.25072 0.81014 0.93728 0.71820 1.90696 1.61346 1.43934 1.45549 1.20408 0.80845 0.87945 1.03585 0.86150 1.20769 1.04211 0.89120 0.95794 1.21013 0.95064 0.95423 0.90424 1.22246 0.99171 0.97277 1.00525 1.21965 0.96428 0.93712 0.98322 1.22455 0.99622 1.02734 0.94900 1.23079 0.94319 0.90719 0.99046 1.67346 1.21946 1.07356 1.24751 1.44167 1.03460 1.81314 1.05774 1.18420 0.91143 0.91838 0.87374 1.21578 0.98355 1.18523 0.86848 1.66873 1.11269 1.07831 1.29003 1.22525 0.88623 1.12797 0.97869 1.18485 0.94096 0.88715 0.92364 1.19433 0.90332 1.36335 1.03323 0.91019 1.26644 0.95159 0.95433 0.98403 1.69692 1.09617 1.35823 1.30403 0.85539 0.78433 0.78670 0.78712 1.17839 1.20003 1.19749 1.20832 0.92450 1.20428 0.97884 0.90478 0.88378 0.91384 0.91193 0.92631 0.85514 0.87208 0.82658 0.82298 0.82515 0.81597 0.76001 0.84858 0.84459 0.89148 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.29 71.98 0.74 -1.14 16 2 C 0.05 1.06 6.18 71.98 0.45 1.51 16 3 O -0.35 -8.83 10.03 -51.49 -0.52 -9.35 16 4 C 0.44 13.52 7.19 71.24 0.51 14.04 16 5 O -0.53 -20.49 16.11 21.98 0.35 -20.13 16 6 C 0.18 5.10 2.11 44.24 0.09 5.19 16 7 H 0.12 3.67 6.16 -2.39 -0.01 3.66 16 8 C -0.06 -1.19 5.12 29.85 0.15 -1.04 16 9 C 0.12 2.60 5.91 42.55 0.25 2.86 16 10 C -0.17 -3.13 9.71 22.36 0.22 -2.91 16 11 C -0.08 -1.31 10.18 22.47 0.23 -1.08 16 12 C -0.18 -3.13 10.11 22.36 0.23 -2.91 16 13 C 0.09 1.86 11.18 84.67 0.95 2.80 16 14 N -0.50 -12.85 9.79 -183.89 -1.80 -14.65 16 15 N -0.72 -24.72 4.48 -322.33 -1.44 -26.17 16 16 C 0.22 9.61 6.56 38.25 0.25 9.86 16 17 C -0.09 -4.35 10.34 84.94 0.88 -3.48 16 18 N -0.44 -22.28 10.33 -193.05 -1.99 -24.27 16 19 C -0.05 -2.78 10.97 85.36 0.94 -1.84 16 20 C 0.07 3.69 5.12 -21.21 -0.11 3.58 16 21 C -0.46 -26.19 9.60 23.47 0.23 -25.96 16 22 H 0.07 4.24 8.06 -2.91 -0.02 4.22 16 23 C 0.06 3.26 5.42 85.25 0.46 3.72 16 24 N -0.83 -44.50 13.93 21.83 0.30 -44.19 16 25 Si 0.96 44.30 24.53 68.60 1.68 45.98 16 26 H -0.25 -10.72 6.70 99.48 0.67 -10.05 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -13.88 6.85 99.48 0.68 -13.20 16 29 C -0.29 -14.19 7.16 23.04 0.16 -14.02 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 1.43 8.13 -2.38 -0.02 1.41 16 34 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 35 H 0.13 2.04 8.00 -2.39 -0.02 2.02 16 36 H 0.11 1.66 7.87 -2.39 -0.02 1.64 16 37 H 0.16 1.97 7.95 -2.91 -0.02 1.95 16 38 H 0.16 1.72 8.06 -2.92 -0.02 1.69 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.40 12.68 8.62 -92.71 -0.80 11.88 16 42 H 0.13 5.58 6.19 -2.91 -0.02 5.56 16 43 H 0.14 6.76 8.06 -2.91 -0.02 6.74 16 44 H 0.30 14.24 8.30 -92.71 -0.77 13.47 16 45 H 0.11 5.27 4.77 -2.91 -0.01 5.26 16 Total: -1.00 -72.99 381.82 3.38 -69.61 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.16 Total: 33.98 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 6.62 Total: -10.81 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.93 Total: -109.28 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.16 Total: -29.48 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.68 Total: 45.98 kcal Total: -72.99 3.38 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170840183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.460 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds